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Pop Lab
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Resources/Getting Started
Educational materials
Assembly Graph Tutorials
Coverage and abundance estimation
Genome assembly primer
K-mers in genome assembly
Metagenomic binning with binnacle
Scaffolding and detecting structural variants with MetaCarvel
Mihai's musings
Bioinformatics textbooks, where to?
Healthcare is a moral, not an economic issue
Machine learning is not artificial intelligence
More guns won't help
Propaganda works
Sailing and academic leadership
The case against LaTeX
The front porch
Thoughts on Open Access
Photos from the Romanian revolution
Lab Alumni
Current Lab Members
Our Research
Overview
PIRATE: Phage Identification fRom Assembly-graph varianT Elements
Outreach and Events
Lab Fun
News
(belated) April 2017: Jay Ghurye advances to candidacy
(belated) April 2018: Alexander Stoppel finishes semester long internship
(belated) April 2018: Nathan Olson successfully defends his thesis
(belated) August 2017: Brook Stacy joins the lab
(belated) August 2018: Dan Nasko and Seth Commichaux present at ISME17 in Leipzig, Germany
(belated) August 2018: Jackie Meisel attends FSCI2018
(belated) August 2018: Mihai Pop gives keynote talk on Use of Algorithms in Microbial Research
(belated) December 2018: Dan Nasko's paper is accepted in Frontiers in Microbiology
(belated) February 2017: Grad students Nidhi Shah and Jay Ghurye presented posters at the Broad Institute
(belated) February 2018: Mihai Pop is named Interim Director of UMIACS
(belated) January 2018: UMD hosts the third Mid-Atlantic Microbiome Meet-up Conference
(belated) July 2017: Jay Ghurye attends Computational Genomics workshop at UCLA
(belated) July 2018: Brian Brubach presents at the 29th Annual Symposium on Combinatorial Pattern Matching (CPM)
(belated) July 2018: Dan Nasko is promoted to Research Scientist
(belated) July 2018: Jackie Meisel presents at Beneficial Microbes in Madison, WI
(belated) July 2018: Jay Ghurye presents at ISMB in Chicago
(belated) July 2018: Mihai Pop co-directs the 2018 STAMPS course
(belated) July 2018: Todd Treangen is now an Assistant Professor!
(belated) July 2019- Dylan Taylor starts graduate school at JHU
(belated) July 2019- Mihai Pop co-directs the 2019 STAMPS course
(belated) June 2017: Dan Nasko joins the lab as a post-doc
(belated) June 2017: The Pop lab goes to the BEST summer school
(belated) June 2019- Summer interns join the Pop Lab
(belated) June 2019- The Pop Lab goes to ASM Microbe in San Francisco
(belated) Lee Mendelowitz successfully defended his PhD
(belated) March 2018: Jackie Meisel and Dan Nasko attend MPower Day in Annapolis
(belated) March 2018: Oliver Schliebs finishes semseter long internship
(belated) May 2017: UMD hosts a joint CAMI-M3 workshop on metagenomic software validation
(belated) May 2018: Marcus Fedarko graduates from UMD
(belated) November 2016: UMD hosts the first Mid-Atlantic Microbiome Meet-up (M3) Conference and Workshop
(belated) November 2017: Jay Ghurye attends Nanopore Conference meeting in New York
(belated) November 2018: Brian Brubach advances to candidacy
(belated) November 2018: Mihai Pop and Jackie Meisel attend ABRCMS in Indianapolis, IN
(belated) November 2018: Mihai Pop is named Director of UMIACS
(belated) November 2018: The Mid-Atlantic Microbiome Meet-up (M3) Meeting Report is published in Microbiome
(belated) October 2017: Congrats to grad students Nidhi Shah and Victoria Cepeda Espinoza
(belated) October 2018: Brian Brubach gives invited tutorial talk at the 2018 International Workshop on String Algorithms in Bioinformatics
(belated) October 2018: Dan Nasko and Todd Treangen's manuscript accepted at Genome Biology with co-authors Adam Phillippy and Sergey Koren
(belated) October 2018: Jay Ghurye successfully defends his thesis
(belated) September 2017: Jacquelyn Meisel joins the lab as a post-doc
(belated) September 2018: Nidhi Shah's paper is published in Bioinformatics
(belated) September 2018: Pop Lab students attend the Workshop on the Future Algorithms in Biology at CMU
(belated) September 2018: The Pop Lab welcomes new undergraduate researchers
April 2019: Dan moves to San Diego
April 2019: Nidhi and Mihai attended a workshop at the Simons Foundation
April 2019: The Pop Lab goes "Into the Micro-verse" at Maryland Day
April 2019: The Pop lab moves!
April 2021: Mihai presents at Purdue University virtual conference
April 2021: Nidhi Shah successfully defends her thesis
August 2019: MetaCarvel manuscript is published in Genome Biology
August 2019: Nidhi Shah passes her qualifying exam
August 2019: Summer interns present their progress to CBCB
August 2020: Victoria Cepeda Espinoza successfully defends her thesis
Chris Hill successfully defends his PhD
December 2019: Brook and Victoria present their work at CBCB Seminar
December 2019: Mihai was named a Fellow of the Association for Computing Machinery (ACM)
February 2019: Dan visits Hebrew University to study AMPs
February 2019: Jackie attends MPOWER day in Annapolis
February 2021: Binnacle is published
January 2019: Harihara Subrahmaniam Muralidharan joins the lab
January 2019: The Pop Lab attends the 4th M3 Meeting and hosts a Taxonomic Identification Workshop
January 2020- Mihai receives NIH grant to develop tools for metagenomic analyses
January 2020: Nidhi Shah attended SSB 2020
January 2021: Kiran Javkar passes his qualifying exam
Jeremy Selengut is a Thompson Reuters highly cited researcher!
Joe Paulson successfully defends his PhD
July 2020: Jackie promoted to Assistant Research Scientist
July 2020: Pop lab presents at ISMB 2020!
June 2020: Brian Brubach successfully defends his thesis
Lab alumn Mike Schatz now a Bloomberg Professor at JHU
Lab gets a home page
March 2019: Dan's paper is published in mBio
March 2020: Brian accepts a faculty position
March 2021: Preprint on hydrogen sulfide production in the gut microbiome is posted
May 2019: Saul gives talk at CBCB Research in Progress Seminar
May 2019: Seth Commichaux passes his qualifying exam
May 2019: The Pop Lab goes to RECOMB at GWU
May 2020: Abstracts accepted at ISMB
Mihai promoted to Professor
November 2019: Mihai and Jackie attend ABRCMS in Anaheim, CA
November 2019: Pop lab members attend the second NCBI Virus Discovery Codeathon
November 2019: Seth presents his work at CBCB Seminar
October 2019: ATLAS is published in Frontiers in Genetics
October 2019: Jackie and Nidhi present their work at CBCB Seminar
October 2019: Kiran presents his work at CBCB Seminar
October 2020: Pop Lab presents at CSHL Microbiome Meeting
Postdoctoral position available
September 2019: Jackie attends NIST Workshop on Standards for Microbiome Measurements
Successful summer school with Tuebingen colleagues
The Pop lab goes international
Software
Pop Lab
(belated) October 2018: Brian Brubach gives invited tutorial talk at the 2018 International Workshop on String Algorithms in Bioinformatics
Post date: Jan 13, 2019 1:10:19 AM
Brian’s tutorial
focused on Bloom filters and min hashing.
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