Hester Mallonee
Upcoming tasks:
Current word count: 7463
2/8:
- No work on manuscript, just work on intro or intro/background chapter
- Check the files where the R/Jmp didn’t line up – see if there’s anything funny in the visual imagery, check the other data resolutions/window sizes to see if the same field are causing issues in other scales of analysis
- Look at pca link Shannon sent over
- Email CB re: any old PCA slides or tools? Or who would teach that (DD or SG)?
2/1:
- Write 600 words a day; 20 min on weekend
- Do the kmeans with Jmp for the other datasets
- Figure out how it's making Pc1 and Pc2, and what is going into each
- Look at whether the clusters are intuitively good, compare to other methods to see if consistent
1/11/21:
- Write 600 words a day and edit 500 - 1000 a day
- Go back through old files and find figures with curves
- Read a refresher paper
12/28/20:
- Write 600 words a day and edit 500 - 1000 a day
12/21/20:
- Do the dendrograms and kmeans for the 50cm_7m, 50cmf, and 50cmf_7m
- Create the figures for those datasets
- Write 500 words a day and edit 500 - 1000 a day
2/28:
- Do the dendrograms and kmeans for a broader range of bins for the RMS and AR
- Chat with AS and SH re: labels for dendrograms
- Send SKN an update by 2/28
- Next: plan to do the slope
- Dates in Pocatello: 3/15 - 4/11
Finalize data processing:
- Get RMS results (11/2)
- Process all datasets at all resolutions (11/2)
- Ensure RMS code is performing appropriately (11/2)
- Correct smoothing during resample in python code (10/26)
- Get AR results (11/9)
- Process all datasets at all resolutions (11/9)
- Develop an adjustable window size for AR code (11/9)
- Look at rugosity function - check if can adjust window (11/2)
- Check with AS about the area ratio function that she's been using (11/2)
- Get slope results: (11/9)
- The slope method in Arc does not have an adjustable window size (11/9)
Finalize statistical results (11/16):
- Verify that this code is good to go (11/16)
- Add kurtosis (11/16)
Get visual results (i.e.,e a raster of the RMS height, the AR, etc): (11/16)
- Find a couple that will give clean examples for publication (11/16)
Find curve fitting equations: (11/16)
- Do this for both the 3x3 and the 7m window size (11/6)
- Do this in excel
- Individual and combined datasets (11/16)
Figure out distinguishing factors between curve equations (11/23)
Write a paper
Tasks for 2/11:
- Use python code at https://stackoverflow.com/questions/1400213/3d-least-squares-plane to make variable window slope code
(use a and b from ax+by+c=z to find overall slope using vector addition)
- Run slope analyses
- Start a google drive folder (shared with SKN) for paper draft & figures
- spreadsheet checklist with each texture, resolution, analysis
- run the Elevation Void Fill on a 50 cm dataset to see if the statistics are different from the dataset with holes
- process intermediate textures
- finalize graphs
- work on paper draft
- continue to think about: texture nomenclature, coauthors, suggested reviewers
Tasks for 12/23:
- Adjust AR to fill in holes with average of surrounding cells
- Figure out how RMS is working with holes and correct
- Make sure the 7m window is working for both
- Use python code at https://stackoverflow.com/questions/1400213/3d-least-squares-plane to make variable window slope code
(use a and b from ax+by+c=z to find overall slope using vector addition)
- Run slope analyses
- If time, do vis/stats/curve fit for RMS (note, focus on other stuff, but this is a backup)
- Don't panic
Tasks for 11/23:
debug AR
Run AR analyses
Does Slope have adjustable window?
Use python code at https://stackoverflow.com/questions/1400213/3d-least-squares-plane to make variable window slope code
(use a and b from ax+by+c=z to find overall slope using vector addition)
Run slope analyses
If time, do vis/stats/curve fit for RMS (note, focus on other stuff, but this is a backup)
Tasks for 11/16:
Update AR code using notes from meeting
Run AR analyses
Does Slope have adjustable window?
Use python code at https://stackoverflow.com/questions/1400213/3d-least-squares-plane to make variable window slope code
(use a and b from ax+by+c=z to find overall slope using vector addition)
Run slope analyses
If time, do vis/stats/curve fit for RMS (note, focus on other stuff, but this is a backup)
Tasks for 11/2:
Dig into f90 code to understand updates, add new comments
Outline: put in dummy dates for completion of tasks prior to Craters
- goal: have all figures done before leaving
Delete junk folders/files
Identify while files need re-processing (hole smoothing)
- reprocess as needed
Finish running RMS
Check with Ash about AreaRatio/Rugosity
Update AreaRatio code -OR- Start AreaRatio/Rugosity runs
Tasks for 10/26:
Dig into f90 code to find error (window size issues?)
- check to see if mini dataset is more than 7m across
In python: reverse clip order
Outline major tasks to be done and their dependencies
Go through and organize old results (images, data, graphs of values)
---Break for job----
Tasks for 4/9:
*Make the images that SKN requested
*Make the geovis DSM
*Plot curves of normalized frequency distributions for different textures (1 set of patches that represent your definition of a texture, plus other independent patches that you're comparing to the "definition")
- do separate plots for each texture, at the separate resolutions
- we're looking for number and value of modes in the normalized distributions (local peaks)
*10 cm statistics
*Look at statistics, evaluate/interpret
Mask slope function
- 10, 50, 100, 200 in slope
Comment AR code (do a simple 3x3 by hand)
Get ahead:
Fix stats code; raster -> point
Review Westby paper (sift variable)
Compare how the two programs are using sift
normality: in stats code, add kurtosis function
- read up on difference between kurtosis types
Tasks for 3/14:
Daily updates
10 cm statistics
Look at statistics, evaluate/interpret
Mask slope function
- 10, 50, 100, 200 in slope
**Comment AR code (do a simple 3x3 by hand)
Plot curves of normalized frequency distributions for different textures (1 set of patches that represent your definition of a texture, plus other independent patches that you're comparing to the "definition")
- do separate plots for each texture, at the separate resolutions
- we're looking for number and value of modes in the normalized distributions (local peaks)
Get ahead:
Fix stats code; raster -> point
Review Westby paper (sift variable)
Compare how the two programs are using sift
normality: in stats code, add kurtosis function
- read up on difference between kurtosis types
Tasks for 3/7:
Daily updates
Scan relevant content from books, and return them
upload FINESSE sample list to Drive; share
Upload Geoviz DSM stuff to Box
Make schedule
Plot curves of normalized frequency distributions for different textures (1 set of patches that represent your definition of a texture, plus other independent patches that you're comparing to the "definition")
- do separate plots for each texture, at the separate resolutions
- we're looking for number and value of modes in the normalized distributions (local peaks)
Email Donna, SKN about availability
Tasks for 2/28:
Daily updates
10 cm statistics
Look at statistics, evaluate/interpret
Mask slope function
- 10, 50, 100, 200 in slope
**Comment AR code (do a simple 3x3 by hand)
Plot curves of normalized frequency distributions for different textures (1 set of patches that represent your definition of a texture, plus other independent patches that you're comparing to the "definition")
- do separate plots for each texture, at the separate resolutions
- we're looking for number and value of modes in the normalized distributions (local peaks)
Scan relevant content from books, and return them
upload FINESSE sample list to Drive; share
Upload Geoviz DSM stuff to Box
Get ahead:
Fix stats code; raster -> point
Review Westby paper (sift variable)
Compare how the two programs are using sift
normality: in stats code, add kurtosis function
- read up on difference between kurtosis types
Tasks for 2/21:
10 cm statistics
Look at statistics, evaluate/interpret
Mask slope function
- 10, 50, 100, 200 in slope
**Comment AR code (do a simple 3x3 by hand)
Do ANOVA texture self-comparison (e.g., smooth vs smooth)
- break into separate code and run
- update code to handle difference in sample sizes caused by holes
*Find other textures for ANOVA
- clip
run Kruskal-Wallace on a dataset of your choice. (slabby?)
**Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
Fix stats code; raster -> point
Review Westby paper (sift variable)
Compare how the two programs are using sift
normality: in stats code, add kurtosis function
- read up on difference between kurtosis types
upload FINESSE sample list to Drive; share
Upload Geoviz DSM stuff to Box
Keep doing daily updates
Tasks for 2/16:
10 cm statistics
Look at statistics, evaluate/interpret
Mask slope function
- 10, 50, 100, 200 in slope
**Comment AR code (do a simple 3x3 by hand)
**Send SKN outline of what code is supposed to do (start with stats)
Do ANOVA texture self-comparison (e.g., smooth vs smooth)
- break into separate code and run
*Find other textures for ANOVA
- clip
run Kruskal-Wallace on a dataset of your choice. (slabby?)
**Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
Fix stats code; raster -> point
Finish making interpolated DSMs for MD imagery
- mask using hole-y ones
Rename files in Box
normality: in stats code, add kurtosis function
Re-start daily email check-in
Tasks for 2/7:
10 cm statistics
Look at statistics, evaluate/interpret
Mask slope function
- 10, 50, 100, 200 in slope
**Comment AR code (do a simple 3x3 by hand)
**Send SKN outline of what code is supposed to do (start with stats)
Do ANOVA texture self-comparison (e.g., smooth vs smooth)
- break into separate code and run
*Find other textures for ANOVA
- clip
run Kruskal-Wallace on a dataset of your choice. (slabby?)
**Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
Fix stats code; raster -> point
**Review reports on resolution
***Hole-y DTMs: use holey ones to mask out holes in higher-res
- run through downsampling code
***archive all imagery in Box
get gfortran on backup computer in DML (ask Diana)
- can also log in to minerve
normality: in stats code, add kurtosis function
Tasks for 1/31:
10 cm statistics
Mask slope function
- 10, 50, 100, 200 in slope
*Find bug in AR code (1/25)
Send SKN outline of what code is supposed to do (start with stats)
Look at statistics, evaluate/interpret
Do ANOVA texture self-comparison (e.g., smooth vs smooth)
- break into separate code and run
Find other textures for ANOVA
- clip
run Kruskal-Wallace on a dataset of your choice. (slabby?)
*Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon (1/25)
Fix stats code; raster -> point
*Review reports on resolution (1/26)
*Hole-y DTMs: use holey ones to mask out holes in higher-res (1/26)
*archive all imagery in Box (1/24)
get gfortran on backup computer in DML (ask Diana)
- can also log in to minerve
*normality: in stats code, add kurtosis function
Tasks for 1/17:
Find infinity error
sort 10 cm files
run 10 cm files
Run statistics for 10 and 50 cm.
Look at statistics, evaluate/interpret
Do ANOVA texture self-comparison (e.g., smooth vs smooth)
*Find other textures for ANOVA
- clip
KB: Does ejecta look like rough lava?
run Kruskal-Wallace on a dataset of your choice. (slabby?)
*Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
*Fix stats code
- remove border of 0s
Meet with DD when she gets back/Meet with AS
Mask slope function output to maintain holes
archive all imagery in Box
make smooth deveg training data and reprocess smooth datasets
Tasks for 1/10:
*Finish converting methods outline to text, looking for challenging sections
*Write 2 pages
*Debug devegetation/resampling code
*Devegetate areas, compare with ANOVA (smooth vs. smooth; rough vs. rough; smooth vs. rough)
*Find other textures for ANOVA
- clip
KB: Does ejecta look like rough lava?
Use hole code to process data
Run Kruskal-Wallace on a dataset of your choice. (slabby?)
*Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
*Fix stats code
*Touch base with DD about DTMs for resolution issue
Mask slope function output to maintain holes
Tasks for 1/3:
*Convert methods outline to text, looking for challenging sections
*Write 2 pages
*Devegetate areas, compare with ANOVA (smooth vs. smooth; rough vs. rough; smooth vs. rough)
*Find other textures for ANOVA
- clip
KB: Does ejecta look like rough lava?
*Keep working on code updates for holes
Run Kruskal-Wallace on a dataset of your choice. (slabby?)
*Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
*Fix stats code
Tasks for 12/20:
Convert methods outline to text, looking for challenging sections
*Write 1 page
*Devegetate areas, compare with ANOVA (smooth vs. smooth; rough vs. rough; smooth vs. rough)
*Find other textures for ANOVA
- clip
*Process KB SfM (Does ejecta look like rough lava?)
*Keep working on code updates for holes
Run Kruskal-Wallace on a dataset of your choice. (slabby?)
Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
Fix stats code
email Mike Downs for photos from ABC (lava pond)
Tasks for 12/17:
Convert methods outline to text, looking for challenging sections
*Write 1 page
*Clip areas, compare with ANOVA (smooth vs. smooth; rough vs. rough; smooth vs. rough)
*Find other textures for ANOVA
- clip
(on hold: SfM with Donna)
Clip out SfM squares
*Process KB SfM (Does ejecta look like rough lava?)
*Keep working on code updates for holes
Run Kruskal-Wallace on a dataset of your choice. (slabby?)
Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
Fix stats code
Tasks for 12/7:
Convert methods outline to text, looking for challenging sections
Write 2 pages
Clip areas, compare with ANOVA (smooth vs. smooth; rough vs. rough; smooth vs. rough)
Find and clip other textures for ANOVA
Continuing with SfM: talking with Donna about resolution shift and odd squares(?)
Process KB SfM (Does ejecta look like rough lava?)
Keep working on code updates for holes
Run Kruskal-Wallace on a dataset of your choice. (slabby?)
Read up on coefficient of variance/ANOVA in books Sarah recommended; type up notes and send to Shannon
Fix stats code
Tasks for 11/6:
Add more to outline
Write 2 pages this week
Refine trimming of holes in smooth
Enlarge areas used to compare similar texture anova
Continue to re-run Sfm
start working on adapting code to work around holes
Tasks for 11/2:
Add more to outline
Write 2 pages this week
*Finish coarse res rules for a'a vs. blocky
Finish paper summary/send to SKN
Schedule meeting with Sarah
Refine trimming of holes in smooth
Enlarge areas used to compare similar texture anova
Continue re-run SfM
start working on adapting code to work around holes, try to figure out what real process will be
Tasks for 10/30:
Finish ANOVA chapter
Add more to outline
Write 2 pages this week
*Finish coarse res rules for a'a vs. blocky
Summarize paper from last week
*Talk to Sarah about stats
Refine trimming of holes in smooth
Enlarge areas used to compare similar texture anova
Organize files, code between machines
*Re-run SfM
*Email Downs about 4 polygons for which we don't have raw images
start working on adapting code to work around holes, try to figure out what real process will be
(Daily emails)
Tasks for 10/23:
Read ANOVA chapter
finish list of papers
write 1 page
Continue to flesh out outline
*Finish a'a vs. blocky rules
Finish making list from key references, read/summarize 1
*add stddev to stats code, re-run
*refine trimming of holes in smooth
enlarge areas used to compare similar texture anova
organize files, code between machines
*email Donna to get instructions on how to not smooth in SfM
- *re-run images
Make a list of polygons for which we have data; differentiate between those with raw data and those with only processed data
(Daily email check-ins)
Talk to SKN about cliffs - do we want holes or to fill with minimum?
Tasks for 10/16:
(while working at Craters:)
Read ANOVA chapter
finish list of papers
write 1 page
if time: read/summarize 1 paper
Tasks for 10/9:
Continue to flesh out outline
Add 1+ page to intro text
Finish a'a vs. blocky rules
Finish making list from key references, read/summarize 1
add stddev to stats code, re-run
refine trimming of holes in smooth
enlarge areas used to compare similar texture anova
re-read about anova
organize files, code between machines
Tasks for 9/28:
Continue to flesh out outline
Add 1+ page to intro text
Finish a'a vs. blocky rules
Make list of new papers to read, only read 1 and write summary
Fix stats code
refine trimming of holes in smooth
enlarge areas used to compare similar texture anova
re-read about anova
Tasks for 9/14:
Outline paper
Rewrite stats code and run on combo files
Finish rules for distinguishing a'a-blocky
Review abstracts of papers
Mine paper citations for more papers to read
Write more rules for distinguishing textures
Tasks for 9/7:
Deal with remote desktop
Email MM
Fix ANOVA and run
Outline paper
Rerun stats on combo files
Finish rules for distinguishing a'a-blocky
Review abstracts of papers
Mine paper citations for more papers to read
Tasks for 8/31 (email):
fix bug in ANOVA code
- finish running ANOVA
5 guidelines to distinguish textures, within one given resolution
write a second page
Tasks for 8/24 (email):
fix bug in ANOVA code
- finish running ANOVA
5 guidelines to distinguish textures, within one given resolution
write a second page
Tasks for 8/17:
check within texture ANOVA on very similar and very dissimilar areas
check within texture ANOVA with more areas
5 guidelines to distinguish textures, within one given resolution
write a second page
mttg with MM
Tasks for 8/10:
ANOVA codes
fix ArcTools powerpoint, incl. scale
email to MM
1 page of research paper (any section)
Future: 5 guidelines to distinguish textures, within one given resolution
Tasks for 7/20:
fix discussed edits to ANOVA code (float before if-, etc.)
BACKUPS
**Filter interp draft to focus on the rules that best characterize each texture
** Hurst: found the error (log(0)) -- coordinate with MM to fix (need to make sure indices are consistent, etc.)
Write basic variance code
check out curvature, slope, and focal statistics tools in Arc
Continue daily check-in emails
Tasks for 7/12:
**finish python code for distributions, quartiles, ANOVA; run files
Put all important files into Drive folder
**Filter interp draft to focus on the rules that best characterize each texture
**Try correcting Hurst error - test using 1D, write statements
- check in with MM
- what does each variable mean?
Write basic variance code
*Finish reading ANOVA chapter in SKN's book, do example exercises
(future: check out curvature and focal statistics tools in Arc)
Continue daily check-in emails
Tasks for 6/29 (email):
**finish python code for distributions, quartiles, ANOVA; run files
Put all important files into Drive folder
**Filter interp draft to focus on the rules that best characterize each texture
**Hurst error? - test using 1D, write statements
- what does each variable mean?
Write basic variance code
*Finish reading ANOVA chapter in SKN's book, do example exercises
(future: check out curvature and focal statistics tools in Arc)
Continue daily check-in emails
NAGT presentations
Tasks for 6/14 (email):
finish python code for distributions, quartiles, ANOVA; run files
*write interpretive guide for differentiating between textures (bullets are fine)
- focus for now on existing RMS and AR data (means, stdevs)
- include figures for illustration
Hurst error? - test using 1D, write statements
- what does each variable mean?
Write basic variance code
Finish reading ANOVA chapter in SKN's book, do example exercises
(future: check out curvature and focal statistics tools in Arc)
NEW: Daily check-in emails: what you worked on and for how long.
Fix VPN problem while on campus
Tasks for 6/7:
check status on min, max, distributions of pixel values in processed images
figure out what's going on with RMS and AR data, curves & values
*write interpretive guide for differentiating between textures (bullets are fine)
- focus for now on existing RMS and AR data (means, stdevs)
- include figures for illustration
Hurst error? - test using 1D, write statements
- what does each variable mean?
Write basic variance code
(future: check out curvature and focal statistics tools in Arc)
Read ANOVA chapter in SKN's book, do example exercises
Tasks for 6/1 (skype):
check status on min, max, distributions of pixel values in processed images
figure out what's going on with RMS and AR data, curves & values
*write interpretive guide for differentiating between textures (bullets are fine)
- focus for now on existing RMS and AR data (means, stdevs)
- include figures for illustration
Hurst error? - test using 1D, write statements
- what does each variable mean?
Write basic variance code
(future: check out curvature and focal statistics tools in Arc)
Read ANOVA chapter in SKN's book, do example exercises
Tasks for 4/24 (email):
use TextureCam on DTM
write code to get min, max, etc.
figure out what's going on with RMS and AR data, curves & values
*write interpretive guide for differentiating between textures (bullets are fine)
- include figures for illustration
Test Hurst
Write basic variance code
(future: check out curvature and focal statistics tools in Arc)
read PW's paper on ANOVA
read Mars Hurst paper
Tasks for 4/20:
use TextureCam on DTM
write code to get min, max, etc.
figure out what's going on with RMS and AR data, curves & values
*write interpretive guide for differentiating between textures (bullets are fine)
- include figures for illustration
Test Hurst
read CoCo96
Write basic variance code
(future: check out curvature and focal statistics tools in Arc)
Tasks for 4/17:
use TextureCam on DTM
write code to get min, max, etc.
figure out what's going on with RMS and AR data, curves & values
*write interpretive guide for differentiating between textures (bullets are fine)
- include figures for illustration
Test Hurst on own laptop
Read CN paper on radar at COTM
Read Mars Hurst paper
WRITE ALLAN CODE
(future: check out curvature and focal statistics tools in Arc)
Tasks for 4/10:
use TextureCam on DTM
figure out what's going on with RMS and AR data, curves & values
*write interpretive guide for differentiating between textures (bullets are fine)
- include figures for illustration
Write abstract of Allen hat code
Read CN paper on radar at COTM
Read Mars Hurst paper
WRITE ALLAN CODE
finish travel paperwork (adjust per diem)
get Hurst code to compile & run
(future: check out curvature and focal statistics tools in Arc)
Tasks for 4/6:
continue working with TextureCam
*write interpretive guide for differentiating between textures (bullets are fine)
- include figures for illustration
Write abstract of Allen hat code
Read CN paper on radar at COTM
Read Mars Hurst paper
WRITE ALLAN CODE
file travel paperwork
work our Hurst problem
demonstrate overlaps of curves for different training areas, calculate confidence that they represent the same actual population
Graduate Research Symposium presentation
(future: check out curvature and focal statistics tools in Arc)
Tasks for 3/20:
finish and print LPSC posters
*write interpretive guide for differentiating between textures (bullets are fine)
- include figures for illustration
*make plots to show what's going on (label by resolution, presumed texture)
read up on Allan variance
- write an abstract of 1 paper (for Dispatches)
go through AreaRatio code and be able to explain
- actually comment the code
track down error in Hurst code (double precision causes negatives??) -> conversion between double and single??
Tasks for 3/6:
*make plots to show what's going on (label by resolution, presumed texture)
fix texturecam problem
read up on Allan variance
- write an abstract of 1 paper (for Dispatches)
go through AreaRatio code and be able to explain
- actually comment the code
*write interpretive guide for differentiating between textures (bullets are fine)
- include figures for illustration
finish IAVCEI first draft
*revise/revisit LPSC poster
*Write Colloquium presentation
track down error in Hurst code (double precision causes negatives??)
Tasks for 2/27:
Make map figure showing location of data sets
Remove holes from collapses/other pits (can do via a clip code)
Remove veg from smooth images (classify based on color, clip green stuff out)
Run code for moving window of consistent size (as opposed to consistent number of grid points)
compile outputs into single file, make plots to show what's going on (label by resolution, presumed texture)
fix texturecam problem
read up on Allan variance
go through AreaRatio code and be able to explain
write interpretive guide for differentiating between textures (bullets are fine)
start on IAVCEI abstract
revise/revisit LPSC poster
email MM to set up another meeting
Tasks for 2/21:
try texturecam with new label mask
read up on Allan variance
go through AreaRatio code and be able to explain
check a3 and bd2 status, send images of all areas to SKN
continue to refine classification thresholds
LPSC TA
Buy LPSC tickets and register
(next week: start on IAVCEI abstract)
revisit LPSC poster
Tasks for 2/13:
email RF about texturecam labels problem
Abstract edits
read up on Allan variance
go through AreaRatio code and be able to explain
double check squareness of edges for files sent to MM
re-email MM about square-square
submit graduate research symposium abstract
continue to refine classification thresholds
bring box plots showing a) categories for 10cm, b) categories for 50cm, c) categories for 1m, d) categories for 2m (must have caption that explains total area and number of images used for each)
Tasks for 2/6:
missing list stuff:
*texturecam: run it for regular vis, DTM, and hillshade
prospectus signatures and deliver to front office
test remote desktop; if still not working, get it fixed
for conversions, move files into one folder (make these copies, not originals)
organize files and folders
confirm files <15GB for Box share
read up on Allan variance
look for Arc methods of transposing data output
make sure your output files are square-square (send existing square-edged files to MM and ask if sufficient)
graduate research symposium abstract
*refine classification thresholds
bring box plots showing a) categories for 10cm, b) categories for 50cm, c) categories for 1m, d) categories for 2m (must have caption that explains total area and number of images used for each)
Tasks for 1/30:
missing list stuff:
texturecam: run it for regular vis, DTM, and hillshade
prospectus signatures and deliver to front office
talk to Diana about remote desktop problem
NAGT abstract: textures
email BLM about caves talk for NAGT
fix management code (python) for conversions
organize files and folders
ftp source for files on glacier (ask Diana)
send commented version of Allen deviation
{SKN read Dispatch}
start LPSC poster
look for Arc methods of transposing data output
make sure your output files are square-square
graduate research symposium abstract
Tasks for 1/23:
Review older task lists, looking for dropped threads
get remote desktop setup
email Alex about NAGT abstract partnership (how emplacement and physical properties result in morphology)
write rough draft abstract for NAGT
{SKN review resume}
resend Dispatch
{SKN read Dispatch}
fix Allen deviation code (will require back-and-forth with SKN)
run 10 more datasets to get classification breakpoints
Tasks for 1/17:
Complete 2 lpsc abstracts (must send for review 1/9)
When healthy enough to return to campus: schedule new meeting with SKN
Tasks for 10/28:
install and use software recommended by RF (see field notes)
install pscp
- transfer demo output off of Minerve and real input onto Minerve (read about file transfer for PuTTY)
bake cookies for IT crew
complete RMS code, including output testing.
Tasks for 10/21:
Email code stuff to MMG
Read through texture cam documentation to understand what it's doing and what you want
transfer demo output off of Minerve and real input onto Minerve (read about file transfer for PuTTY)
Comment RMS code and complete it
RMS code must be done by 10/21. (carrot: SKN buys lunch; stick: bake cookies for IT group)
Tasks for 10/3:
Test code for MMG
Add code to calculate smallStep and bigStep based on ad and minimum and maximum desired values in Hurst range
Run TextureCam on Minerve
Finish RMS code
Finish code Variable List
send map to SKN
Finish polishing edits to prospectus
New Dispatch: pick paper, read it, send it to SKN
finish edits for BB
Tasks for 9/27:
Finish fixing compiler issue
Run TextureCam on Minerve
- find out from MMG if you can run on headed, or how to submit job to back-end (SLURM?)
- if back-end, need to know how to install TextureCam on backend
Actually write RMS code
re-read Lescinsky et al. and update abstract
Start file on Drive that defines all important variables in code
Follow up with Ethan, search online of map
Revise prospectus (incorporate edits from SSH, DD)
Read papers from DD
See SKN about MS georef for Hawaii
Tasks for 9/20:
Coordinate data transfer with MD, possibly join in field
Contact MMG for help with code (send file showing errors)
Actually write RMS code
talk to COSE IT to get user access for large linux machine
- install texture cam on linux machine
read planetary lava flows paper, write abstract (send paper and abstract to SKN)
re-read Lescinsky et al. and update abstract
Dispatch: include title, citation, suggested tags, etc., revise
Start file on Drive that defines all important variables in code
Get georeferenced geo map either from online or Ethan
Revise prospectus (incorporate edits from SSH, DD)
email Brent/Pat about texture methods
Make schedule plan
Tasks for 9/13:
connect with MD over visit schedule
send SKN paper for discussion about decision trees
finish writing RMS code
talk to COSE IT to get user access for large linux machine
- install texture cam on linux machine
read planetary lava flows paper, write abstract (send paper and abstract to SKN)
re-read Lescinsky et al. and update abstract
Dispatch: include title, citation, suggested tags, etc., revise
Start file on Drive that defines all important variables in code
Get georeferenced geo map either from online or Ethan
Revise prospectus (incorporate edits from SSH, DD)
email Brent/Pat about texture methods
Tasks for 8/11:
Find out about remote login
- use cloud compare to remove veg
Email MD about image tiles (8/10)
send SKN paper for discussion about decision trees
convert RMS pseudocode into code
finish mapping code between versions, write bullet list of any issues as report for MMG
install dual boot
run texturecam
email MMG about getting access to linux machine for remote login with texturecam
(Remember to look at unstarred items from last week for next week's to-do list)
Tasks for 8/4:
*Submit AGU abstract
*Process Highway flow and Big Craters imagery
read planetary lava flows paper, write abstract (send paper and abstract to SKN)
*Invest at least 4 hours on BB revisions
re-read Lescinsky et al. and update abstract
Dispatch: include title, citation, suggested tags, etc., revise
*Read up on TextureCam
Organize Hawaii notes
*compile necessary information for writing code for RMS height
find out data structure for LANDSAT
check on Cs in code & in math - what is code computing? is it RMS slope?
*look at code - map math between versions, find things not used again, make sure accurate
*Contact Raymond Francis (and search LPSC content) re: texture cam
Georeference geologic map for overlay
Email DD about possible hyperspec flights for veg
Tasks for 7/29:
re-email Mike about point clouds and images; ask about possible dates for backup trip in September(?)
Process Highway flow and Big Craters imagery
(may need to email Donna about workflow?)
prepare FINESSE Travel Authorization with Kate
read planetary lava flows paper, write abstract (send paper and abstract to SKN)
Invest at least 4 hours on BB revisions
re-read Lescinsky et al. and update abstract
Dispatch: include title, citation, suggested tags, etc., revise
read another paper, self choice
Organize Hawaii notes
Meet with MMG & SKN
Pick next surface measurement to focus on, compile necessary information for writing code
Find out how to get HiRISE DTMs
find out data structured for LANDSAT
check on Cs in code & in math - what is code computing? is it RMS slope?
look at code - map math between versions, find things not used again, make sure accurate
Contact Raymond Francis (and search LPSC content) re: texture cam
Georeference geologic map for overlay
Email Brent about caves
Email DD about possible hyperspec flights for veg
Tasks:
actually send the emails.
edit prospectus/intro draft, send prospectus to comm
update goals
review/revise Dispatch
Buy screws (2), install in dgps; check antenna connection on rover head (email report to SKN and Donna D)
Do FINESSE travel authorization
email Michael McGregor, schedule meeting to discuss code
read planetary lava flows paper, write abstract (send paper and abstract to SKN)
If time: keep writing intro/background
Tasks:
update goals list
send SKN images showing where grids extracted from DTMs
email MD about point clouds and original images
write comparison/contrast on FT methods
write Dispatch
{edit prospectus, ch 1}
send draft to BB!!
edit abstract
Tasks:
start EdEx
more edits for BB (min. 30-60 min/day) Bring time log
confirm DTM conversion good (top priority)
- send to SKN asap
- convert the others
pick new paper and read for Dispatch
Montserrat stuff DUE Monday
finish prospectus edits
read Fourier paper
write draft of intro/background sections of paper
- pick your intended journal
- figure out page limits, other key guidelines
Tasks:
test m-scale image on fancy program
start EdEx (do first half week)
more edits for BB
convert DTM to text file (x, y, z)
email text file to MM
pick new paper and read for Dispatch
rate alteration in xgds
Email DD for committee
(eventually: check on xdgs DTM - what happened?)
Tasks for 4/25:
test m-scale image on fancy program
start EdEx (do first half week)
more edits for BB
convert DTM to text file (x, y, z)
pick new paper and read for Dispatch
rate alteration in xgds
Tasks for 4/18:
test m-scale image processing for point cloud. Test on rock, other surface
look up signal processing (which semester?); chat with Meghan; check EdEx, etc.
- if online resources: start learning
research self-affine fractals; use educational resources, not primary literature
continue editing with BB
convert DTM to text file (x, y, z)
3/28/14:
do the thing SKN told you to do at LPSC
Tasks for 3/14:
unzip DTM folder
{review email to CN}
read/write abstract about matlab paper (send copy to SKN)
read Turcott selections, write notes
read Mandlebrot (sp?), take notes
revise LPSC poster (x2)
meet with DD about veg removal
check deadlines of fellowship app
draft email to MD (send to SKN) about vegetation extraction, holes
Complete 1 page on BB text
{follow up with MD about flights}
Tasks for 3/7:
Add your DTM to ISU BASALT folder
{SKN read Hurst, equations report}
read/write abstract about matlab paper (send copy to SKN)
draft email to CN, send to SKN
read Turcott selections, write notes
read Mandlebrot (sp?), take notes
revise and submit GSA abstract (email to co-authors, make sure they know what sort of conference we're talking about)
revise LPSC poster
attempt vegetation removal (IQ station)
read and brainstorm for fellowship app
Tasks for 2/29:
write explanation of 2D Hurst (give sources)
list other useful equations, explain benefits of each (including Hurst)
add 2014 data to dgps stash in Drive
follow up with DD re: vegetation removal
send SKN draft of LPSC poster
write RM GSA abstract
read/write abstract about matlab paper (send copy to SKN)
decide by Friday re: code
run code for lines used in CN paper to confirm acceptability
run other lines in code if acceptable
send stuff to CN
Tasks for 2/23:
write explanation report for Morris vs. Hurst equations (convince SKN)
fix DTM corners
send stuff to CN
email Donna about green vegetation extraction (send you a paper?)
send updated dtm to DL (test on another machine)
FTIR guide (start it, write headers and key useful questions, fill in as much as possible)
Tasks for 2/16:
Read Shepherd (2001) for 2D Hurst
write abstract
finish commenting code
Send SKN email with contact info for COM (will forward with additional comments to Linda)
fig of proposed area (BC)
fig of UAS data vs GE data
Highlight points that SKN should talk about (accessibility, impact, need, how long it would take to get imagery, etc.)
FIGURE OUT 2D HURST
curate at least 1 DTM to put into clean data rectangle
run DGPS and DTM lines through f90 code, send to CN (table with H for DGPS, real path DTM, intended path DTM)
vegetation extraction
send your DTM to David L (xgds) for upload
Tasks for 2/9:
Read Morris paper and write abstract
Study code and thoroughly document (with comments)
Click submit in BengalWeb
Send SKN email with contact info for COM
fig of proposed area (BC)
fig of UAS data vs GE data
Highlight points that SKN should talk about (accessibility, impact, need, how long it would take to get imagery, etc.)
Get XDGS account
Diagram expansion 2D Hurst code
Dispatch article
Tasks for 2/2:
Talk to CN about Hurst in code (cc SKN)
talk to MF about code
ind 2D Hurst paper for reading w/ SKN
register for LPSC and get flights (see Kate about travel authorization)
Feel out COTM about possible flight
longer term: work with CB on FTIR guide
travel authorization for LPSC
Tasks for 1/26:
Finalize and send work calendar
Talk to CN about Hurst in code (cc SKN)
talk to MF about code
Send LK photos from Arco today (1/21)
find 2D Hurst paper for reading w/ SKN
register for LPSC and get flights (see Kate about travel authorization)
Feel out COTM about possible flight
Clip and send converted images (1/21)
longer term: work with CB on FTIR guide
Tasks for 1/12:
make work calendar, send to SKN
{SKN play with f90 version of code}
test data extraction for 1 or 10 m (use link SKN sent)
search/read up on 2D code for Hurst
email SKN with possible meeting times for Spring sem.
Tasks for 12/7:
run Hurst code
send stuff to CN
read lunar paper and write abstract
pick out dispatch paper and write outline
extract DTM route values
re-do 6m raster for comparison
- try to compare surface area to flat area within boundary footprint
Tasks for 11/30:
convert Dispatch outline to text
look up 2D Hurst methodology
finish Rosenburg paper (use for Hurst hunt)
- write abstract
check slopes/intercepts in detrending work
- work flow: cut transects for consistent distance or start/end position (and remove flow boundary steps), detrend, calculate Hurst (consider using code)
commit to schedule
Tasks for 11/23:
write Dispatch draft
look up 2D Hurst coefficient or alternative approaches
read Rosenburg et al. (2011)
finish DTM vs dGPS figures/analysis
confirm imagery and upload to Drive
email SKN full schedule
email CN to confirm L0 for comparison with her lines (cc SKN)
commit to at least five 25-min writing sessions this week
{SKN: email CN and HM about 2D roughness analysis and resampling}
Tasks for 11/16:
write Dispatch draft
work on Hurst coefficient, contact CN with questions if necessary
send MD an email about vertical accuracy from photogrammetry, also send your DTMs as soon as made
plot figure showing detrended DGPS topography, DTM intended route topography, and DTM actual route topography for comparison
double check orthoimagery basemap
bring draft of weekly schedule showing classes, homework time, research time, rec time, etc.
Tasks for 11/9:
write Dispatch draft
work on Hurst coefficient, contact CN with questions if necessary
send MD an email about vertical accuracy from photogrammetry, also send your DTMs as soon as made
plot figure showing detrended DGPS topography, DTM intended route topography, and DTM actual route topography for comparison
double check orthoimagery basemap
put SG's Tuesday office hour in personal calendar
Tasks for 10/19 (via email):
(SKN gone 19 - 28)
Prepare flight paths & get reviewed by NPS
watch for reply from Jen & Mike
add a column for samples that we do/don't have in ArcMap
populate the notes with rock observations
pick and read new dispatch paper
look at roughness in DTM (along transects, parallel to transects, perpendicular to transects, etc.)
send MD an email about vertical accuracy
look up (and add?) hurst coefficient
add the right NAIP
Tasks for 10/12:
update permit request
recontact regarding UAS permit
{contact re: EOP}
fix projection
minor updates to Dispatch -- send to SKN when done (send figs as separate files)
continue dgps analysis, prep short presentation for SKN
Tasks for 9/28:
install Drive on DML account
try running Arc using files in Drive folder
edit Dispatch
contact Carrie about Arc problem, tell Carrie Shannon will buy her lunch for her time and effort
add ASD position data
(waiting on FTIR data for download from machine)
add ogive zone to permit list; remove wilderness sites
call RM about education/outreach proposal
Tasks for 9/21:
work with installable Drive to see if Arc will communicate across synced folder
may need to check with Diana about Drive installation on DML account
finish Dispatch draft
Finish permit course
Priority 1: cross check sample location data (physically and plot in Arc)
Add ASD/FTIR to coordinates spreadsheet
resend P&T (1980)
Check with COTM about wilderness area possibilities and proximity to road
Tasks for 9/14 (9/7 is Labor Day):
email SKN update on ~9/8
write Dispatch
keep searching for JD, get raw data
read paper group manuscripts, prep for discussion
Overlay map of all MD's DTM footprints over NAIP; draw polygons of interest for own flights; be ready to defend selections (leads to permit update)
Finish permit course
Top priority: prioritize sample location list, FTIR list, ASD list
experiment with keeping Arc files in Drive
request VPN (online form through CoSETech)
recommend ~2 papers for reading group (before 9/8)
send Peterson and Tilling (1980) ASAP
Tasks for 8/31:
populate webpage
pick a recent paper and write 1st draft of Dispatch
hunt down JD to get pXRF raw data for meeting Tuesday (1)
read paper group manuscripts, prep for discussion
contact MD about getting DTMs; at minimum, we need the footprint areas
talk to DD about COTM flight access
complete permit training
continue transcribing notebooks
