Publications

For bibliometrics, see Thomas's google scholar profile. You can find a summary of our research contributions here. Links to our software are available here & github.

Preprints

1. Sex differences in the functional network underpinnings of psychotic-like experiences in children. Dhamala E, Chopra S, Ooi LQR, Rubio JM, Yeo BTT, Malhotra AK, Holmes AJ. [preprint]
2. A multidimensional investigation of sleep and biopsychosocial profiles with associated neural signatures. Perrault AA*, Kebets V*, Kuek NMY, Cross NE, Tesfaye R, Pomares FB, Li J, Chee MWL, Dang-Vu TT, Yeo BTT. [preprint]
3. MRI economics: Balancing sample size and scan duration in brain wide association studies. Ooi LQR, Orban C, Nichols TE, Zhang S, Tan TWK, Kong R, Marek S, Dosenbach NUF, Laumann T, Gordon EM, Zhou JH, Bzdok D, Eickhoff SB, Holmes AJ, Yeo BTT. [preprint]
4. Lower motor performance is linked with poor sleep quality, depressive symptoms, and grey matter volume alterations. Küppers V, Bi H, Nicolaisen-Sobesky E, Hoffstaedter F, Yeo BTT, Drzezga A, Eickhoff SB, Tahmasian M. [preprint]
5. High-effect gene-coding variants impact cognition, mental well-being, and neighborhood safety substrates in brain morphology. Kopal J, Huguet G, Marotta J, Aggarwal S, Osayande N, Kumar K, Saci Z, Jean-Louis M, Chai XJ, Ge T, Yeo BTT, Thompson PM, Bearden CE, Andreassen OA, Jacquemont S, Bzdok D. [preprint]
6. Benchmarking methods for mapping functional connectivity in the brain. Liu Z-Q, Luppi AI, Hansen JY, Tian YE, Zalesky A, Yeo BTT, Fulcher BD, Misic B. [preprint]
7. Protective role of parenthood on age-related brain function in mid- to late-life. Orchard ER*, Chopra S*, Ooi LQR, Chen P, An L, Jamadar SD, Yeo BTT, Rutherford HJV, Holmes AJ. [preprint]
8. Eigenmodes of the brain: revisiting connectomics and geometry. Sina Mansour L, Behjat H, De Ville DV, Smith RE, Yeo BTT, Zalesky A. [preprint]
9. Intrinsic structural covariation links cerebellum subregions to the cerebral cortex. Wang Z, Diedrichsen J, Saltoun K, Steele C, Arnold-Anteraper SR, Yeo BTT, Schmahmann J, Bzdok D. [preprint]
10. Rate of brain aging associates with future executive function in Asian children and older adults. Cheng SF, Yue WL, Ng KK, Qian X, Liu S, Tan TWK, Nguyen KN, Leong RLF, Hilal S, Cheng CY, Tan AP, Law EC, Gluckman PD, Chen CLH, Chong YS, Meaney MJ, Chee M, Yeo BTT, Zhou JH. [preprint]
11. DeepResBat: deep residual batch harmonization accounting for covariate distribution differences. An L, Zhang C, Wulan N, Zhang S, Chen P, Ji F, Ng KK, Chen C, Zhou JH, Yeo BTT. [preprint]
12. Translating phenotypic prediction models from big to small anatomical MRI data using meta-matching. Wulan N, An L, Zhang C, Kong R, Chen P, Bzdok D, Eickhoff SB, Holmes AJ, Yeo BTT. [preprint]
13. Multilayer meta-matching: translating phenotypic prediction models from multiple datasets to small data. Chen P, An L, Wulan N, Zhang C, Zhang S, Ooi LQR, Kong R, Chen J, Wu J, Chopra S, Bzdok D, Eickhoff SB, Holmes AJ, Yeo BTT. [preprint]
14. Functional brain networks are associated with both sex and gender in children. Dhamala E, Bassett DS, Yeo BTT, Homes AJ. [preprint]
15. Attention network drives cortical maturation linked to childhood cognition. Dong HM, Zhang XH, Labache L, Zhang S, Ooi LQR, Yeo BTT, Holmes AJ*, Zuo XN*. [preprint]
16. Distinct brain network features predict internalizing and externalizing traits in children and adults. Qu YL, Chen J, Tam A, Ooi LQR, Dhamala E, Cocuzza C, Lawhead C, Yeo BTT, Holmes AJ. [preprint]
17. Multimodal neural correlates of childhood psychopathology. Kebets V, Piguet C, Chen J, Ooi LQR, Kirschner M, Siffredi V, Misic B, Yeo BTT*, Bernhardt BC*. [preprint]
18. Widespread neural and autonomic system synchrony across the brain-body axis. Bolt T, Wang S, Nomi JS, Setton R, Gold BP, Frederick Bd, Yeo BTT, Chen JJ, Picchioni D, Spreng RN, Keilholz SD, Uddin LQ*, Chang C*. [preprint]
19. Reliable and generalizable brain-based predictions of cognitive functioning across common psychiatric illness. Chopra S, Dhamala E, Lawhead C, Ricard JA, Orchard ER, An L, Chen P, Wulan N, Kumar P, Rebenstein A, Moses J, Chen L, Levi P, Aquino K, Fornito A, Harpaz-Rotem I, Germine LT, Baker JT, Yeo BTT, Holmes AJ. [preprint]

Journals / Perspectives (* Equal Contributions)

1. In vivo whole-cortex marker of excitation-inhibition ratio indexes cortical maturation and cognitive ability in youth. Zhang S*, Larsen B*, Sydnor VJ, Zeng T, An L, Yan X, Kong R, Kong X, Gur RC, Gur RE, Moore TM, Wolf DH, Holmes AJ, Xie Y, Zhou JH, Fortier MV, Tan AP, Gluckman P, Chong YS, Meaney MJ, Deco G, Satterthwaite TD*, Yeo BTT*. Proceedings of the National Academy of Sciences, 121(23):e2318641121. doi: doi:10.1073/pnas.2318641121, 2024 [free download]
2. Gradients of Brain Organization: Smooth Sailing from Methods Development to User Community. Royer J, Paquola C, Valk SL, Kirschner M, Hong S-J, Park B-y, Bethlehem RAI, Leech R, Yeo BTT, Jefferies E, Smallwood J, Margulies D, Bernhardt BC. Neuroinformatics. doi: 10.1007/s12021-024-09660-y, 2024 [pdf]
3. Organization of the human cerebral cortex estimated within individuals: networks, global topography, and function. Du J*, DiNicola LM*, Angeli PA*, Saadon-Grosman N, Sun W, Kaiser S, Ladopoulou J, Xue A, Yeo BTT, Eldaief MC, Buckner RL. J Neurophysiol, 131(6):1014-1082. doi: 10.1152/jn.00308.2023, 2024 [free download]
4. Systematic cross-sectional age-associations in global fMRI signal topography. Nomi JS, Bzdok D, Li J, Bolt T, Chang C, Kornfeld S, Goodman ZT, Yeo BTT, Spreng RN, Uddin LQ. Imaging Neuroscience, 2:1-13. doi: 10.1162/imag_a_00101, 2024 [free download]
5. Macroscale intrinsic dynamics are associated with microcircuit function in focal and generalized epilepsies. Yang S, Zhou Y, Peng C, Meng Y, Chen H, Zhang S, Kong X, Kong R, Yeo BTT, Liao W, Zhang Z. Communications Biology, 7(1), 145. doi: 10.1038/s42003-024-05819-0, 2024 [free download]
6. Differential spatial working memory-related functional network reconfiguration in young and older adults. Yue WL, Ng KK, Liu S, Qian X, Chong JSX, Koh AJ, Ong MQW, Ting SKS, Ng ASL, Kandiah N, Yeo BTT, Zhou JH. Network Neuroscience, 1-56. doi: 10.1162/netn_a_00358, 2024 [free download]
7. A critical period plasticity framework for the sensorimotor–association axis of cortical neurodevelopment. Larsen B, Sydnor VJ, Keller AS, Yeo BTT, Satterthwaite TD. Trends in Neurosciences, 46 (10): 847-862. doi: 10.1016/j.tins.2023.07.007, 2023 [pdf]
8. Nocturnal Blood Pressure Estimation from Sleep Plethysmography Using Machine Learning. Yilmaz G, Lyu X, Ong JL, Ling LH, Penzel T, Yeo BTT*, Chee MWL*. Sensors, 23 (18): 7931. doi: 10.3390/s23187931, 2023 [free download]
9. Language network lateralization is reflected throughout the macroscale functional organization of cortex. Labache L, Ge T, Yeo BTT, Holmes AJ. Nature Comms, 14: 3405. doi: 10.1038/s41467-023-39131-y, 2023 [free download]
10. Controversies and progress on standardization of large-scale brain network nomenclature. Uddin LQ, Betzel RF, ... Yeo BTT, Spreng RN. Network Neuroscience, 7 (3): 864–905. doi: 10.1162/netn_a_00323, 2023 [free download]
11. Brain-based predictions of psychiatric illness-linked behaviors across the sexes. Dhamala E, Ooi LQR, Chen J, Ricard JA, Berkeley E, Chopra S, Qu Y, Zhang X, Lawhead C, Yeo BTT, Holmes AJ. Biological Psychiatry, 94 (6): 479-491. doi: 10.1016/j.biopsych.2023.03.025, 2023 [pdf]
12. Reply to: Multivariate BWAS can be replicable with moderate sample sizes. Tervo-Clemmens B, Marek S, Chauvin RJ, Van AN, Kay BP, Laumann TO, Thompson WK, Nichols TE, Yeo BTT, Barch DM, Luna B, Fair DA, Dosenbach NUF. Nature, 615, E8–E12. doi: 10.1038/s41586-023-05746-w, 2023 [free download]
13. Mapping human brain charts cross-sectionally and longitudinally. Di Biase MA, Tian YE, Bethlehem RAI, Seidlitz J Alexander-Bloch AF, Yeo BTT, Zalesky A. Proceedings of the National Academy of Sciences USA. 120 (20): e2216798120. doi: 10.1073/pnas.2216798120, 2023. [free download]
14. Relationship Between Prediction Accuracy and Feature Importance Reliability: an Empirical and Theoretical Study. Chen J*, Ooi LQR*, Tan TWK, Zhang S, Li J, Asplund CL, Eickhoff SB, Bzdok D, Holmes AJ, Yeo BTT. Neuroimage, 274, 120115. doi: 10.1016/j.neuroimage.2023.120115, 2023 [free download]
15. Comparison Between Gradients and Parcellations for Functional Connectivity Prediction of Behavior. Kong R, Tan YR, Wulan N, Ooi LQR, Farahibozorg S-R, Harrison S, Bijsterbosch JD, Bernhardt BC, Eickhoff SB, Yeo BTT. Neuroimage, 273, 120044. doi:10.1016/j.neuroimage.2023.120044, 2023 [free download]
16. Homotopic local-global parcellation of the human cerebral cortex from resting-state functional connectivity. Yan X, Kong R, Xue A, Yang Q, Orban C, An L, Holmes AJ, Qian X, Chen J, Zuo XN, Zhou JH, Fortier MV, Tan AP, Gluckman P, Chong YS, Meaney M, Bzdok D, Eickhoff SB, Yeo BTT. Neuroimage, 273, 120010. doi: 10.1016/j.neuroimage.2023.120010, 2023 [free download]
17. The impact of regional heterogeneity in whole-brain dynamics in the presence of oscillations. Perl YS, Zamora-Lopez G, Montbrió E, Monge-Asensio M, Vohryzek J, Fittipaldi S, Campo CG, Monguilner S, Ibañez A, Tagliazucchhi E, Yeo BTT, Kringelbach M, Deco G. Network Neuroscience, 7(2): 632-660. doi: 10.1162/netn_a_00299, 2023 [free download]
18. The arrow of time of brain signals in cognition: Potential intriguing role of parts of the default mode network. Deco G, Perl YS, de la Fuente L, Sitt JD, Yeo BTT, Tagliazucchhi E, Kringelbach M. Network Neuroscience, 7(3): 966-998. doi: 10.1162/netn_a_00300, 2023 [free download]
19. Adherence to 24-Hour Movement Recommendations and Health Indicators in Early Adolescence: Cross-Sectional and Longitudinal Associations in the Adolescent Brain Cognitive Development Study. Fung H, Yeo BTT, Chen C, Lo JC, Chee MWL, Ong JL. Journal of Adolescent Health, 72(3): 460-470. doi: 10.1016/j.jadohealth.2022.10.019, 2023 [pdf]
20. One Size Does Not Fit All: Methodological Considerations for Brain-Based Predictive Modeling in Psychiatry. Dhamala E, Yeo BTT, Holmes AJ. Biological Psychiatry, 93(8): 717-728. doi: 10.1016/j.biopsych.2022.09.024, 2023 [free download]
21. Leveraging machine learning for gaining neurobiological and nosological insights in psychiatric research. Chen J, Patil KR, Yeo BTT, Eickhoff SB. Biological Psychiatry, 93(1): 18-28. doi: 10.1016/j.biopsych.2022.07.025, 2023 [pdf]
22. A cross-cohort replicable and heritable latent dimension linking behaviour to multi-featured brain structure. Nicolaisen-Sobesky E, Mihalik A, Kharabian-Masouleh S, Ferreira FS, Hoffstaedter F, Schwender H, Maleki Balajoo S, Valk SL, Eickhoff SB, Yeo BTT, Mourao-Miranda J, Genon G. Communications biology. 5, 1297. doi: 10.1038/s42003-022-04244-5, 2022 [free download]
23. Dissociable brain structural asymmetry patterns reveal unique phenome-wide profiles. Saltoun K, Adolphs R, Paul LK, Sharma V, Diedrichsen J, Yeo BTT, Bzdok D. Nature Human Behaviour. 7, 251-268. doi:10.1038/s41562-022-01461-0, 2022 [pdf]
24. Comparison of individualized behavioral predictions across anatomical, diffusion and functional connectivity MRI. Ooi LQR, Chen J, Zhang S, Tam A, Li J, Dhamala E, Zhou JH, Holmes AJ, Yeo BTT. Neuroimage, 263, 119636. doi: 10.1016/j.neuroimage.2022.119636, 2022 [free download]
25. Goal-specific brain MRI harmonization. An L, Chen J, Chen P, He T, Chen C, Zhou JH, Yeo BTT. Neuroimage, 263, 119570. doi: 10.1016/j.neuroimage.2022.119570, 2022 [free download]
26. Cross-cohort replicability and generalizability of connectivity-based psychometric prediction patterns. Wu J, Li J, Eickhoff SB, Hoffstaedter F, Hanke M, Yeo BTT, Genon S. Neuroimage, 262, 119569. doi: 10.1016/j.neuroimage.2022.119569, 2022 [free download]
27. A parsimonious description of global functional brain organization in three spatiotemporal patterns. Bolt T, Nomi JS, Bzdok D, Chang C, Yeo BTT, Uddin LQ, Keilholz SD. Nature Neuroscience, 25, 1093-1103. doi: 10.1038/s41593-022-01118-1, 2022 [pdf]
28. Proportional intracranial volume correction differentially biases behavioral predictions across neuroanatomical features, sexes, and development. Dhamala E, Ooi LQR, Chen J, Kong R, Anderson KM, Chin R, Yeo BTT, Holmes AJ. Neuroimage, 260, 119485. doi:10.1016/j.neuroimage.2022.119485, 2022 [free download]
29. Meta-matching as a simple framework to translate phenotypic predictive models from big to small data. He T, An L, Feng J, Bzdok D, Holmes AJ, Eickhoff SB, Yeo BTT. Nature Neuroscience. 25, 795–804. doi: 10.1038/s41593-022-01059-9, 2022 [pdf]
30. Genetic and phylogenetic uncoupling of structure and function in human transmodal cortex. Valk SL, Xu T, Paquola C, Park B, Bethlehem RAI, Vos de Wael R, Royer J, Masouleh SK, Bayrak S, Kochunov P, Yeo BTT, Margulies D, Smallwood J, Eickhoff SB, Bernhardt BC. Nature Communications, 13, 2341. doi: 10.1038/s41467-022-29886-1, 2022 [free download]
31. Population heterogeneity in clinical cohorts affects the predictive accuracy of brain imaging. Benkarim O, Paquola C, Park B, Kebets V, Hong S, Vos de Wael R, Zhang S, Yeo BTT, Eickenberg M, Ge T, Poline J, Bernhardt BC, Bzdok D. PLoS Biology, 20(4), e300162. doi: 10.1371/journal.pbio.3001627, 2022 [free download]
32. Shared and unique brain network features predict cognitive, personality, and mental health scores in the ABCD study. Chen J*, Tam A*, Kebets V, Orban C, Ooi LQR, Marek S, Dosenbach N, Eickhoff SB, Bzdok D, Holmes AJ, Yeo BTT. Nature Communications, 13, 2217. doi:10.1038/s41467-022-29766-8, 2022 [free download]
33. Control Theory Illustrates the Energy Efficiency in the Dynamic Reconfiguration of Functional Connectivity. Deng S, Li J, Yeo BTT, Gu S. Communications Biology, 5, 295. doi:10.1038/s42003-022-03196-0, 2022 [free download]
34. Brain charts for the human lifespan. Bethlehem RAI*, Seidlitz J*, White SR* et al. Nature. doi:10.1038/s41586-022-04554-y, 2022 [free download]
35. Reproducible brain-wide association studies require thousands of individuals. Marek S*, Tervo-Clemmens B*, et al. Nature. doi:10.1038/s41586-022-04492-9, 2022 [pdf]
36. Cross-ethnicity/race generalization failure of behavioral prediction from resting-state functional connectivity. Li J, Bzdok D, Chen J, Tam A, Ooi LQR, Holmes AJ, Ge T, Patil KR, Jabbi M, Eickhoff SB, Yeo BTT*, Genon S*. Science Advances, 8(11), eabj1812. doi:10.1126/sciadv.abj1812, 2022 [free download]
37. Dynamic primitives of brain network interaction. Shirner M, Kong X, Yeo BTT, Deco G, Ritter P. Neuroimage, 250, 118928. doi:10.1016/j.neuroimage.2022.118928, 2022 [free download]
38. The Alzheimer's Disease Prediction Of Longitudinal Evolution (TADPOLE) Challenge: Results after 1 Year Follow-up. Marinescu RV et al. MELBA, 2021(019):1-60. [free download]
39. Sensory-Motor Cortices Shape Functional Connectivity Dynamics in the Human Brain. Kong X, Kong R, Orban C, Wang P, Zhang S, Anderson K, Holmes A, Murray JD, Deco G, van den Heuvel M, Yeo BTT. Nature Communications, 12, 6373. doi:10.1038/s41467-021-26704-y, 2021 [free download]
40. Behavioral, Anatomical and Heritable Convergence of Affect and Cognition in Superior Frontal Cortex. Kraljević N, Schaare HL, Eickhoff SB, Kochunov P, Yeo BTT, Masouleh SK, Valk SL. Neuroimage, 243, 118561. doi:10.1016/j.neuroimage.2021.118561, 2021 [free download]
41. Interpreting null models of resting-state functional MRI dynamics: not throwing the model out with the hypothesis. Liégeois R, Yeo BTT, Van De Ville D. Neuroimage, 243, 118518. doi:10.1016/j.neuroimage.2021.118518 , 2021 [free download]
42. Identification of community structure-based brain states and transitions using functional MRI. Bian L, Cui T, Yeo BTT, Fornito A, Razi A, Keith J. Neuroimage, 244, 118635. doi:10.1016/j.neuroimage.2021.118635, 2021 [free download]
43. Inter-subject and inter-parcellation variability of resting-state whole-brain dynamical modeling. Popovych OV, Jung K, Manos T, Diaz-Pier S, Hoffstaedter F, Schreiber J, Yeo BTT, Eickhoff SB. Neuroimage, 236, 118201. doi: 10.1016/j.neuroimage.2021.118201, 2021 [free download]
44. Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Gau et al., Neuron, 109(11): 1769-1775. doi: 10.1016/j.neuron.2021.04.001, 2021 [pdf]
45. Individual-Specific Areal-Level Parcellations Improve Functional Connectivity Prediction of Behavior. Kong R, Yang Q, Gordon E, Xue A, Yan X, Orban C, Zuo XN, Spreng N, Ge T, Holmes A, Eickhoff SB, Yeo BTT. Cerebral Cortex, 31, 4477–4500 doi: 10.1093/cercor/bhab101, 2021. [pdf]
46. A Connectivity-based Psychometric Prediction Framework for Brain-behavior Relationship Studies. Wu J, Eickhoff SB, Hoffstaedter F, Patil KR, Schwender H, Yeo BTT, Genon S. Cerebral Cortex, bhab101. 31 (8): 3732-3751. doi: 10.1093/cercor/bhab044, 2021 [pdf]
47. Differences in subcortico-cortical interactions identified from connectome and microcircuit models in autism. Park B, Hong SJ, Valk S, Paquola C, Benkarim O, Bethlehem RAI, Di Martino A, Milham MP, Gozzi A, Yeo BTT, Smallwood J, Bernhardt BC. Nature Communications. 12:2225. doi:10.1038/s41467-021-21732-0, 2021 [free download]
48. Heritability of individualized cortical network topography. Anderson KM, Ge T, Kong R, Patrick LM, Spreng RN, Sabuncu RM, Yeo BTT, Holmes AJ. Proceedings of the National Academy of Sciences USA. 118 (9): e2016271118 . doi: 10.1073/pnas.2016271118, 2021 [free download]
49. Deep learning identifies partially overlapping subnetworks in the human social brain. Kiesow H, Spreng RN, Holmes AJ, Chakravarty MM, Marquand AF, Yeo BTT, Bzdok D. Communications Biology. 4(1):65, doi: 10.1038/s42003-020-01559-z, 2021 [free download]
50. The detailed organization of the human cerebellum estimated by intrinsic functional connectivity within the individual. Xue A, Kong R, Yang Q, Eldaief MC, Angeli P, DiNicola LM, Braga RM, Buckner RL, Yeo BTT. Journal of Neurophysiology. 125(2):358-384. doi: 10.1152/jn.00561.2020, 2021. [free download]
51. High-resolution connectomic fingerprints: Mapping neural identity and behavior. Mansour L S, Tian Y, Yeo BTT, Cropley V, Zalesky A. Neuroimage. 229:117695. doi: 10.1016/j.neuroimage.2020.117695, 2021. [free download]
52. Structure-function coupling in the human connectome: A machine learning approach. Sarwar T, Tian Y, Yeo BTT, Ramamohanarao K, Zalesky A. Neuroimage. 226:117609. doi: 10.1016/j.neuroimage.2020.117609, 2021. [free download]
53. COVID-19 Related Mobility Reduction: Heterogenous Effects on Sleep and Physical Activity Rhythms. Ong JL, Lau TY, Massar SAA, Chong ZT, Ng BKL, Koek D, Zhao W, Yeo BTT, K. Cheong K, Chee MWL. Sleep. 44 (2): zsaa179. doi: 10.1093/sleep/zsaa179, 2021. [free download]
54. The default network of the human brain is associated with perceived social isolation. Spreng RN, Dimas E, Mwilambe-Tshilobo L, Dagher A, Koellinger P, Nave G, Ong A, Kernbach JM, Wiecki TV, Tian G, Li Y, Holmes AJ, Yeo BTT, Turner GR, Dunbar RIM, Bzdok D. Nature Communications. 11: 6393. doi: 10.1038/s41467-021-23623-w, 2020. [free download]
55. Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder. Anderson KM, Collins MA, Kong R, Fang K, Li J, He T, Chekroud AM, Yeo BTT, Holmes AJ. Proceedings of the National Academy of Sciences USA. 117 (40): 25138 - 25149. doi: 10.1073/pnas.2008004117, 2020. [free download]
56. Shaping Brain Structure: Genetic and Phylogenetic Axes of Macro Scale Organization of Cortical Thickness. Valk SL, Xu T, Margulies DS, Masouleh SK, Paquola C, Goulas A, Kochunov P, Smallwood J, Yeo BTT, Bernhardt BC, Eickhoff SB. Science Advances, 6 (39): eabb3417. doi: 10.1126/sciadv.abb3417, 2020. [free download]
57. Charting brain growth in tandem with brain templates for school children. Dong H, Castenallos FX, Yang N, Zhang Z, Zhou Q, He Y, Zhang L, Xu T, Holmes AJ, Yeo BTT, Chen F, Wang B, Beckmann C, White T, Sporns O, Qiu J, Feng T, Chen A, Zuo XN. Science Bulletin, 65 (22): 1924 - 1934. doi: 10.1016/j.scib.2020.07.027, 2020. [free download]
58. Latent atrophy factors related to phenotypical variants of posterior cortical atrophy. Groot C, Yeo BTT, Vogel JW, Zhang X, Sun N, Mormino EC, Pijnenburg YA, Miller BL, Rosen HJ, La Joie R, Barkhof F, Scheltens P, van der Flier WM, Rabinovici GD, Ossenkoppele R. Neurology, 95 (12): 1672-1685. doi: 10.1212/WNL.0000000000010362, 2020 [pdf]
59. Precision Neuroimaging Opens a New Chapter of Neuroplasticity Experimentation. Fair DA, Yeo BTT. Neuron, 107(3): 401-403. doi: 10.1016/j.neuron.2020.07.017, 2020. [pdf]
60. Different scaling of linear models and deep learning in UKBiobank brain images versus machine-learning datasets. Schulz M, Yeo BTT, Vogelstein J, Mourao-Miranda J, Kather J, Kording K, Richards BA, Bzdok B. Nature Communications, 11, 4238. doi: 10.1038/s41467-020-18037-z, 2020 [free download]
61. Predicting Alzheimer's disease progression using deep recurrent neural networks. Nguyen M, He T, An L, Alexander DC, Feng J, Yeo BTT. Neuroimage, 222, 117203, doi: 10.1016/j.neuroimage.2020.117203 , 2020. [free download] [code]
62. Toward Neurosubtypes in Autism. Hong SJ, Vogelstein J , Bernhardt BC, Yeo BTT, Milham Michael, Di Martino A. Biological Psychiatry, 88:1071-1082. doi: 10.1016/j.biopsych.2020.03.022 , 2020 [pdf]
63. Personality and local brain structure: Their shared genetic basis and reproducibility. Valk SL, Hoffstaedter F, Camilleri J, Kochunov P, Yeo BTT, Eickhoff SB. Neuroimage, 220, 117067, doi: 10.1016/j.neuroimage.2020.117067, 2020. [free download]
64. Multi-Subject Stochastic Blockmodels for Adaptive Analysis of Individual Differences in Human Brain Network Cluster Structure. Pavlović DM, Guillaume BRL, Towlson EK, Kuek NMY, Afyouni S, Vértes PE, Yeo BTT, Bullmore ET, Nichols TE. NeuroImage, 220, 116611, doi: 10.1016/j.neuroimage.2020.116611, 2020 [free download]
65. Macroscale and microcircuit dissociation of focal and generalized human epilepsies. Weng Y, Larivière S, Caciagli L, Vos de Wael R, Rodríguez-Cruces R, Royer J, Xu Q , Bernasconi N, Bernasconi A, Yeo BTT, Lu G , Zhang Z, Bernhardt BC. Communications Biology, 3, 244. doi: 10.1038/s42003-020-0958-5, 2020 [free download]
66. Reconciling dimensional and categorical models of autism heterogeneity: a brain connectomics & behavioral study. Tang S*, Sun N*, Floris DL, Zhang X, Di Martino A, Yeo BTT. Biological Psychiatry, 87:1071-1082. doi: 10.1016/j.biopsych.2019.11.009, 2020 [free download]
67. Maximizing dissimilarity in resting state detects heterogeneous subtypes in healthy population associated with high substance use and problems in antisocial personality. Kashyap R, Bhattacharjee S, Yeo BTT, Chen SA. Human Brain Mapping, 41: 1261-1273. doi: 10.1002/hbm.24873, 2020 [free download]
68. Sex classification by resting state brain connectivity. Weis S, Patil K, Hoffstaedter F, Nostro A, Yeo BTT, Eickhoff SB. Cerebral Cortex, 29: 824-835. doi: 10.1093/cercor/bhz129, 2020 [free download]
69. The interrelation of sleep and mental and physical health is anchored in grey-matter neuroanatomy and under genetic control. Tahmasian M, Samea F, Khazaie H, Zarei M, Kharabian S, Hoffstaedter F, Camilleri JA, Kochunov P, Yeo BTT, Eickhoff SB, Valk SL. Communications Biology, 3, 171. doi: 10.1038/s42003-020-0892-6, 2020 [free download]
70. Overlapping attentional networks yield divergent behavioral predictions across tasks: Neuromarkers for diffuse and focused attention? Wu EXW, Liaw GJ, Goh RZ, Chia TTY, Chee AMJ, Obana T, Rosenberg M, Yeo BTT, Asplund CL. NeuroImage, 209, 116535. doi: 10.1016/j.neuroimage.2020.116535, 2020 [free download]
71. Time of day is associated with paradoxical reductions in global signal fluctuation and functional connectivity. Orban C, Kong R, Li J, Chee MWL, Yeo BTT. PLoS Biology, 18(2): e3000602. doi: 10.1371/journal.pbio.3000602 , 2020 [free download] [science daily] [the week]
72. Agito ergo sum: correlates of spatio-temporal motion characteristics during fMRI. Bolton TAW, Kebets V, Glerean E, Zöller D, Li J, Yeo BTT, Caballero-Gaudes C, Van De Ville D. NeuroImage, 209, 116433. doi: 10.1016/j.neuroimage.2019.116433, 2020. [free download]
73. Deep neural networks and kernel regression achieve comparable accuracies for functional connectivity prediction of behavior and demographics. He T, Kong R, Holmes AJ, Nguyen M, Sabuncu MR, Eickhoff SB, Bzdok D, Feng J, Yeo BTT. NeuroImage, 206, 116276. doi: 10.1016/j.neuroimage.2019.116276, 2020 [free download] [code]
74. Multi-modal latent factor exploration of atrophy, cognitive and tau heterogeneity in Typical Late-Onset Alzheimer's Disease. Sun N, Mormino EC, Chen J, Sabuncu MR, Yeo BTT. NeuroImage, 201, 116043. doi: 10.1016/j.neuroimage.2019.116043, 2019 [pdf] [code]
75. Intrinsic Functional Connectivity of the Brain in Adults with a Single Cerebral Hemisphere. Kliemann D, Adolphs R, Tyszka JM, Fischl B, Yeo BTT, Nair R, Dubois J, Paul LK. Cell Reports, 29:2398-2407, 2019, doi:10.1016/j.celrep.2019.10.067 [free download]
76. Towards a Universal Taxonomy of Macro‑scale Functional Human Brain Networks. Uddin LQ, Yeo BTT, Spreng RN. Brain Topography, 32:926-942, 2019, doi:10.1007/s10548-019-00744-6 [pdf]
77. Somatosensory-motor dysconnectivity spans multiple transdiagnostic dimensions of psychopathology. Kebets V, Holmes AJ, Orban C, Tang S, Li J, Sun N, Kong R, Poldrack R, Yeo BTT. Biological Psychiatry, 86:779-791, 2019 [pdf] [code]
78. Topography and behavioral relevance of the global signal in the human brain. Li J*, Bolt T*, Bzdok B, Nomi JS, Yeo BTT, Spreng RN, Uddin LQ. Scientific Reports, 9:14286, doi:10.1038/s41598-019-50750-8, 2019 [free download]
79. Beyond consensus: embracing heterogeneity in curated neuroimaging meta-analysis. Ngo GN, Eickhoff SB, Nguyen M, Sevinc G, Fox PT, Spreng RN, Yeo BTT. NeuroImage, 200:142-158, 2019 [pdf] [code]
80. Resting brain dynamics at different timescales capture distinct aspects of human behavior. Liégeois R, Li J, R Kong, Orban C, Van De Ville D, Ge T, Sabuncu MR, Yeo BTT. Nature Communications, 10:2317, 2019 [free download]
81. Harnessing CURATE.AI as a digital therapeutics platform by identifying N-of-1 learning trajectory profiles. Kee T, Chee W, Blasiak A, Wang P, Chong JK, Chen J, Yeo BTT, Ho D, Asplund CL. Advanced Therapeutics, 2: 1900023, doi:10.1002/adtp.201900023, 2019 [free download]
82. Spatial topography of individual-specific cortical networks predicts human cognition, personality and emotion. Kong R, Li J, Orban C, Sabuncu MR, Liu H, Schaefer A, Sun N, Zuo XN, Holmes A, Eickhoff SB, Yeo BTT. Cerebral Cortex, 29:2533-2551, 2019 [pdf] [code]
83. Global signal regression strengthens association between resting-state functional connectivity and behavior. Li J*, Kong R*, Liegeois R, Orban C, Tan Y, Sun N, Holmes AJ, Sabuncu MR, Ge T, Yeo BTT. NeuroImage, 196:126-141, 2019 [pdf] [code]
84. Dynamic mode decomposition of resting-state and task fMRI. Carsorso J, Kong X, Wang C, Van De Ville D, Yeo BTT, Liegeois R. NeuroImage, 194:42-54, 2019 [pdf]
85. Individual-specific fMRI-subspaces improve functional connectivity prediction of behavior. Kashyap R, Kong R, Bhattacharjee S, Li J, Zhou J, Yeo BTT. NeuroImage, 189:804-812, 2019 [pdf]
86. Inversion of a large-scale circuit model reveals a cortical hierarchy in the dynamic resting human brain. Wang P, Kong R, Kong X, Liegeois R, Orban C, Deco G, van den Heuvel M, Yeo BTT. Science Advances, 5:eaat7854, 2019 [free download] [code]
87. Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants. Kernbach JM, Yeo BTT, Smallwood J, Margulies DS, Thiebaut de Schotten M. Walter H, Sabuncu MR, Holmes AJ, Gramfort A, Varoquaux G, Thirion B, Bzdok D. Proceedings of the National Academy of Sciences USA, 115:12295-12300, 2018 [pdf]
88. Imaging-based parcellations of the human brain. Eickhoff SB, Yeo BTT, Genon S. Nature Reviews Neuroscience, 19:672-686, 2018 [pdf]
89. A mechanistic model of connector hubs, modularity and cognition. Bertolero MA, Yeo BTT, Bassett DS, D'Esposito M. Nature Human Behavior, 2:765-777, 2018 http://doi.org/10.1038/s41562-018-0420-6 [pdf]
90. Local-Global parcellation of the human cerebral cortex from intrinsic functional connectivity MRI. Schaefer AL, Kong Ru, Gordon EM, Laumann TO, Zuo XN, Holmes AL, Eickhoff SB, Yeo BTT. Cerebral Cortex, 29:3095-3114, 2018 [pdf] [code]
91. Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems. Wu J, Ngo GH, Greve DN, Li J, He T, Fischl B, Eickhoff SB, Yeo BTT. Human Brain Mapping, 39:3793–3808, 2018 [pdf] [code]
92. Gene expression links functional networks across cortex and striatum. Anderson KM, Krienen FM, Choi EY, Reinen JM, Yeo BTT, Holmes AJ. Nature Communications 9:1428, 2018 [free download]
93. Topographic organization of the cerebral cortex and brain cartography. Eickhoff SB, Constable RT, Yeo BTT. NeuroImage, 170:332–347, 2018 [pdf]
94. The human cortex possesses a reconfigurable dynamic network architecture that is disrupted in psychosis. Reinen JM, Chen O, Hutchison OY, Yeo BTT, Anderson KM, Sabuncu MR, Öngür D, Roffman JL, Smoller JW, Baker JT, Holmes AJ. Nature Communications 9:1157, 2018 [free download]
95. Interpreting temporal fluctuations in resting-state functional connectivity MRI. Liegeois R, Laumann TO, Snyder AZ, Zhou HJ, Yeo BTT. Neuroimage 163:437–455, 2017 [pdf] [code]
96. The diverse club. Bertolero MA, Yeo BTT, D'Esposito M. Nature Communications 8:1277, 2017 [free download]
97. Data-driven extraction of a nested model of human brain function. Bolt T, Nomi JS, Yeo BTT, Uddin LQ. Journal of Neuroscience, 37:7263–7277, 2017 [pdf]
98. Inference in the age of big data: future perspectives on neuroscience. Bzdok D, Yeo BTT. NeuroImage, 155:549-564, 2017 [pdf]
99. Proportional thresholding in resting-state fMRI functional connectivity networks and consequences for patient-control connectome studies: issues and recommendations. van den Heuvel M, de Lange S, Zalesky A, Seguin C, Yeo BTT, R Schmidt. NeuroImage, 152:437-449, 2017 [pdf]
100. A spotlight on bridging microscale and macroscale human brain architecture. van den Heuvel M, Yeo BTT. Neuron, 93:1248-1251, 2017 [pdf]
101. Best practices in data analysis and sharing in neuroimaging using MRI. Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BTT. Nature Neuroscience, 20:299-303, 2017 [pdf]
102. Bayesian model reveals latent atrophy factors with dissociable cognitive trajectories in Alzheimer’s disease. Zhang XM, Mormino EC, Sun N, Sperling RA, Sabuncu MR, Yeo BTT. Proceedings of the National Academy of Sciences USA, 113:E6535–E6544, 2016 [free download] [NUS press release] [MGH press release] [science daily] [upi] [code]
103. A modern map of the human cerebral cortex. Yeo BTT, Eickhoff SB. Nature, 536:152-154, 2016 [pdf] [scientific american, huffington post, vice, popular science, geekwire]
104. Cerebral functional connectivity periodically (de)synchronizes with anatomical constraints. Liegeois R, Ziegler E, Phillips C, Geurts P, Gomez F, Bahri MA, Yeo BTT, Soddu A, Vanhaudenhuyse A, Laureys S, Sepulchre R. Brain Struct Func, 221:2985-2997, 2016 [pdf]
105. Transcriptional profiles of supragranular-enriched genes associate with corticocortical network architecture in the human brain. Krienen FM, Yeo BTT, Ge T, Buckner RL, Sherwood C. Proceedings of the National Academy of Sciences USA, 113:E469-E478, 2016 [pdf] [supp] [popular press]
106. The modular and integrative functional architecture of the human brain. Bertolero MA, Yeo BTT, D'Esposito M. Proceedings of the National Academy of Sciences USA, 112:E6798-E6807, 2015 [pdf] [Berkeley press release]
107. From phenotypic chaos to neurobiological order. Holmes AJ, Yeo BTT. Nature Neuroscience, 18:1532-1534, 2015 [pdf]
108. Functional specialization and flexibility in human association cortex. Yeo BTT, Krienen FM, Eickhoff SB, Yaakub SN, Fox PT, Buckner RL, Asplund CL, Chee MWL. Cerebral Cortex, 25:3654-3672, 2015 [pdf] [supplemental] [maps in MNI and surface space] [interactive ontology] [neurovault] [code]
109. Co-activated yet disconnected - neural correlates of eye closures when trying to stay awake. Ong JL, Kong D, Chia TTY, Tandi J, Yeo BTT, Chee MWL. Neuroimage 118:553-562, 2015 [pdf]
110. Functional connectivity during rested wakefulness predicts vulnerability to sleep deprivation. Yeo BTT, Tandi J, Chee MWL. Neuroimage 111:147-158, 2015 [pdf]
111. Reconfigurable task-dependent functional coupling modes cluster around a core functional architecture. Krienen FM, Yeo BTT, Buckner RL. Philosophical Transactions of the Royal Society B, 369:20130526, 2014 [pdf]
112. Borders, map clusters, and supra-areal organization of the visual cortex. Buckner RL, Yeo BTT. Neuroimage, 93:293-297, 2014 [pdf]
113. Estimates of segregation and overlap of functional connectivity networks in the human cerebral cortex. Yeo BTT, Krienen FM, Chee MWL, Buckner RL. Neuroimage, 88:212-227, 2014 [pdf]
114. Disruption of cortical association networks in schizophrenia and psychotic bipolar disorder. Baker JT, Holmes AJ, Masters GA, Yeo BTT, Krienen FM, Buckner RL, Öngür D. JAMA Psychiatry, 71:109-118, 2014 [pdf]
115. Opportunities and limitations of functional connectivity MRI. Buckner RL, Krienen FM, Yeo BTT. Nature Neuroscience, 16:832-837, 2013 [pdf]
116. Individual variability in functional connectivity architecture of the human brain. Mueller S, Wang D, Fox MD, Yeo BTT, Sepulcre J, Sabuncu M, Shafee R, Lu J, Liu H. Neuron, 3(77):586-595, 2013 [pdf] [Recommended by Faculty of 1000]
117. On removing interpolation and resampling artifacts in rigid image registration. Aganj I, Yeo BTT, Sabuncu MR, Fischl B. IEEE Transactions on Image Processing, 22(2):816-827, 2013 [pdf]
118. The organization of the human striatum revealed by intrinsic functional connectivity. Choi EY, Yeo BTT, Buckner RL. J Neurophysiology, 108(8):2242-2263, 2012 [pdf] [COVER]
119. Stepwise connectivity of the modal cortex reveals the multimodal organization of the human brain. Sepulcre J, Sabuncu MR, Yeo TB, Liu H, Johnson KA. J Neuroscience, 32(31):10649–10661, 2012 [pdf]
120. Measuring and comparing brain cortical surface area and other areal quantities. Anderson MW, Sabuncu MR, Yeo BTT, Fischl B, Greve DN, Kochunov P, Nichols TE, Blangero J, Glahn DC. Neuroimage, 61(4):1428–1443, 2012 [pdf]
121. The organization of the human cerebellum revealed by intrinsic functional connectivity. Buckner RL, Krienen FM, Castellanos A, Diaz JC, Yeo BTT. J Neurophysiology, 106(5):2322-2345, 2011 [pdf] [movies] [parcellations in MNI Space]
122. The organization of the human cerebral cortex revealed by intrinsic functional connectivity. Yeo BTT*, Krienen FM*, Sepulcre J, Sabuncu MR, Lashkari L, Hollinshead M, Roffman JL, Smoller JW, Zöllei L, Polimeni JM, Fischl B, Liu H, Buckner RL. J Neurophysiology, 106(3):1125–1165, 2011 [pdf] [movies] [parcellations in MNI and FreeSurfer Space] [parcellations in Caret Space] [Recommended by Faculty of 1000] [code]
123. The dynamics of cortical and hippocampal atrophy in Alzheimer’s disease. Sabuncu MR, Desikan RS, Sepulcre J, Yeo BTT, Liu H, Schmansky N, Reuter M, Weiner MW, Buckner RL, Sperling RA, Fischl B. Archives of Neurology, 68(8):1040–1048, 2011 [pdf]
124. A generative model for image segmentation based on label fusion. Sabuncu MR*, Yeo BTT*, Van Leemput K, Fischl B, Golland P. IEEE Transactions on Medical Imaging, 29(10):1714--1729, 2010 [pdf] [code]
125. Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex. Yeo BTT, Sabuncu MR, Vercauteren T, Holt D, Amunts K, Zilles K, Golland P, Fischl B.IEEE Transactions on Medical Imaging, 29(7):1424--1441, 2010 [pdf]
126. The organization of local and distant functional connectivity in the human brain. Sepulcre J, Liu H, Talukdar T, Martinocorena I, Yeo BTT, Buckner RL. PLoS Computational Biology, 6(6): e1000808. doi:10.1371, 2010 [pdf]
127. Spherical demons: fast diffeomorphic landmark-free surface registration. Yeo BTT*, Sabuncu MR*, Vercauteren T, Ayache N, Fischl B, Golland P. IEEE Transactions on Medical Imaging, 29(3):650--668, 2010 [pdf] [code] [39 cortical surfaces with accompanying anatomical parcellations]
128. Evaluation of volume-based and surface-based brain image registration methods. Klein A, Ghosh S, Avants B, Yeo BTT, Fischl B, Ardekani B, Gee J, Mann JJ, Parsey RV. NeuroImage, 51:214–220, 2010 [pdf]
129. DT-REFinD: diffusion tensor registration with exact finite-strain differential. Yeo BTT, Vercauteren T, Fillard P, Peyrat J-M, Pennec X, Golland P, Ayache N, Clatz O. IEEE Transactions on Medical Imaging, 28(12):1914--1928, 2009 [pdf, code]
130. Predicting the location of entorhinal cortex from MRI. Fischl B, Stevens A, Rajendran N, Yeo BTT, Greve D, Van Leemput K, Polimeni J, Kakunoori S, Buckner RL, Pacheco J, Salat D, Melcher J, Frosch M, Hyman B, Grant PE, Rosen BR, van der Kouwe A, Wiggins G, Wald L, Augustinack J. NeuroImage, 47(1):8--17, 2009 [pdf]
131. Effects of registration regularization and atlas sharpness on segmentation accuracy. Yeo BTT*, Sabuncu MR*, Desikan R, Fischl B, Golland P. Medical Image Analysis, 12(5):603--615, 2008 [pdf]
132. On the construction of invertible filter banks on the 2-sphere. Yeo BTT, Ou W, Golland P. IEEE Transactions on Image Processing, 17(3):283--300, 2008 [pdf] [code]
133. Cortical folding patterns and predicting cytoarchitecture. Fischl B, Rajendran N, Busa E, Augustinack J, Hinds O, Yeo BTT, Mohlberg H, Amunts K, Zilles K. Cerebral Cortex, 18(8):1973--1980, 2008 [pdf]

Peer-reviewed Full-Length Conferences

1. Is deep learning better than kernel regression for functional connectivity prediction of fluid intelligence? He T, Kong R, Holmes AJ, Sabuncu MR, Eickhoff SB, Bzdok D, Feng J, Yeo BTT. International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2018. [pdf] Runner-Up, PRNI Best Paper Award
2. Modeling Alzheimer’s disease progression using deep recurrent neural networks. Nguyen M, Alexander DC, Feng J, Yeo BTT. International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2018. [pdf]
3. Collapsed variational Bayesian inference of the author-topic model: application to large-scale coordinate-based meta-analysis. Ngo HG, Eickhoff SB, Fox P, Yeo BTT. International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2016. [pdf]
4. An automated pipeline for cortical surface generation and registration of the cerebral cortex. Li W, Ibanez L, Gelas A, Yeo BTT, Niethammer M, Andreasen NC, Magnotta VA. SPIE Medical Imaging, 2011. [pdf]
5. Task-optimal registration cost functions. Yeo BTT, Sabuncu M, Golland P, Fischl B. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5761 of LNCS, 598--606, 2009. [pdf] Hamlyn Centre for Medical Robotics Travel Grant, Imperial College
6. Supervised non-parametric image parcellation. Sabuncu MR, Yeo BTT, Van Leemput K, Fischl B, Golland P. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5762 of LNCS, 1075-1083, 2009. [pdf]
7. Asymmetric image-template registration. Sabuncu MR, Yeo BTT, Van Leemput K, Golland P.Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5761 of LNCS, 565--573, 2009. [pdf]
8. Nonparametric mixture models for supervised image parcellation. Sabuncu MR, Yeo BTT, Van Leemput K, Fischl B, Golland P. Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI) workshop on Probabilistic Models for Medical Image Analysis (PMMIA), pages 301-313, 2009. [pdf]
9. Spherical demons: fast surface registration. Yeo BTT, Sabuncu M, Vercauteren T, Ayache N, Fischl B, Golland P. Proceedings of the International Conference Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5241 of LNCS, 745--753, 2008 [pdf, code] Runner-Up, MICCAI Young Scientist Award
10. Shape analysis with overcomplete spherical wavelets. Yeo BTT, Yu P, Grant PE, Fischl B, Golland P. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5241 of LNCS, 468--476, 2008 [pdf, code]
11. DTI registration with exact finite-strain differential. Yeo BTT, Vercauteren T, Fillard P, Pennec X, Golland P, Ayache N, Clatz O. Proceedings of the International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), 700--703, 2008. [pdf, code] NIH ISBI Travel Grant
12. Effects of registration regularization and atlas sharpness on segmentation accuracy. Yeo BTT, Sabuncu MR, Desikan R, Fischl B, Golland P. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, 683--691, 2007. [pdf] MICCAI Young Scientist Award, MICCAI Young Investigator Publication Impact Award
13. What data to co-register for computing atlases. Yeo BTT, Sabuncu MR, Mohlberg H, Amunts K, Zilles K, Golland P, Fischl B. Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA), International Conference on Computer Vision, 2007. [pdf]
14. Cortical folding development study based on over-complete spherical wavelets. Yu P, Yeo BTT, Grant PE, Fischl B, Golland P. Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA), International Conference on Computer Vision, 2007. [pdf, code]
15. Invertible filter banks on the 2-sphere. Yeo BTT, Ou W, Golland P. Proceedings of the International Conference on Image Processing (ICIP), 2161--2164, 2006 [pdf, code]

Theses, Book Chapters & Unpublished Reports

1. Best practices in data analysis and sharing in neuroimaging using MRI. Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BTT. [free download]
2. Functional connectivity parcellation of the human brain. Schaefer AL, Kong R, Yeo BTT. In: Guorong Wu, Dinggang Shen, Sabuncu MR, editors. Machine Learning and Medical Imaging. Academic Press: Elsevier, pp. 3-29, 2016 [pdf] [amazon]
3. Automatic labeling of the human cerebral cortex. Yeo BTT. In: Arthur W. Toga, editor. Brain Mapping: An Encyclopedic Reference. Academic Press: Elsevier, vol 1, pp. 357-363, 2015 [pdf] [amazon]
4. Learning task-optimal image registration with applications in localizing structure and function in the cerebral cortex. Yeo BTT. Ph.D. Thesis, Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, February 2010. [high res 33MB pdf, low res 7MB pdf]