Publications

in English (peer-reviewed)

Toward mechanisms underlying the developmental hourglass: evolvability and phylotypic conservation.

Yui Uchida* & Naoki Irie*

EvoDevo, 2025 Dec 2

Meeting Report: The First Evo‐Devo Young Researchers Meeting

Uchida Y*, Ishida T, Ono S, Kuroda S, Kobayashi A, Konno N, Tanaka Y, Nishizawa T, Yoshida J, Yoshimoto KI & Yoneda M.

Development, Growth & Differentiation, 2025 Aug;67(6):331-335.

Deciphering the origin of developmental stability: The role of intracellular expression variability in evolutionary conservation

Yui Uchida*, Masato Tsutsumi, Shunsuke Ichii, Naoki Irie & Chikara Furusawa

Evolution & Development, e12473 (2024)

Stability in gene expression and body-plan development leads to evolutionary conservation

Yui Uchida*, Hiroyuki Takeda, Chikara Furusawa & Naoki Irie*

EvoDevo, 14 (4) (2023)

Wickerhamiella bidentis sp. nov., a novel yeast species isolated from flowers and insects in Japan

Seike T, Takekata H, Uchida Y, Sakata N, Furusawa C & Matsuda F

International Journal of Systematic and Evolutionary Microbiology, 73(3) (2023)

Potential contribution of intrinsic developmental stability toward body plan conservation

Yui Uchida*, Shuji Shigenobu, Hiroyuki Takeda, Chikara Furusawa & Naoki Irie* 

BMC Biology, 20, 82(2022)

Press release: 動物の形態進化は、「体づくり過程の変化しにくさ」に制限されてきた  (Apr. 11th, 2022)

Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms 

Jason Cheok Kuan Leong*, Yongxin Li, Masahiro Uesaka, Yui Uchida, Akihito Omori, Meng Hao , Wenting Wan, Yang Dong, Yandong Ren, Si Zhang, Tao Zeng, Fayou Wang, Luonan Chen, Gary Wessel, Brian T Livingston, Cynthia Bradham, Wen Wang & Naoki Irie*

Frontiers in Cell and Developmental Biology, 9:749963 (2021)

Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms

Yongxin Li, Akihito Omori, Rachel L. Flores, Sheri Satterfield, Christine Nguyen, Tatsuya Ota, Toko Tsurugaya, Tetsuro Ikuta, Kazuho Ikeo, Mani Kikuchi, Jason C. K. Leong, Adrian Reich, Meng Hao, Wenting Wan, Yang Dong, Yaondong Ren, Si Zhang, Tao Zeng, Masahiro Uesaka, Yui Uchida, Xueyan Li, Tomoko F. Shibata, Takahiro Bino, Kota Ogawa, Shuji Shigenobu, Mariko Kondo, Fayou Wang, Luonan Chen, Gary Wessel, Hidetoshi Saiga, R. Andrew Cameron, Brian Livingston, Cynthia Bradham, Wen Wang* & Naoki Irie* 

Communications Biology, 3(1), 371. (2020)

Embryonic lethality is not sufficient to explain hourglass-like conservation of vertebrate embryos 

Yui Uchida*, Masahiro Uesaka, Takayoshi Yamamoto, Hiroyuki Takeda & Naoki Irie*

EvoDevo 9:7 (2018)

Centromere evolution and CpG methylation during vertebrate speciation 

Kazuki Ichikawa, Shingo Tomioka, Yuta Suzuki, Ryohei Nakamura, Koichiro Doi, Jun Yoshimura, Masahiko Kumagai, Yusuke Inoue, Yui Uchida, Naoki Irie, Hiroyuki Takeda* & Shinich Morishita*

Nature Communications 1833 (2017)

in Japanese (not peer-reviewed)

時空間ダイナミクス解析が拓く，発生生物学と学際応用の新世界

内田 唯、入江 直樹

実験医学 Vol.44 No.1 (2025)

集えよ悩めよEvo-Devo学徒

内田 唯

実験医学 Vol.43 No.9 (2025)

脊椎動物胚発生の揺らぎと進化的保存性 

内田 唯、入江 直樹

細胞　Vol.55 No.3 (2023)

発生進化の法則性と謎 -発生砂時計モデル- 

内田 唯、入江 直樹

生体の科学　Vol.66 No.3 (2015)