2015 Worm Meeting Workshop Materials

ChIP-seq: Sevinc Ercan, NYU, se71@nyu.edu

https://sites.google.com/site/ercanlab/home

mRNA-seq: Erin Osborne, UNC, erinosb@email.unc.edu

http://onish.web.unc.edu/

small RNA-seq: Weifeng Gu, UC Riverside, weifeng.gu@ucr.edu

http://cbns.ucr.edu/faculty/gu.html

presentation slides:

ChIP-seq

mRNA-seq

smallRNA-seq

protocols:

small RNA-seq

ChIP-seq

data:

UCSC genome browser session with RNA Pol II ChIP in different stages

modENCODE chromatin data sets

modENCODE transcription factor data sets

Weifeng Gu data sets in genome browser

ChIP-seq analysis tools:

Link to an Abcam ChIP-seq analysis workshop

Bowtie mapping reads

MACS peak finding

Galaxy web based analysis

UCSC genome browser

MEME ChIP motif finding

Web logo motif visualization

R bioconductor