Software
Automated Invasive Radii Estimation: Tool for estimating the invasive radii of tumor spheroids grown in vitro.
FIbeR Extraction: tool for extracting network architecture from 3d, confocal images of biopolymer networks.
Beam Energy And Minimization Simulation: code for simulating 3d beam network deformation.
Stein AM et al. Estimating the cell density and invasive radius of 3d glioblastoma tumor spheroids grown in vitro. Applied Optics, 46(22):5110–5118, 2007.
Stein AM et al. An algorithm for extracting the network geometry of three-dimensional collagen gels. J. Microscopy, 232 (3) 463-475, 2008.
