A full list of publications is available on Google Scholar and Pubmed Bibliography.
2026
T Moreno-Rodriguez, M Zhang, A Lundberg, R Shrestha, M Sjöström, A Pasam, J Chan, L Devereux, A Foye, X Zhu, AS Weinstein, AS Trigos, AW Wyatt, JJ Alumkal, EJ Small, R Aggarwal, SM Dehm, ML Bootsma, SG Zhao, M Lupien, FY Feng, S Sandhu#, DA Quigley#. Genome Biology, 2026
2025
H Li, JE Melnyk, BXH Fu, R Shrestha, M Zhang, M Sjöström, S Feng, JA Anderson, W Han, LN Chesner, HJ Shin, T Farsh, HJ Suarez, S Nath, J Chou, R Das, EA Egusa, M Calvert, A Kishishita, A Barpanda, J Zhu, A Maheshwari, WS Chen, M Alshalalfa, A Winters, JT Hua, T Liu, E Davicioni, AP Wiita, BA Stohr, J Siddiqui, B Huang, EJ Small, KM Shokat, PS Nelson, DA Quigley, EV Wasmuth, LA Gilbert, FY Feng. Nature Genetics, 2025, 1-12
Exploitable mechanisms of antibody and CAR mediated macrophage cytotoxicity
T Liu, M Zhang, T Farsh, H Li, A Kishishita, A Barpanda, S Leung, J Zhu, H Jung, JT Hua, X Zhu, AB Kim, YA Goo, M Son, J Kim, A Subramanian, M Sjöström, KC Fuh, JS Chapman, J Carnevale, LA Gilbert, A Lakkaraju, P Bruno, DA Qguigley, A Wiita, FY Feng, CJ DeSelm. Nature Communications, 2025, 16 (1), 5616
Comparative characterization of human accelerated regions in excitatory neurons
X Cui*, H Yang*, C Cai, C Bearman, X Yang, H Liu, X Ren, Z Amador, IR Jones, KC Keough, M Zhang, T Fair, A Abnousi, S Mishra, Z Ye, M Hu, AA Pollen, KS Pollard, Y Shen. Nature, 2025, 1-9
2024
Synthetic lethal targeting of CDK12-Deficient prostate cancer with PARP inhibitors
J Chou, TM Robinson*, EA Egusa*, R Lodha, M Zhang, M Badura, M Mikayelyan, HM Delavan, J Swinderman, C Wilson, J Zhu, R Das, M Nguyen, A Loehr, T Golsorkhi, A Simmons, W Abida, AM Chinnaiyan, MR Arkin, EJ Small, DA Quigley, L Yang, M Kim, A Ashworth, FY Feng. Clinical Cancer Research, 2024, DOI: 10.1158/1078-0432.CCR-23-3785
Y Yang, ML Badura, PC O’Leary, HM Delavan, TM Robinson, EA Egusa, X Zhong, JT Swinderman, H Li, M Zhang, M Kim, A Ashworth, FY Feng, J Chou, L Yang. Nature Cancer, 2024, 1-17
SG Zhao*, M Bootsma*, S Zhou*, R Shrestha, T Moreno-Rodriguez, A Lundberg, C Pan, C Arlidge, J Hawley, A Foye, AS Weinstein, M Sjöström, M Zhang, H Li, L Chesner, NR Rydzewski, K Helzer, Y Shi, WCDT Consortium, M Lynch, S Dehm, J Lang, JJ Alumkal, HH He, A Wyatt, R Aggarwal, W Zwart, EJ Small, DA Quigley, M Lupien, FY Feng. Nature Genetics, 2024, 1-12
X Zhu, T Farsh, D Vis, I Yu, H Li, T Liu, M Sjöström, R Shrestha, J Kneppers, T Severson, M Zhang, A Lundberg, T Moreno-Rodriguez, AS Weinstein, A Foye, N Mehra, R Aggarwal, AM Bergman, EJ Small, NA Lack, W Zwart, DA Quigley, MS van der Heijden, FY Feng. Journal of Clinical Investigation, 2024,134 (19)
R Shrestha, L Chesner, M Zhang, S Zhou, A Foye, A Lundberg, AS Weinstein, M Sjöström, X Zhu, T Moreno-Rodriguez, H Li, The SU2C/PCF WCDT Team, JJ Alumkal, RR Aggarwal, EJ Small, M Lupien, DA Quigley, FY Feng. Cancer Research, 2024, DOI: 10.1158/0008-5472.CAN-24-0890
M Zhang, M Sjöström, X Cui, A Foye, K Farh, R Shrestha, A Lundberg, HX Dang, H Li, PG Febbo, R Aggarwal, J Alumkal, EJ Small, The SU2C/PCF WCDT Team, CA Maher, FY Feng, DA Quigley. Nature Cell Biology, 2024, 1-11
D Saha, HX Dang, M Zhang, DA Quigley, FY Feng, CA Maher. NPJ Genomic Medicine, 2024, 9 (1), 14
2023
The genomic and epigenomic landscape of double-negative metastatic prostate cancer
A Lundberg, M Zhang, R Aggarwal, H Li, L Zhang, A Foye, M Sjöström, J Chou, K Chang, T Moreno-Rodriguez, R Shrestha, A Baskin, X Zhu, AS Weinstein, N Younger, JJ Alumkal, TM Beer, KN Chi, CP Evans, M Gleave, PN Lara, RE Reiter, MB Rettig, ON Witte, AW Wyatt, FY Feng#, EJ Small#, DA Quigley#. Cancer Research, 2023, CAN-23-0593
2022
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer
M Sjöström*, SG Zhao*, S Levy*, M Zhang*, Y Ning, R Shrestha, A Lundberg, C Herberts, A Foye, R Aggarwal, JT Hua, H Li, A Bergamaschi, C Maurice-Dror, A Maheshwari, S Chen, SWS Ng, W Ye, J Petricca, M Fraser, L Chesner, MD Perry, T Moreno-Rodriguez, WS Chen, JJ Alumkal, J Chou, AK Morgans, TM Beer, GV Thomas, M Gleave, P Lloyd, T Phillips, E McCarthy, MC Haffner, A Zoubeidi, M Annala, RE Reiter, MB Rettig, ON Witte, L Fong, R Bose, FW Huang, J Luo, A Bjartell, JM Lang, NP Mahajan, PN Lara, CP Evans, PT Tran, EM Posadas, C He, XL Cui, J Huang, W Zwart, LA Gilbert, CA Maher, PC Boutros, KN Chi, A Ashworth, EJ Small, HH He#, AW Wyatt#, DA Quigley#, FY Feng#. Cancer Research, 2022, 82 (21), 3888-3902 *co-first author
2020
The DNA methylation landscape of advanced prostate cancer
SG Zhao*, WS Chen*, H Li*, A Foye, M Zhang, M Sjöström, R Aggarwal, D Playdle, A Liao, JJ Alumkal, R Das, J Chou, JT Hua, TJ Barnard, AM Bailey, ED Chow, MD Perry, HX Dang, R Yang, R Moussavi-Baygi, L Zhang, M Alshalalfa, SL Chang, KE Houlahan, YJ Shiah, TM Beer, G Thomas, KN Chi, M Gleave, A Zoubeidi, RE Reiter, MB Rettig, O Witte, MY Kim, L Fong, DE Spratt, TM Morgan, R Bose, FW Huang, H Li, L Chesner, T Shenoy, H Goodarzi, IA Asangani, S Sandhu, JM Lang, NP Mahajan, PN Lara, CP Evans, P Febbo, S Batzoglou, KE Knudsen, HH He, J Huang, W Zwart, JF Costello, J Luo, SA Tomlins, AW Wyatt, SM Dehm, A Ashworth, LA Gilbert, PC Boutros, K Farh, AM Chinnaiyan, CA Maher, EJ Small, DA Quigley, FY Feng. Nature Genetics, 2020, 52 (8), 778-789
Prior to 2020
Post-Transcriptional Regulation of Mouse Neurogenesis by Pumilio Proteins
M Zhang, D Chen, J Xia, W Han, X Cui, N Neuenkirchen, G Hermes, N Sestan, H Lin. Genes & Development, 2017, 31 (13), 1354-1369
Adult human megakaryocyte-erythroid progenitors are in the CD34+CD38mid fraction
C Sanada, J Xavier-Ferrucio, YC Lu, E Min, PX Zhang, S Zou, E Kang, M Zhang, G Zerafati, PG Gallagher, DS Krause. Blood, The Journal of the American Society of Hematology 2016, 128 (7), 923-933