Library系インストール

$ tar -zxvf mpich2-1.4.1p1.tar.gz

$ cd mpich2-1.4.1p1

$ export CC=icc

$ export CXX=icpcexport

$ export CPP='icc -E'

$ export CXXCPP='icc -E'

$ export FC=ifort

$ export F77=ifort

$ ./configure --prefix=/home/yoshioka/local/mpitch2-1.4.1p1 --enable-debuginfo --enable-fast=O3 --with-device=ch3:sock --with-pm=mpd

$ make &> make.log

$ make install

# mpich2-1.4

export MPICH="/home/yoshioka/local/mpich2-1.4.1p1"

export PATH="${MPICH}/bin:${PATH}"

export LD_LIBRARY_PATH="${MPICH}/lib:${LD_LIBRARY_PATH}"

export INCLUDE="${MPICH}/include:${INCLUDE}"

$ wget http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.7.tar.bz2

$ bunzip2 openmpi-1.8.7.tar.bz2

$ tar -xvf openmpi-1.8.7.tar

$ cd openmpi-1.8.7

$ ./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/home/yoshioka/local/openmpi-1.8.7

$ make &> make.log

$ make install

#openMPI

export MANPATH="/home/yoshioka/openmpi-1.8.7/share/man:$MANPATH"

export LD_LIBRARY_PATH="/home/yoshioka/openmpi-1.8.7/lib:$LD_LIBRARY_PATH"

export PATH="/home/yoshioka/openmpi-1.8.7/bin:$PATH"

$ unzip jasper-1.900.1.zip

$ cd jasper-1.900.1

$ ./configure --prefix=/home/yoshioka/local/jasper-1.900.1

$ make &> make.log

$ make install

#### jasper-1.900.1

export JASPERBIN="/home/yoshioka/local/jasper-1.900.1/bin"

export JASPERINC="/home/yoshioka/local/jasper-1.900.1/include"

export JASPERLIB="/home/yoshioka/local/jasper-1.900.1/lib"

$ tar -xzf jpegsrc.v9a.tar.gz

$ cd jpeg-9a

$ ./configure --prefix=/home/yoshioka/local/jpeg-9a

$ make &> make.log

$ make install

$ tar -xzf szip-2.1.tar.gz

$ cd szip-2.1

$ ./configure --prefix=/home/yoshioka/local/szip-2.1

$ make &> make.log

$ make install

$ tar -xzf zlib-1.2.8.tar.gz

$ cd zlib-1.2.8

$ export CC=icc

$ export CFLAGS="-03 -fPIC"

$ ./configure --prefix=/home/yoshioka/local/zlib-1.2.8

$ make &> make.log

$ make check $> make.check.log

$ make install

$ tar -xvf hdf5-1.8.15-patch1

$ cd hdf5-1.8.15-patch1

$ export CC=gcc

$ export F77=ifort

$ F9X=ifort ./configure --prefix=/home/yoshioka/local

$ make &> make.log

$ make check &> make.check.log

$ make install

#### jasper-1.900.1

export JASPERBIN="/home/yoshioka/local/jasper-1.900.1/bin"

export JASPERINC="/home/yoshioka/local/jasper-1.900.1/include"

export JASPERLIB="/home/yoshioka/local/jasper-1.900.1/lib"

$ tar -xzf netcdf-4.3.3.1.tar.gz

$ cd netcdf-4.3.3.1

$ export CC=icc

$ export CXX=icpc

$ export FC=ifort

$ export F77=ifort

$ export F90=ifort

$ export CFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CXXFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export FCFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F77FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F90FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CPP='icc -E -mcmodel=large'

$ export CXXCPP='icpc -E -mcmodel=large'

$ export CPPFLAGS="-DNDEBUG -DpgiFortran ${LDFLAGS}"

$ ./configure --prefix=/home/yoshioka/local/netcdf-4.3.3.1 --enable-shared --disable-netcdf-4 --disable-dap

$ make &> make.log

$ make check &> make.check.log

$ make install

$ export HDFROOT="/home/yoshioka/local/hdf5-1.8.15"

$ export LD_LIBRARY_PATH="${HDFROOT}/lib:${LD_LIBRARY_PATH}"

$ export LDFLAGS="-L${HDFROOT}/lib -I${HDFROOT}/include"

$ export CC=icc

$ export CXX=icpc

$ export FC=ifort

$ export F77=ifort

$ export F90=ifort

$ export CFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CXXFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export FCFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F77FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F90FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CPP='icc -E -mcmodel=large'

$ export CXXCPP='icpc -E -mcmodel=large'

$ export CPPFLAGS="-DNDEBUG -DpgiFortran ${LDFLAGS}"

$ ./configure --prefix=/home/yoshioka/local/netcdf-4.3.3.1 --with-hdf5=/home/yoshioka/local/hdf5-1.8.15 --with-zlib=/home/yoshioka/local/zlib-1.2.8 --with-szlib=/home/yoshioka/local/szip-2.1 --enable-shared --enable-netcdf-4 --enable-dap --disable-fortran --disable-cxx

$ make &> make-C.log

$ make check &> make.check-C.log

$ make install

#netCDF

export NETCDF="/home/yoshioka/local/netcdf-4.3.3.1"

export NCHOME="${NETCDF}"

export NETCDFHOME="${NETCDF}"

export NETCDFROOT="${NETCDF}"

export PATH="${NETCDF}/bin:${PATH}"

export LD_LIBRARY_PATH="${NETCDF}/lib:${LD_LIBRARY_PATH}"

export MANPATH="${NETCDF}/man:${MANPATH}"

$ tar -xzf netcdf-fortran-4.4.2.tar.gz

$ cd netcdf-fortran-4.4.2

$ CPPFLAGS="-I/home/yoshioka/local/netcdf-4.3.3.1/include" LDFLAGS="-L/home/yoshioka/local/netcdf-4.3.3.1/lib" ./configure --prefix=/home/yoshioka/local/netcdf-4.3.3.1/

$ make &> make.log

$ make check &> make.check.log

$ make install

$ tar -xzf netcdf-3.6.3.tar.gz

$ cd netcdf-3.6.3

$ export CC=icc

$ export CXX=icpc

$ export FC=ifort

$ export F77=ifort

$ export F90=ifort

$ export CFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CXXFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export FCFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F77FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F90FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CPP='icc -E -mcmodel=large'

$ export CXXCPP='icpc -E -mcmodel=large'

$ export CPPFLAGS="-DNDEBUG -DpgiFortran ${LDFLAGS}"

$ ./configure --prefix=/home/yoshioka/local/netcdf-4.3.3.1 --enable-shared --disable-netcdf-4 --disable-dap

$ make &> make.log

$ make check &> make.check.log

$ make install

$ export HDFROOT="/home/yoshioka/local/hdf5-1.8.15"

$ export LD_LIBRARY_PATH="${HDFROOT}/lib:${LD_LIBRARY_PATH}"

$ export LDFLAGS="-L${HDFROOT}/lib -I${HDFROOT}/include"

$ export CC=icc

$ export CXX=icpc

$ export FC=ifort

$ export F77=ifort

$ export F90=ifort

$ export CFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CXXFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export FCFLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F77FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export F90FLAGS="-O3 -xAVX -fma -mcmodel=large -fPIC"

$ export CPP='icc -E -mcmodel=large'

$ export CXXCPP='icpc -E -mcmodel=large'

$ export CPPFLAGS="-DNDEBUG -DpgiFortran ${LDFLAGS}"

$ ./configure --prefix=/home/yoshioka/local/netcdf-4.3.3.1 --with-hdf5=/home/yoshioka/local/hdf5-1.8.15 --with-zlib=/home/yoshioka/local/zlib-1.2.8 --with-szlib=/home/yoshioka/local/szip-2.1 --enable-shared --enable-netcdf-4 --enable-dap --disable-fortran --disable-cxx

$ make &> make-C.log

$ make check &> make.check-C.log

$ make install

#netCDF

export NETCDF="/home/yoshioka/local/netcdf-4.3.3.1"

export NCHOME="${NETCDF}"

export NETCDFHOME="${NETCDF}"

export NETCDFROOT="${NETCDF}"

export PATH="${NETCDF}/bin:${PATH}"

export LD_LIBRARY_PATH="${NETCDF}/lib:${LD_LIBRARY_PATH}"

export MANPATH="${NETCDF}/man:${MANPATH}"

$ tar -xzf libpng-1.5.23rc03.tar.fz

$ cd libpng-1.5.23rc03

$ ./configure --prefix=/home/yoshioka/local

$ make &> make.log

$ make install

$ sudo port install git +svn +doc +bash_completion +gitweb

$ wget -nc https://github.com/downloads/libevent/libevent/libevent-2.0.21-stable.tar.gz

$ tar -zxvf libevent-2.0.21-stable.tar.gz

$ cd libevent-2.0.21-stable

$ ./configure --prefix=/home/yoshioka/local

$ make &> make.log

$ make check &> make.check.log

$ make install

$ wget "http://sourceforge.net/projects/tmux/files/latest/download/tmux-2.0.tar.gz"

$ tar -zxvf tmux-2.0.tar.gz

$ cd tmux-2.0

$ ./configure PKG_CONFIG_PATH="/home/yoshioka/local/lib/pkgconfig" CFLAGS="-I$/home/yoshioka/local/include" LDFLAGS="-L/home/yoshioka/local/lib" --prefix=/home/yoshioka/local/tmux-2.0 --enable-static

$ make &> make.log

$ make install

alias tmux='LD_LIBRARY_PATH=/home/yoshioka/local/lib /home/yoshioka/local/tmux-2.0/bin/tmux'

$ wget -nc http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/parallel-netcdf-1.6.1.tar.gz

$ tar -xzf parallel-netcdf-1.6.1.tar.gz

$ cd parallel-netcdf-1.6.1

$ export INSTDIR=/home/yoshioka/local/parallel-netcdf-1.6.1_with_mpich2-intel

$ export MPICH2=/home/yoshioka/local/mpich2-1.4.1p1

$ export CC=icc

$ export CXX=icpc

$ export FC=mpif90

$ export F77=mpif77

$ export F90=mpif90

$ export MPICC=mpicc

$ export CPP='icc -E'

$ export CXXCPP='icpc -E'

$ export CPPFLAGS="-DNDEBUG -Df2cFortran"

$ export CFLAGS=-O

$ export FFLAGS='-O -W'

$ ./configure --prefix=${INSTDIR} --with-mpi=${MPICH2}

$ make &> make.log

$ make check &> make.check.log

$ make install

#pnetCDF

export PNETCDF=/home/yoshioka/local/parallel-netcdf-1.6.1_with_mpich2-intel

export PATH="${PNETCDF}/bin:${PATH}"

export LD_LIBRARY_PATH="${PNETCDF}/lib:${LD_LIBRARY_PATH}"

export INCLUDE="${PNETCDF}/include:${INCLUDE}"

export MANPATH="${PNETCDF}/man:${MANPATH}"

$ wget -nc http://www.netlib.org/lapack/lapack-3.5.0.tgz

$ tar -xvzf lapack-3.5.0.tgz

$ cp INSTALL/make.inc.ifort ./make.inc

書き換え前

(20行目) LOADOPTS =

書き換え後

(20行目) LOADOPTS = -L/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64/

$ make blaslib

$ make lapacklib

$ make tmglib(時間計測用なのでインストールする必要がない場合も)

$ ls *.a

liblapack.a librefblas.a libtmglib.a

$ cp *.a ../../local/lib/

$ wget -nc http://www.netlib.org/lapack/lapack-3.5.0.tgz

$ tar -xvzf lapack-3.5.0.tgz

$ cp INSTALL/make.inc.ifort ./make.inc

書き換え前

(20行目) LOADOPTS =

書き換え後

(20行目) LOADOPTS = -L/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64/

$ make blaslib

$ make lapacklib

$ make tmglib(時間計測用なのでインストールする必要がない場合も)

$ ls *.a

liblapack.a librefblas.a libtmglib.a

$ cp *.a ../../local/lib/