25 January 2024 : Duhamel M, Hood ME, Rodríguez de la Vega RC, Giraud T. 2023. Dynamics of transposable element accumulation in the non-recombining regions of mating-type chromosomes in anther-smut fungi. Nat. Commun. 14:5692.
8 January 2024: Jensen A, Swift F, de Vries D, Beck RMD, Kuderna LFK, Knauf S, Chuma IS, Keyyu JD, Kitchener AC, Farh K, et al. 2023. Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation. Mol. Biol. Evol. 40:msad247.
3 December 2020: Moore L, et al. 2020. The mutational landscape of human somatic and germline cells. bioRxiv. [chosen by Alexis Simon]
19 Novembre 2020: Pimiento C, Cantalapiedra JL, Shimada K, Field DJ, Smaers JB. 2019. Evolutionary pathways toward gigantism in sharks and rays. Evolution 73: 588–599.[chosen by Nicolas Leurs]
12 Novembre 2020: Tusso S, Nieuwenhuis BPS, Weissensteiner B, Immler S, Wolf JBW. 2020. Experimental evolution of adaptive divergence under varying degrees of gene flow. bioRxiv:2020.11.02.364695.[chosen by Nicolas Bierne]
5 Novembre 2020: McGee MD, Borstein SR, Meier JI, Marques DA, Mwaiko S, Taabu A, Kishe MA, O’Meara B, Bruggmann R, Excoffier L. 2020. The ecological and genomic basis of explosive adaptive radiation. Nature 586:75–79. [Chosen by Benoit Nabholz]
6 February 2020: Xia, B., Y. Yan, M. Baron, F. Wagner, D. Barkley, M. Chiodin, S. Y. Kim, D. L. Keefe, J. P. Alukal, J. D. Boeke, and I. Yanai. 2020. Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates. Cell 180:248-262.e221. [chosen by Pierre Boursot]
10th January 2019: Bolívar, Paulina, Laurent Guéguen, Laurent Duret, Hans Ellegren, et Carina F. Mugal. 2019. « GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes ». Genome Biology 20 (1): 5. https://doi.org/10.1186/s13059-018-1613-z.
6th Novembre 2018: Bernard Y. Kim, Christian D. Huber, Kirk E. Lohmueller "Deleterious variation shapes the genomic landscape of introgression" https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007741 [chosen by Maud Duranton]
24th Septembre 2018: Warren BH, Hagen O, Gerber F, Thébaud C, Paradis E, Conti E. 2018. Evaluating alternative explanations for an association of extinction risk and evolutionary uniqueness in multiple insular lineages. Evolution. [chosen by Benoit Nabholz]
10th April 2018: Skov L, Hui R, Hobolth A, Scally A, Schierup MH, Durbin R. 2018. Detecting archaic introgression without archaic reference genomes. bioRxiv:283606. [chosen by Maud Duranton]
Belfield, E. J., Z. J. Ding, F. J. C. Jamieson, A. M. Visscher, S. J. Zheng, A. Mithani, and N. P. Harberd. 2017. DNA mismatch repair preferentially protects genes from mutation. Genome Research 28:66-74
Frigola, J., R. Sabarinathan, L. Mularoni, F. Muinos, A. Gonzalez-Perez, and N. Lopez-Bigas. 2017. Reduced mutation rate in exons due to differential mismatch repair. Nat Genet 49:1684-1692. [chosen by Pierre Boursot]
23th January 2018: Kardos M, Akesson M, Fountain T, Flagstad Ø, Liberg O, Olason P, Sand H akan, Wabakken P, Wikenros C, Ellegren H. 2018. Genomic consequences of intensive inbreeding in an isolated wolf population. Nat. Ecol. Evol. 2:124.[chosen by Maud Duranton]
16th January 2018: Simonin KA, Roddy AB. 2018. Genome downsizing, physiological novelty, and the global dominance of flowering plants. PLOS Biol. 16:e2003706.[chosen by Benoit Nabholz]
19th December 2017: K Karsten Ullrich, M Linnenbrink, D Tautz. Introgression patterns between house mouse subspecies and species reveal genomic windows of frequent exchange https://www.biorxiv.org/content/early/2017/07/25/168328 [chosen by Pierre Boursot]
12th December 2017: The Anopheles gambiae 1000 Genomes Consortium. 2017. Genetic diversity of the African malaria vector Anopheles gambiae. Nature 552, 96–100 [chosen by Pierre-Alexandre Gagnaire]
21th November 2017: Wu J, Yonezawa T, Kishino H. 2017. Rates of Molecular Evolution Suggest Natural History of Life History Traits and a Post-K-Pg Nocturnal Bottleneck of Placentals. Curr. Biol. 27:3025–3033.e5 [chosen by Nicolas Galtier]
14th November 2017: Bay RA, Arnegard ME, Conte GL, Best J, Bedford NL, McCann SR, Dubin ME, Chan YF, Jones FC, Kingsley DM, et al. 2017. Genetic Coupling of Female Mate Choice with Polygenic Ecological Divergence Facilitates Stickleback Speciation. Curr. Biol. 27:3344–3349.e4. [chosen by Pierre Boursot]
6th November 2017: Bosse M, Spurgin LG, Laine VN, Cole EF, Firth JA, Gienapp P, Gosler AG, McMahon K, Poissant J, Verhagen I. 2017. Recent natural selection causes adaptive evolution of an avian polygenic trait. Science 358:365–368. [chosen by Nicolas Bierne]
17th October 2017: Kawakami T, Mugal CF, Suh A, Nater A, Burri R, Smeds L, Ellegren H. 2017. Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds. Mol. Ecol.26:4158–4172. [chosen by Marjolaine Rousselle]
10th October 2017: Marcovitz A, Turakhia Y, Gloudemans M, Braun BA, Chen HI, Bejerano G. 2017. A novel unbiased test for molecular convergent evolution and discoveries in echolocating, aquatic and high-altitude mammals. bioRxiv:170985. [chosen by Benoit Nabholz]
3rd October 2017 Runemark A, Cassandra N Trier, Fabrice Eroukhmanoff, Jo S Hermansen, Michael Matschiner, Mark Ravinet, Tore O Elgvin, Glenn-Peter Saetre . 2017. Variation and constraints in hybrid genome formation. bioRxiv
25th September 2017 :Guerrero RF, Hahn MW. Speciation as a sieve for ancestral polymorphism. Mol. Ecol.: in press
23th January 2017: Morales HE, Pavlova A, Amos N, Major R, Bragg J, Kilian A, Greening C, Sunnucks P. 2016. Mitochondrial-nuclear interactions maintain a deep mitochondrial split in the face of nuclear gene flow. bioRxiv:095596
5th December 2016: Field Y, Boyle EA, Telis N, Gao Z, Gaulton KJ, Golan D, Yengo L, Rocheleau G, Froguel P, McCarthy MI, et al. 2016. Detection of human adaptation during the past 2000 years. Science 354:760–764.
28th Novembre 2016: Martin CH. 2016. The cryptic origins of evolutionary novelty: 1000-fold faster trophic diversification rates without increased ecological opportunity or hybrid swarm. Evolution 70:2504–2519.
21th Novembre 2016: Vijay N, Bossu CM, Poelstra JW, Weissensteiner MH, Suh A, Kryukov AP, Wolf JB. 2016. Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex. Nat. Commun.
14th Novembre 2016: Mendes FK, Hahn MW. 2016. Gene Tree Discordance Causes Apparent Substitution Rate Variation. Syst. Biol. 65:711–721.
20th June 2016: Tan G, Muffato M, Ledergerber C et al. (2015) Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference. Systematic Biology, 64, 778–791.
2nd Mai 2016: Nadachowska-Brzyska K, Burri R, Smeds L, Ellegren H (2016) PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers. Molecular Ecology, 25, 1058–1072.
11th April 2016: Martin CH, Crawford JE, Turner BJ, Simons LH (2016) Diabolical survival in Death Valley: recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth. Proc. R. Soc. B, 283, 20152334.
21th March 2016 : Sam Yeaman. Local Adaptation by Alleles of Small Effect. 2015. The American Naturalist Vol. 186, No. S1: S74-S89
7th March 2016: Davies B, Hatton E, Altemose N, Hussin JG, Pratto F, Zhang G, Hinch AG, Moralli D, Biggs D, Diaz R, et al. 2016. Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice. Nature 530:171–176.
15th February 2016: James JE, Piganeau G, Eyre-Walker A. 2016. The rate of adaptive evolution in animal mitochondria. Mol. Ecol. 25:67–78
8th February 2016 (Three articles!) :
Tuttle, Elaina M., et al. 2016. Divergence and Functional Degradation of a Sex Chromosome-like Supergene. Current Biology.
Lamichhaney, S.,et al. 2016. Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax). Nat Genet 48:84-88.
Kupper, C., et al. . 2016. A supergene determines highly divergent male reproductive morphs in the ruff. Nat Genet 48:79-83.
1st February 2016 : Gang Li et al. Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae). Genome Research