Quick Start
Stranded, paired-end, insert size = 200 bp:
$ rnnotator.pl -strP 200 sampleA.fq sampleB.fq
Non-stranded, paired-end, insert size = 200 bp:
$ rnnotator.pl -nonP 200 sampleA.fq sampleB.fq
Mixed library types:
$ rnnotator.pl –nonS sampleA.fq sampleB.fq –strP 150 sampleC.fq