VRO mod WILL OVERWRITE any other changes to ships, weapons or shield parameters from any mod if loaded after them (in alphabetic order).
Mods that add new ships or weapons need to have a patch mod or they will can lack weapons, internal generators etc.
To create a patch for a ship you need to do:
Update ship macro to match VRO speed/physics values, hull level, missile, drone, deployable and crew capacities.
Add macro modifiers to heat/shield values to match bonuses of other ships.
Update weapon / turret compatibility tags to match VRO new gun classes.