mask creation

Mask Creation

The mask creation module is uses a label map (segmentation) image to create a gray-scale image which has just part of interest.

Interface Description:

Input Volume: The gray-scale to be modified.

Mask Volume: The label map segmentation of the region of interest.

Masked Volume: The output gray-scale volume.

Label Value: The value of the label used as mask of the 'Mask Volume'. The number can be found by passing the mouse cursor over the label at the Slicer's view and the label number will be shown on the bottom left corner of the interface description (red circle at the screenshot).

This is an example of the module application.\

Input Volume Mask Volume Masked Volume

Observation: Slicer do not save files automatically. To have the files saved on the computer click in 'File' on the upper left corner and then in 'Save'. A new window will appear allowing the user to modify the file name, format and directory.

For more information about ITK-snap.

For more information about 3D Slicer

For more information about the CMFreg documentation.

For access the CMFreg source code.