CGC Tutorial
Upload files to CGC
Upload files to CGC
Command to upload (an example)
Command to upload (an example)
/home/fangl10/apps/cgc-uploader/bin/cgc-uploader.sh -t xxxxxAuthenticationKeyxxxxxx --project xiaowen/fda-seqc2-wg-1 --tag bamSurgeon --manifest-file $ABSOLUTE/PATH/TO/file-manifest.tsv --manifest-metadata
Optionally create a .meta file for each file to be uploaded (an example)
Optionally create a .meta file for each file to be uploaded (an example)
{
"sample_id": "bwa.tumorDesignate_IL_N_2",
"library_id": "bwa",
"platform": "illumina HiSeq"
}
Download
Download
/home/fangl10/apps/aria2-1.33.1-linux-gnu-64bit-build1/aria2c --check-certificate=false -i download_link.txt