Recent Publications
Recent Publications
Original Research Articles (2022~)
2025
Tomoki Kita, Ryota Sugie, Yuki Suzuki*, Shinsuke Niwa*
“Protocol for Assembling Photostable Fluorescence-labeled Tiny DNA Origami Blocks to Observe Kinesin Cooperation”
STAR Protocols 2025, 6(3), 103966.
Yuri Kobayashi, Reo Toho, Yuki Suzuki*
“DNA Origami-Based Lattice Actuator for Constructing Multi-Responsive, Multi-Reconfigurable Artificial Nanostructures”
ACS Applied Nano Materials 2025, 8(16), 8106–8112.
Deepak Karna, Shin Watanabe, Grinsun Sharma, Arpit Sharma, Yao-Rong Zheng, Ibuki Kawamata, Yuki Suzuki*, Hanbin Mao*
“Logic-gated modulation of cell migrations via mesoscale mechanical uncaging effects”
ACS Nano 2025, 19(8), 8058–8069.
Tomoki Kita, Ryota Sugie, Yuki Suzuki*, Shinsuke Niwa*
“Modular photostable fluorescent DNA blocks dissect the effects of pathogenic mutant kinesin on collective transport”
Cell Reports Physical Science 2025, 6(2), 102440.
Hiroki Oda, Shigetaka Nishiguchi, Kazuyoshi Murata, Takayuki Uchihashi, Yuki Suzuki
“Nanoscale visualization of Drosophila E-cadherin ectodomain fragments and their interactions using DNA origami nanoblocks”
Journal of Molecular Biology 2025, 437(2), 168875.
2024
Shinsuke Niwa, Natsuki Furusaki, Tomoki Kita, Yuki Suzuki and Kyoko Chiba
“The chromokinesin Kid (KIF22) forms a homodimer, moves processively along microtubules and transports double-strand DNA”
eLife 2024, Reviewed Preprint. https://doi.org/10.7554/eLife.102828.1
Nagi Yamashita, Yusuke Sato, Yuki Suzuki, Daisuke Ishikawa, Masahiro Takinoue
“DNA-origami-armored DNA condensates”
ChemBioChem 2024, 25(20), e202400468.
Yuri Numaguchi†, Kaori Tsukakoshi†, Nanami Takeuchi, Yuki Suzuki, Kazunori Ikebukuro, Ryuji Kawano
“Real-time monitoring of the amyloid β1–42 monomer-to-oligomer channel transition using a lipid bilayer system”
PNAS Nexus 2024, 3, 1–11.
2023
Deepak Karna, Eriko Mano, Jiahao Ji, Ibuki Kawamata*, Yuki Suzuki*, Hanbin Mao*
“Chemo-mechanical forces modulate the topology dynamics of mesoscale DNA assemblies”
Nature Communications 2023, 14(1), 6459.
Kotaro Watanabe, Ibuki Kawamata, Satoshi Murata, Yuki Suzuki*
“Multi-Reconfigurable DNA Origami Nanolattice Driven by the Combination of Orthogonal Signals”
JACS Au 2023, 3(5), 1435–1442. (Selected as Supplementary Cover)
2022
Antti Elonen, Ashwin Karthick Natarajan, Ibuki Kawamata, Lukas Oesinghaus, Abdulmelik Mohammed, Jani Seitsonen, Yuki Suzuki, Fredrich C. Simmel, Anton Kuzyk, Pekka Orponen
“Algorithmic design of 3D wireframe RNA polyhedra”
ACS Nano 2022, 16(10), 16608–16616.
Md. Dobirul Islam, Kumi Hidaka, Yuki Suzuki, Hiroshi Sugiyama, Masayuki Endo, Shigeyoshi Matsumura, Yoshiya Ikawa.
“A box-shaped ribozyme octamer formed by face-to-face dimerization of a pair of square-shaped ribozyme tetramers”
Journal of Bioscience and Bioengineering 2022, 134(3), 195–202.
Yuki Suzuki*, Ibuki Kawamata, Kotaro Watanabe, Eriko Mano
“Lipid bilayer-assisted dynamic self-assembly of hexagonal DNA origami blocks into monolayer crystalline structures with designed geometries”
iScience 2022, 25(5), 104292.
Kazuki Fukushima, Kodai Matsuzaki, Masashi Oji, Yuji Higuchi, Go Watanabe, Yuki Suzuki, Moriya Kikuchi, Nozomi Fujmura, Naofumi Shimokawa, Hiroaki Ito, Takashi Kato, Seigou Kawaguchi, and Masaru Tanaka
“Anisotropic, Degradable Polymer Assemblies Driven by a Rigid Hydrogen-Bonding Motif That Induce Shape-Specific Cell Responses”
Macromolecules 2022, 55, 15–25.