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Sequencing
Data Analysis
High-confidence Somatic SNV and INDEL v1.2
VAF of Gold Set positions in WES Data
Orthogonal Validations
VCF File Annotations
Somatic Mutation Results on Seven Bridges Genomics
Somatic Mutations Tools on CGC
SomaticSeq generated tumor-normal run scripts
Building workflow on Seven Bridges Genomics
BAM Simulation pipeline in SomaticSeq
Use SomaticSeq to run Dockerized Mutation Callers
Benchmarking Examples
Tumor-Normal Titration
WES
FFPE
Different Library Preps
Identify high-confidence Regions
Conferences and Papers
CGC Tutorial
Globus Tutorial
seqc2
WES
SomaticSeq 5-took workflow completely locally
Uploaded to CGC
here
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TNscope
Sentieon TNscope - batch WES fresh frozen
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