Waizumi R, Ichinose S, Inoue M, Ishimori M, Shibata M and Higuchi Y* (2025) Integration of signals inducing reproductive phase transition occurs at the nodal enlarged vascular bunddles in sacred lotus, Nelumbo nucifera. Plant and Cell Physiology. https://doi.org/10.1093/pcp/pcaf088, *Corresponding author
Sumi C, Sugiura S, Ishimori M, Tabayashi Y, Higuchi Y* and Shibata M (2025) Flower color variations are determined by betalain biosynthetic genes in Portulaca umbraticola. Plant and Cell Physiology. https://doi.org/10.1093/pcp/pcaf057, *Corresponding author
Qin D, Toyokura K, Nakano M, Abe T, Higuchi Y, Arens P, Taniguchi K, Shibata M, Kusaba M. (2025) Structural complexity of the white flower locus in Chrysanthemum. The Journal of Horticultural Science and Biotechnology. https://doi.org/10.1080/14620316.2024.2371596
Hirakawa H, Hasegawa M, Yokotani N, and Isobe S. (2024) Genome information and its industrial applications for plants. Acta Hortic. 1404, 5-18.
https://doi.org/10.17660/ActaHortic.2024.1404.2
Yencho G, C Olukolu, B. A., and Isobe S. (eds.) (2025) The Sweetpotato genome. Springer International Publishing, Cham.
Hara K, Kikuchi S, Inoue M, et al. (2024) B chromosome and its non-Mendelian inheritance in Atractylodes lancea. PLoS One, 19, e0308881.
Shirasawa K, Esumi T, Itai A., et al. (2024) Propagation path of a flowering cherry (Cerasus × yedoensis) cultivar “Somei-Yoshino” traced by somatic mutations. DNA Res. 31. dsae025
Nagasaki H, Shirasawa K, Hoshikawa K, Isobe S, Ezura H, Aoki K, Hirakawa H. (2024) Genomic variation across distribution of Micro-Tom, a model cultivar of tomato (Solanum lycopersicum). DNA Res. dsae016. https://doi.org/10.1093/dnares/dsae016
F Fauziatul, Matsuo H, Isobe S, Shirasawa K, Naito K, Yoshioka Y. (2024) Different control of resistance to two Colletotrichum orbiculare pathogenic races 0 and 1 in cucumber (Cucumis sativus L.). Theoretical and Applied Genetics. 137, 6:127
Shirasawa K, Mishima K, Hirakawa H, Hirao T, Tsubomura M, Nagano S, Iki T, Isobe S, Takahashi M. (2024) Haplotype-resolved de novo genome assemblies of four coniferous tree species. Journal of Forest Research. 29, 2:151-157
Sumitomo K, Nakano Y, Hisamatsu T, Oda A, Narumi-Kawasaki T, Fukai S, Higuchi Y. (2023) Delayed flowering due to ‘cold memory’ is regulated by suppression of FLOWERING LOCUS T-like 3 gene in chrysanthemums. The Journal of Horticultural Science and Biotechnology.1-8
Nagai M, Higuchi Y, Ishikawa Y, Guo W, Fukatsu T, Baba YG, Takada MB (2022) Periodically taken photographs reveal the effect of pollinator insects on seed set in lotus flowers. Scientific reports 12: 1-12.
Nakano M, Hirakawa H, Fukai E, Toyoda A, Kajitani R, Minakuchi Y, Itoh T, Higuchi Y, Kozuka T, Bono H, Shirasawa K, Shiraiwa I, Sumitomo K, Hisamatsu T, Shibata M, Isobe S, Taniguchi K, Kusaba M. (2021) A chromosome-level genome sequence of the model chrysanthemum strain reveals recent genome expansion. Communications Biology 4: 1167.
Kajiya-Kanegae, H., Nagasaki, H., Kaga, A., Hirano, K., Ogiso-Tanaka, E., Matsuoka, M., Ishimori, M., Ishimoto, M., Hashiguchi, M., Tanaka, H., Akashi, R., Isobe, S. and Iwata, H. (2021) Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections. DNA. Res. 28: dsaa032, https://doi.org/10.1093/dnares/dsaa032.
Ishimori, M., Takanashi, H., Hamazaki, K., Atagi, Y., Kajiya-Kanegae, H., Fujimoto, M., Yoneda, J., Tokunaga, T., Tsutsumi, N. and Iwata, H.（2020）Dissecting the genetic architecture of biofuel-related traits in a sorghum breeding population. G3 (Bethesda) 10: 4565-4577.
Ishimori, M., Hattori, T., Yamazaki, K., Takanashi, H., Fujimoto, M., Kajiya-Kanegae, H., Yoneda, J., Tokunaga, T., Fujiwara, T., Tsutsumi, N. and Iwata, H.（2020）Impacts of dominance effects on genomic prediction of sorghum hybrid performance. Breed. Sci. 70: 605-616.
Yamazaki, K., Ishimori, M., Kajiya-Kanegae, H., Takanashi, H., Fujimoto, M., Yoneda, J., Yano, K., Koshiba, T., Tanaka, R., Iwata, H., Tokunaga, T., Tsutsumi, N. and Fujiwara, T.（2020）Effect of salt tolerance on biomass production in a large population of sorghum accessions. Breed. Sci. 70: 167-175.
Kajiya-Kanegae, H., Takanashi, H., Fujimoto, M., Ishimori, M., Ohnishi, N., Wacera, F. W., Omollo, E. A., Kobayashi, M., Yano, K., Nakano, M., Kozuka, T., Kusaba, M., Iwata, H., Tsutsumi, N. and Sakamoto, W.（2020）RAD-seq-based high-density linkage map construction and QTL mapping of biomass-related traits in sorghum using the Japanese landrace Takakibi NOG. Plant Cell Physiol. 61: 1262-1272.
Maguvu TE, Higuchi Y*, Sugiura S, Ito H, Shibata M (2020) De novo whole transcriptome analysis of wingpod purslane, Portulaca umbraticola, and its application to the discovery of genes related to flower senescence and opening rhythm. The Horticulture Journal, https://doi.org/10.2503/hortj.UTD-215. *Corresponding
Kashiwamura Y, Matsuzawa R, Ishikawa Y, Shibata M, Higuchi Y* (2020) Reduced expression of C-Class genes is associated with the multiple-petal phenotype in Nelumbo nucifera. The Horticulture Journal, https://doi.org/10.2503/hortj.UTD-214. *Corresponding
Oda A, Higuchi Y, Hisamatsu T (2020) Constitutive expression of CsGI alters critical night length for flowering by changing the photo-sensitive phase of anti-florigen production in chrysanthemum. Plant Science 293:110417.
樋口洋平, 中野善公, 久松完 (2019) キクの光周性花成制御機構の解明と計画生産技術への応用. BSJ-review 10:158-168.
Ishikawa M, Morishita M, Higuchi Y, Ichikawa S, Ishikawa T, Nishiyama T, Kabeya Y, Hiwatashi Y, Kurata T, Kubo M, Shigenobu S, Tamada Y, Sato Y, Hasebe M (2019) Physcomitrella STEMIN transcription factor induces stem cell formation with epigenetic reprogramming. Nature Plants 5: 681-690.
Hirakawa H, Sumitomo K, Hisamatsu T, Nagano S, Shirasawa K, Higuchi Y, Kusaba M, Koshioka M, Nakano Y, Yagi M, Yamaguchi H, Taniguchi K, Nakano M, Isobe S (2019) De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis. DNA research 26:195-203.
Nakano Y, Takase T, Takahashi S, Sumitomo K, Higuchi Y, Hisamatsu T (2019) Chrysanthemum requires short-day repeats for anthesis: Gradual CsFTL3 induction through a feedback loop under short-day conditions. Plant Science 283:247-255.
Takahashi, K. H., Ishimori, M. and Iwata, H.（2018）HSP90 as a global genetic modifier for male genital morphology in Drosophila melanogaster. Evolution 72: 2419-2434.
Fujimoto, M., Sazuka, T., Oda, Y., Kawahigashi, H., Wu, J., Takanashi, T., Ohnishi, T., Yoneda, J., Ishimori, M., Kajiya-Kanegae, H., Hibara, K., Ishizuna, F., Ebine, K., Ueda, T., Tokunaga, T., Iwata, H., Matsumoto, T., Kasuga, S., Yonemaru, J. and Tsutsumi, N.（2018）Transcriptional switch for programmed cell death in pith parenchyma of sorghum stems. Proc. Natl. Acad. Sci. USA 115: E8783-E9792.
Maguvu T.E, Higuchi Y, Shibata M. 2018. Effect of different photoperiods on flower opening time in portulaca umbraticola. The Horticulture Journal 87:124-131
Onozaki T., Yamada M., Yagi M., Tanase K., Shibata M. 2018. Effects of crossing and selection for seven generations based on flower vase life in carnations dianthus caryophyllus L.),and the relationship between ethylene production and flower vase life in the breeding lines.The Horticulture Journal 87:106-114
Higuchi Y. 2018. Florigen and anti-florigen: Flowering regulation in horticultural crops. Breeding Science 68: 109-118.
樋口洋平, 柴田道夫 2018. キクの育種上の諸特性と開花制御. 化学と生物 56:111-117
Oda A, Higuchi Y, Hisamatsu T. 2017. Photoperiod-insensitive floral transition in chrysanthemum induced by constitutive expression of chmeric repressor CsLHY-SRDX. Plant Science 259:86-93
Hisamatsu T, Sumitomo K, Shibata M, Koshioka M. 2017. Seasonal variability in dormancy and flowering competence in Chrysanthemum: chilling impacts on shoot extension growth and flowering capacity. JARQ 51:343-350
Iwata, H., Minamikawa, F. M., Kajiya-Kanegae, K., Ishimori, M. and Hayashi, T.（2016）Genomics-assisted breeding in fruit trees. Breed. Sci. 66: 100-115.
Higuchi Y, Hisamatsu T. 2016. LED lighting for urban agriculture. Springer,Part Ⅱ pp.57-73,75-89
Maguvu T.E, Shimizu-Yumoto H, Shibata M. 2016. Difference in flower longevity and endogenous ethylene production of portulaca umbraticola cultivars. The Horticulture Journal 85:70-75
Higuchi Y, Hisamatsu T. 2015. CsTFL1, a constitutive local repressor of flowering, modulates floral initiation by antagonising florigen complex activity in chrysanthemum. Plant Science 237: 1-7.
Nakano Y, Higuchi Y, Yoshida Y, Hisamatsu T. 2015. Environmental responses of the FT/TFL1 gene family and their involvement in flower induction in Fragaria x ananassa. Journal of Plant Physiology 177:60-66.
Nakano Y, Higuchi Y, Sumitomo K, Oda A, Hisamatsu T. 2015. Delay of flowering by high temperature in chrysanthemum: heat-sensitive time-of-day and heat effects on CsFTL3 and CsAFT gene expression. Journal of Horticultural Science and Biotechnology 90: 143-149.
Y. Zhang, Hayashi T., Kawabata S., and Yuhua Li. 2015. Relationship the between velvet-like texture of flower petals and light reflection from epidermal cell surfaces. Journal of Plant Research 128, 623-632.
Zhang L, Wang Y, Sun M, Wang J, Kawabata S, Li Y.2015. BrMYB4, a suppressor of genes for phenylpropanoid and anthocyanin biosynthesis, is downregulated by UV-B but not by pigment-inducing sunlight in turnip cv. Tsuda. Plant Cell Physiology 55: 2092-2101.
Lan X,Yang J, Cao M, Wang Y, Kawabata S, Li Y. 2015. Isolation and characterization of a J domain protein that interacts with ARC1 from ornamental kale (Brassica oleracea var. acephala). Plant Cell Reports 34:817-829.
Bai J, Kawabata S. 2015. Regulation of diurnal rhythms of flower opening and closure by light cycles，wavelength, and intensity in Eustoma grandiflorum. The Horticulture Journal 84: 148-155.
Ishimori M,Kawabata S.2014. Conservation and Diversification of Floral Homeotic MADS-box Genes in Eustoma grandiflorum. J. Japan. Soc. Hort. Sci. 83(2):172-180.
Noor Elahi Jan, Jalal-ud-Din, and Saneyuki Kawabata. 2014. Impact of saline-alkali stress on the accumulation of solids in tomato fruits. Pakistan Journal of Botany 46: 161-166.
樋口洋平 2014 電照栽培の基礎と実践：光の質・量・タイミングで植物をコントロール.誠文堂新光社, pp.30-36, 44-66.
樋口洋平 2014 植物の開花時期を制御するタンパク質アンチフロリゲンを世界で初めて発見．ニューカントリー 3月号 pp. 64-65.
樋口洋平 2014 開花制御の最前線-電照菊とアンチフロリゲン-．植調. 48 (4) pp 10-17.
Bo Zhou, Yu Wang,Yaguang Zhan, Yuhua Li, Kawabata S. 2013. Chalcone synthase family genes have redundant roles in anthocyanin biosynthesis and in response to blue/UV-A light in turnip(Brassica rapa ;Brassicaceae)American Journal of Botany 100(12): 1-10
Higuchi Y, Narumi T, Oda A, Nakano Y, Sumitomo K, Fukai S, Hisamatsu T. 2013 The gated induction system of a systemic floral inhibitor, antiflorigen, determines obligate short-day flowering in chrysanthemums. Proc. Natl. Acad. Sci. USA 110: 17137-17142.
Sumitomo K, Higuchi Y, Yamagata A, Hisamatsu T. 2013 Memory of prolonged winter cold inhibits flowering and increases long-day leaf number in the chrysanthemum cultivar ‘Nagano Queen’. Journal of Horticultural Science and Biotechnology 88: 361-367.
Nakano Y, Higuchi Y, Sumitomo K, Hisamatsu T. 2013 Flowering retardation by high temperature in chrysanthemums: involvement of FLOWERING LOCUS T-like 3 gene repression. Journal of Experimental Botany 64: 909-920.
Yoshioka S, Aida R, Yamamizo C, Shibata M, Ohmiya A. 2012. The carotenoid cleavage dioxygenase 4 (CmCCD4a) gene family encodes a key regulator of petal color mutation in chrysanthemum. Euphytica 184: 377-387
Kawabata S, Li Y.,Miyamoto K. 2012 EST sequencing and microarray analysis of the floral transcriptome of Eustoma gradiflorum. Scientia Horticulturae 144:230-235.
Wang Y, Zhou B, Sun M, Li Y, Kawabata S. 2012. UV-A light inducesanthocyanin biosynthesis in a manner distinct from synergistic blue + UV-B light and UV-A/blue light responses at different parts of the hypocotyls in turnip seedlings. Plant and Cell Physiology 53: 1470-1480.
Wu W, Luo D, Zhou B, Yan H, Li Y, Kawabata S. 2012. Development ofSSR markers polymorphic between cultivars in Brassica rapa subsp rapa. African journal of Biotechnology 11: 2654-2660.
Ono M, Hiyama S, Higuchi Y, Kamada H, Nitasaka E, Koyama T, Mitsuda N, Ohme-Takagi M, Sage-Ono K. 2012 Morphological changes in Ipomoea nil using chimeric repressors of Arabidopsis TCP3 and TCP5. Plant Biotechnology 29: 457-463.
Higuchi Y, Sumitomo K, Oda A, Shimizu H, Hisamatsu T. 2012 Day light quality affects the night-break response in the short-day plant chrysanthemum, suggesting differential phytochrome-mediated regulation of flowering. Journal of Plant Physiology 169: 1789-1796.
Sumitomo K, Higuchi Y, Aoki K, Miyamae H, Oda A, Ishiwata M, Yamada M, Nakayama M, Hisamatsu T. 2012 Spectral sensitivity of flowering and FT-like gene expression in response to a night break treatment in the chrysanthemum cultivar ‘Reagan’. Journal of Horticultural Science and Biotechnology 87: 461-469.
Oda A, Narumi T, Li T, Kando T, Higuchi Y, Sumitomo K, Fukai S, Hisamatsu T. 2012 CsFTL3, a chrysanthemum FLOWERING LOCUS T-like gene, is a key regulator of photoperiodic flowering in chrysanthemums. Journal of Experimental Botany 63: 1461-1477.
Kawabata S,Yokoo M.,Nii K.2011. Three-dimensional formation of corolla shapes in relation to the developmantal distortion of petals in Eustoma grandiflorum. Scientia Hortiticulturae 132:66-70.
Onozaki T, Yagi M, Tanase K, Shibata M 2011. Crossing and selections for six generations based on flower vase life to create lines with ethylene resistance or ultra-long vase life in carnation ( Dianthus caryophyllus L.). J. Japan. Soc. Hort. Sci. 80:486-498.
Tanase K, Onozaki, T, Sato S, Shibata M, Ichimura K 2011. Effect of age on the auto-catalytic ethylene production and the expression of ethylene biosynthetic gene Dc-ACS1 in petals of long-life carnations. JARQ 45:107-116
Kawabata S.,Miyamoto K,Li Y. 2011. cDNA microarray analysis of differential gene expression in tomato fruits exposed to blue,UV-A,and UV-A +UV-B. Acta Horticulturae 907:371-374.
Wang Q,Zhang Y, Kawabata S,and Li Y.2011. Double fertilization and embryogenesis if Eustoma grandiflorum. J.Japan.Soc.Hort.Sci. 80:351-357
Jan NE, Kawabata S.2011. Relationship between fruit soluble solid content and the sucrose concentration of the phloem sap at different leaf to fruit ratios in tomato. J.Japan.Soc.Hort.Sci. 80:314-321.
Nii K,Kawabata S.2011. The assessment of the association between the three-dimensional shape of the corolla and two-dimensional shapesof the petals by using Fourier descriptors and principal component analysis in lisianthus. J.Japan.Soc.Hort.Sci. 80:200-205.
Lee, O., Sugiyama, N. 2011. Histo-morphological changes in shoot apices treated with gibberellic acid in Lactuca sativa. Biologia Plantarum 55:479-484.
Sumugat, M. R., Lee, O., Mine, Y. and Sugiyama, N. 2011. Scientia dHorticulturae 129:422-428.
Neri, D, Lee, O., Savini, G., Kurokura, T. and Sugiyama, N. 2011. Lateral root formation in strawberry (Fragaria ananassa Duch.) revealed by histone H4 in situ hybridization. Plant Biosystems 145:406-410.
Sage-Ono K, Ozeki Y, Hiyama S, Higuchi Y, Kamada H, Mitsuda N, Ohme-Takagi M, Ono M. 2011 Induction of double flowers in Pharbitis nil using a class-C MADS-box transcription factor with Chimeric REpressor gene-Silencing Technology. Plant Biotechnology 28: 153-165.
Higuchi Y, Sage-Ono K, Sasaki R, Ohtsuki N, Hoshino A, Iida S, Kamada H, Ono M. 2011 Constitutive expression of the GIGANTEA ortholog affects circadian rhythms and suppresses one-shot induction of flowering in Pharbitis nil, a typical short-day plant. Plant Cell Physiology. 52: 638-650.
Sumugat, M. R., Lee, O., Nemoto, K. and Sugiyama, N. 2010. Quantitative trait loci analysis of flowering-time-related traits in tomato. Scientia Horticulturae 123:343-349.
Tanikawa N, Onozaki T, Nakayama M, Shibata M 2010. Maternal origin of ‘Tarokaja’and other wabisuke camellia cultivars indicated by chloroplast DNA variation. J.Japan. Soc. Hort. Sci. 79:77-83.
Yoshioka S, Sumitomo K, Fujita Y, Yamagata A, Onozaki T, Shibata M, Ohmiya A. 2010. Significance of CmCCD4a orthologs in apetalous wild chrysanthemum species responsible for white coloration of ray petals. Euphytica 171:295-300
道園美弦・久松完・大宮あけみ・柴田道夫 2010. 暗期開始時の短時間昇温処理によるアフリカンマリーゴールドの開花反応促進．植物環境工学 22:8-14
Zhou B, Zhao X, Kawabata S, Li Y. 2009. Transient expression of a foreign gene by direct incorporation of DNA into intact plant tissue through vacuum infiltration. Biotechnology Letters 31:1811-1815.
Kawabata S, Li Y, Saito T, Zhou B. 2009. Identification of differentially expressed genes during flower opening by suppression subtractive hybridization and cDNA microarray analysis in Eustoma grandiflorum. Scientia Horticulturae 122: 129-133.
福田直子・柴田道夫 2009. 施肥量がトルコギキョウの覆輪着色率に及ぼす影響．園芸学研究 8:187-192
Saneyuki Kawabata, Mihoshi Yokoo, Kaeko Nii. 2009. Quantitative analysis of corolla shapes and petal contours in single-flower cultivars of lisianthus. Scientia Horticulturae 122: 206-212
Ijiri T, Yokoo M, Kawabata S, and Igarashi T. 2008. Surface-based growth simulation for opening flowers. Proceedings Graphic Interface 2008. pp. 227-233.
Boonkorkaew, P., Hikosaka, S. and Sugiyama, N. 2008. Effect of pollination on cell division, cell enlargement, and endogenous hormones in fruit development in a gynoecious cucumber. Sci. Hort. 116(1): 1-7.
Cagas, C.C., Lee, O. N., Nemoto, K. and Sugiyama, N. 2008. Quantitative trait loci controlling flowering time and related traits in a Solanum lycopersicum x S. pimpinellifoliumcross. Sci. Hort. 116(2): 144-151.
Kawabata, S. and Chujo, W. 2008. Analysis of nitrogen and amino acid contents in cut and potted flowers of Eustoma grandiflorum. J. Japan. Soc. Hort. Sci. 77(2):192-198.
Ledesma, N.A., Nakata, M. and Sugiyama, N. 2008. Effectof high temperature stress on the reproductive growth of strawberry cvs. ‘Nyoho’ and ‘Toyonoka’. Sci. Hort. 116（2）: 186-193.
Sugiyama, N. and Santosa, E. 2008. Edible Amorphophallus in Indonesia.‐ Potential Crops in Agroforestry. Gadjah Mada University Press, Yogyakarta. 125 p.
Tanikawa N, Onozaki T, Nakayama M, Shibata M 2008 PCR-RFLP analysis of chloroplast DNA variations in the atpI-atpH spacer region of the genus Camellia. J.Japan. Soc. Hort. Sci. 77:408-417
Tanikawa N, Kashiwabara T, Hokura A, Abe T, Shibata M ,Nakayama M 2008 A peculiar yellow flower coloration of camellia using aluminum-flavonoid interaction. J.Japan. Soc. Hort. Sci. 77:402-407
Onozaki T, Yagi M, Shibata M 2008 Selection of ethylene-resistant carnations (Dianthus caryophyllus L.) by video recording system and their response to ethylene. Scientia Horiculturae 116:205-212
Aida R, Narumi T, Ohtsubo N, Yamaguchi H, Kato K, Shinmyo A, Shibata M 2008 Improved translation efficiency in chrysanthemum and torenia with a translational enhancer derived from the tobacco alcohol dehydrogenase gene. Plant Biotechnology 25:69-75
Tanase K, Onozaki T, Sato S, Shibata M, Ichimura K. 2008 Differential expression levels of ethylene biosynthetic pathway genes during senescence of long-lived carnation cultivars. Postharvest Biology and Technology 47:210-217
Mitsuda N, Umemura Y, Ikeda M, Shikata M, Koyama T, Matsui K, Narumi T, Aida R, Sasaki K, Hiyama T, Higuchi Y, Ono M, Isuzugawa K, Saito K, Endo R, Ikeda K, Nakatsuka T, Nishihara M, Yamamura S, Yamamura T, Terakawa T, Ohtsubo N, Ohme-Takagi M. 2008 FioreDB: a database of phenotypic information induced by the chimeric repressor silencing technology (CRES-T) in Arabidopsis and floricultural plants. Plant Biotechnology 25: 37-43.
Santosa, E., Lian, C., Paisooksantivatana, Y. and Sugiyama, N. 2007. Isolation and development of polymorphic microsatellite markers in Amorphophallus paeonnifolius (Dennst.) Nicolson, Araceae. Mol. Ecol. Note. 7（4）: 814-817.
Mine, Y., Suematsu, M. and Sugiyama, N. 2007. Aeration and heating improve slow sand filtration as a disinfection system for closed hydroponic systems. Environ. Control Biol. 45(3): 179-187.
Zo, B., Li, Y., Xu, Z., Yan, H., Homma, S. and Kwabata, S. 2007. Ultraviolet A-specific induction of anthocyanin biosynthesis in the swollen hypocotyls of turnip (Brassica rapa). J. Exp. Bpt. 58(7):1771-1781.
稲葉幸雄・吉田智彦・杉山信男 2007. イチゴの促成栽培における主茎腋芽の発達に及ぼす定植後の温度および施肥量の影響. 園芸学研究 6(3): 431-434.
Higuchi Y, Sage-Ono K, Kamada H, Ono M. 2007 Isolation and characterization of novel genes controlled by short-day treatment in Pharbitis nil. Plant Biotechnology 24: 201-207.
Sugiyama, N., Santosa, E., Lee, O., Hikosaka, S. and Nakata, M. 2006. Classification of elephant foot yam (Amorphophallus peoniifolius) cultivars in Java using AFLP markers. Jpn. J. Trop. Agr. 50(4): 215-218.
Suganda，A.G., Sukurasno, Nishiyama, Y., Yamakawa, T. and Sugiyama, N. 2006. Random amplified polymorphic DNA analysis to distinguish Brugmansia suaveloens, B. candida and B. versicolor. Plant Biotechnology 24(5): 519-520.
峯洋子・秦野茂・手島英敏・白井深雪・久保田浩史・角谷架織・杉山信男 2006. 砂栽培における培地への資材混和がトマト果実生産と培地特性に及ぼす影響. 園芸学研究5(4): 381-388.
Santosa, E., Sugiyama, N., Nakata, M. and Lee, O. 2006. The effect of different seed corm sections on the growth and yield of elephant foot yams. Jpn. J. Trop. Agr. 50(3): 116-120.
Lee, O. and Sugiyama, N. 2006. Changes in carbohydrate composition of lettuce stems during development. J. Hort. Sci. Biotech. 81(5): 928-932.
Kurokura, T., Inaba, Y. and Sugiyama, N. 2006. Histone H4 gene expression and morphological changes on shoot apices of strawberry (Fragaria x ananassa Duch.) during floral induction. Sci. Hort. 110(2): 192-197.
Santosa, E., Sugiyama, N., Lee, O. and Nakata, M. 2006. Arrangement of cormels on corms of edible Amorphophallus species in Indonesia. Jpn. J. Trop. Agr. 50(2): 92-94.
Santosa, E., Sugiyama,N.,Nakata，M. and Lee, O. 2006. Growth and corm production of Amorphophallus under different shading levels in Indonesia. Jpn. J. Trop. Agr. 50(2): 87-91.
Santosa, E.,Sugiyama, N.,Nakata, M., Lee, O., Trikoesoemaningtyas and Sopandie, D. 2006.Flower induction in elephant foot yams using gibberellic acid (GA3). Jpn. J. Trop. Agr. 50(2): 82-86.
Hikosaka, S., Boonkorkaew, P., Ochi, Y.and Sugiyama, N. 2006. The rate of flower differentiation and development of mono- and multi-pistillate type cucumbers. J. Hort. Sci. Biotech. 81(2): 303-309.
Santosa, E., Sugiyama, N., Nakata, M., Mine, Y., Lee, O. and Sopandie, D. 2006. Effect of weeding frequency on the growth and yield of elephant foot yams in agroforestry systems. Jpn. J. Trop. Agr. 50(1): 7-14.
Kawabata, S., Sasaki, H. and Sakiyama, R. 2005. Role of transpiration from fruits in phloem transport and fruit growth in tomato fruits. Physiol. Plant. 124(3):371-380.
Nakata, M., Sugiyama, N. andPankasemsuk,T. 2005. Morphological study ofthestructureand developmentof longaninflorescence. J.Amer. Soc. Hort. Sci. 130(6): 793-797.
Sutarto, I., Gandanegara,S.,Arwin, andSugiyama, N. 2005. Estimation of vascular discontinuiy betweenrootstock and scion of rambutan and durian using isotope technique at the nursery stage. Jpn. J. Trop. Agr. 49(3):233-237.
Santosa, E.,Sugiyama, N.,Nakata, M.,Kawabata, S. and Kubota, N. 2005. Cultivation of the Japanese persimmon in West Java, Indonesia.Jpn. J. Trop. Agr., 49(3): 220-226.
Santosa,E.,Sugiyama, N.,Nakata, M.and Kawabata,S. 2005. Profitability of intercropping with vanilla in timber plantation, West Java, Indonesia.Jpn. J. Trop. Agr.49(3): 207-214.
Kurokura, T., Inaba, Y., Neri, D. and Sugiyama, N. 2005. A morphological study of the development of the secondary inflorescences in strawberry (Fragaria x ananassaDuch.). Ann. Appl. Biol. 146(4): 511-515.
Neri, D.,Sugiyama, N., and Inujima, A. 2005. Effect of organic residues on strawberry root growth.Int. J. Fruit Sci. 5(1): 127-137.
Nakata, M., Sugiyama, N. and Pankasemsuk,T. 2005. Problems confronted by longangrowers in the northern Thailand after adoption of potassium chlorate. Jpn. J. Trop. Agr. 49(2): 140-146.
稲葉幸雄・吉田智彦･杉山信男2005. イチゴのクラウンの傾斜と花房伸長方向の関係. 園芸学研究4(2):159-163.
Ledesma,N., and Sugiyama, N. 2005. Pollen quality and performance in strawberry plants exposed to high-temperature stress. J. Amer. Soc. Hort. Sci. 130(3): 341-347.
Santosa, E., Sugiyama, N., Hikosaka, S., Takano, T. and Kubota, N. 2005. Intercropping patterns in cacao, rubber, and timber plantations in West Java, Indonesia.Jpn. J. Trop. Agr. 49(1): 21-29.
Lee, O.N., Nemoto, K. and Sugiyama, N. 2005. Histone H4 gene expression in shoot apices associated with floral initiation in lettuce. J. Japan. Soc. Hort. Sci. 74(2): 121-126.
Hikosaka, S. and Sugiyama, N. 2005. Effect of fruit-load on growth patterns of fruit at the middle nodes of gynoecious-type cucumbers. J. Hort. Sci. Biotech. 80(1): 130-134.
Kurokura, T.,Iwama, T., Inaba, Y. and Sugiyama, N. 2005. Effects of day length on the developmental pattern of axillary buds in June-bearingstrawberry plants.J. Hort. Sci. Biotech.80(1): 139-142.
Santosa, E., Suigyama, N., Hikosaka, S., Nakata, M. and Bintoro, H.M.H. 2004. Effect of planting depth on growth and corm shape of two Amorphophalllus species cultivated in Indonesia. Jpn. Trop. Agr. Sci. 48(4): 240-245.
Santosa, E., Sugiyama, N., Sulistyono,E. and Sopandie, D. 2004. Effect of watering frequency on early growth of elephant foot yams. Jpn. J. Trop. Agr.48(4): 235-239.
Sugiyama, N., T. Iwama, Y. Inaba, T.Kurokura and D. Neri. 2004. Varietal differences in the formation of branch crowns in strawberry plants. J. Japan. Soc. Hort. Sci. 73(3):216-220.
Ledesma,N.A., S. Kawabata and N. Sugiyama. 2004. Effects of high temperature on protein expression in strawberry plants. Biologia Plantarum, 48(1):73-79.
Hikosaka,S.and N.Sugiyama.2004. Characteristics of flower and fruit development of multi-pistillate type cucumbers. J. Hort. Sci. Biotech.79(2):219-222.
Sugiyama, N., Iwama, T., Inaba, Y，Kurokura, T. and Neri, D. 2004. Varietal differences in the formation of branch crowns in strawberry plants. J. Japan. Soc. Hort. Sci.73(3):216-220.
Isumiyati Sutrato, Arwin,and N. Sugiyama. 2004. Successful budding method of rambutan propagation. Jpn.J.Trop.Agr.48(3):198-201.
Santosa,E., N.Sugiyama, S.Hikosaka and T.Takano. 2004. Classification of Amorphophallus variabilis in West Java, Indonesia, Based on morphological characteristics of inflorescences. Jpn.J.Trop.Agr.48(1):25-34.
Hikosaka,S.and N.Sugiyama. 2003.Fruit growth patterns and abortion in multi-pistillate type cucumbers. J. Hort. Sci.Biotech.78(6):775-779.
Lee,O.N., N.Sugiyama and S.Kosuge. 2003. Allometry of stem growth in lettuce plants. J.Japan.Soc.Hort.Sci.72(1):24-28.
Li,Y., H.Yan, B.Zhou, S.Kawabata and R.Sakiyama. 2003. Role of chalcone synthase and dihydroflavonol reductase in light dependent accumulation of anthocyanins in `Toyonoka' strawberry fruits. Acta Hort. 626:361-366.
Neri,D., N.Sugiyama, T.Iwama and H.Akagi. 2003. Effects of apical pinching on the development of axillary buds in strawberry plants. J.Japan.Soc.Hort.Sci.72(5):389-392.
Santosa,E., N.Sugiyama, S.Hikosaka and S. Kawabata. 2003. Cultivation of Amorphophallus muelleri Blume in timber forests of East Java, Indonesia. Jpn.J.Trop.Agr.47(3):190-197.
Santosa,E., N.Sugiyama and S. Kawabata. 2003 Reasons for farmer's decision to cultivate elephant foot yams in Kuningan district,West Java,Indonesia. Jpn.J.Trop.Agr.47(2):83-89.
堀 健夫・杉山信男・岩本純明. 2003. 農業立地の違いが西ジャワ・ボゴール県におけるキャッサバの生産と役割に及ぼす影響. 熱帯農業47(2)：135-141.
Han,S.H. and S.Kawabata. 2002. Changes in carbohydrate and water contents of kiwifruit (Actinidia deliciosa) during growth. J.Japan.Soc.Hort.Sci.71(3):322-327.
Kawabata,S., S.H.Han and R.Sakiyama. 2002.Effect of mechanically restricting tomato fruit enlargement on the partitioning of soluble sugars. J.Japan.Soc.Hort.Sci.71(4):480-484.
Kawabata,S., Y.Li,M.Adachi,H.Maruyama,E.Ozawa and R.Sakiyama. 2002. Role of photoreceptor-and sugar-mediated reactions in light dependent anthocyanin production in lily and stock flowers. J.Japan. Soc.Hort.Sci.71(2):220-225.
Kubota,N.,H.Y.Hadikusumah,O.S.Abdoellah and N.Sugiyama. 2002. Changes in the performance of the homegardens in west Java for twenty years (1) Changes in the function of homegardens. Jpn.J.Trop.Agr.46(3):143-151.
Kubota,N.,H.Y.Hadikusumah,O.S.Abdoellah and N.Sugiyama. 2002. Changes in the performance of the homegardens in west Java for twenty years (2) Changes in the utilization of cultivated plants in the homegardens. Jpn.J.Trop.Agr.46(3):152-161.
Neri,D., N.Sugiyama and A.Inujima 2002. Effect of organic residues on strawberry root growth. Acta Hort. 567：503-506.
Pan,Z., S.Kawabata,N.Sugiyama,R.Sakiyama and Y.Cao. 2002 Genetic diversity of cultivated resources of pear in north China. Acta Hort. 587：187-194.
Santosa,E., N.Sugiyama, Lontoh A.P., Sutoro, S.Hikosaka and S. Kawabata. 2002. Cultivation of Amorphallus paeoniifolius (Dennst.) Nicolson in home gardens in Java. Jpn.J.Trop.Agr.46(2):94-99.
Santosa,E., N.Sugiyama,Chozin,M.A.,Lontoh A.P.,Sudiatso S., S.Kawabata and S.Hikosaka,Sutoro and Hidayat,A. 2002. Morphological and nutritional characterization of elephant foot yam in Indonesia. Jpn.J.Trop.Agr.46(4):265-271.
Yano,M., N.Sugiyama and T.Thunyarpar. 2002. Use of mutiple regression analysis to identify the factors causing year-to-year variations in longan yield in Thailand. Jpn.J.Trop.Agr.46(2):66-71.
Yano,M., N.Sugiyama and T.Thunyarpar and Y.Yamaki. 2002. Problems confronting longan growers in northern Thailand. Jpn.J.Trop.Agr.46(2):72-76.
Li, Y., R. Sakiyama, H. Maruyama and S. Kawabata. 2001. Regulation of anthocyanin biosynthesis during fruit development in ' Nyoho' strawberry. J. Japan. Soc. Hort. Sci.70(1) 28-32.
Sugiyama,N. 2001. Organic production of vegetables in Japan. Proceedings of International Workshop on Organic and Green Food Production in Urban and Peri-urban Areas.p.58-63. August 26-28, 2001, Beijing.
2020
杉浦尚吾・佐々木伸大・樋口洋平・柴田道夫．2020．ハナスベリヒユの黄色花色発現に関わる遺伝子の解明．園芸学研究．第19巻（別1）：182
櫻田実沙季・杉浦尚吾・樋口洋平・柴田道夫．2020．ハナスベリヒユのベタレイン発現に関する周縁キメラの解析． 園芸学研究．第19巻（別1）：183
楊 雨晴・住友克彦・ 柴田道夫・久松 完・樋口 洋平．2020．Screening and expression analyses of genes related to dormancy-associated flowering competence in Chrysanthemum seticuspe．園芸学研究．第19巻（別1）： 189
呉 業氷・有馬秀和・柴田道夫・樋口洋平．2020．Functional analyses of CYC2 genes involved in capitulum development in Chrysanthemum seticuspe . 園芸学研究．第19巻（別1）：190
松澤陸斗・柏村友実子・柴田道夫・樋口洋平．2020．花ハスの八重化要因の探索と C クラス遺伝子の時空間的発現解析 ．園芸学研究．第19巻（別1）：388
藤倉理帆・樋口洋平・柴田道夫．2020．キクの淡黄色花系統におけるカロテノイド酸化開裂酵素遺伝子の発現解析．園芸学研究．第19巻（別1）：391
伊藤穂乃花・杉浦尚吾・樋口洋平・柴田道夫．2020．終日開花性ハナスベリヒユにおけるエチレン関連遺伝子の発現解析．園芸学研究．第19巻（別1）：412
2019
杉浦尚吾・櫻田実沙季・佐々木伸大・樋口洋平・柴田道夫 2019 ハナスベリヒユにおける黄色花色発現とベタキサンチン生成との関係．園芸学研究第18巻（別１）：231 （園芸学会平成31年度春季大会、明治大学農学部生田キャンパス 川崎市、2019.3.23～24）
樋口洋平・松澤陸斗・石川祐聖・工藤新司・和泉隆誠・柴田道夫 2019 花ハス遺伝資源のレンコン形質に関する多様性解析～第2報～ 園芸学研究第18巻（別１）：382
櫻田実沙季・杉浦尚吾・樋口洋平・柴田道夫 2019 ハナスベリヒユ交雑実生におけるさまざまな花色分離について 園芸学研究第18巻（別１）：418
松澤陸斗・杉浦尚吾・佐々木伸大・樋口洋平・柴田道夫 2019 赤色系ハナスベリヒユにおける花色変化について 園芸学研究第18巻（別１）：419
2018
Higuchi Y, Narumi T, Sumitomo K, Hisamatsu T (October 2018) SPL13-like gene regulate dormancy-associated flowering incompetence in chrysanthemum. 6th Plant Dormancy Symposium. Kyoto-Japan (Poster presentation)
樋口洋平・石川祐聖・工藤新司・和泉隆誠・柴田道夫 2018 花ハス遺伝資源のレンコン形質に関する多様性解析 園芸学研究第17巻（別１）：401 （園芸学会平成30度春季大会 近畿大学農学部 奈良市、2018.3.24～25）
樋口洋平、久松完、中野善公、平川英樹、白澤健太、磯部祥子、住友克彦 (2018年9月)キクタニギクの全ゲノムシーケンスを利用した花成関連遺伝子の網羅的探索。園芸学会平成30年度秋季大会（鹿児島）口頭発表
肖 澤芝・樋口洋平・柴田道夫 2018 ハナスベリヒユ交雑後代で認められた花色分離について 園芸学研究第17巻（別１）：417
杉浦尚吾・柴田道夫・樋口洋平 2018 ハナスベリヒユにおける黄色花の遺伝様式について 園芸学研究第17巻（別１）：418
有馬秀和・柴田道夫・樋口洋平 2018 キクタニギクにおけるCYC2遺伝子の時空間的発現と頭状花序形成に関連する遺伝子の探索 園芸学研究第17巻（別１）：423
2017
柴田道夫・樋口洋平・高橋麻美・西崎哲也・王 力超・大宮あけみ・住友克彦・草場 信 2017 キク属栽培種および野生種におけるカロテノイド酸化開裂酵素遺伝子の多様性解析 園芸学研究第16巻（別１）：293 （園芸学会平成29年度秋季大会 酪農学園大学 江別市、2017.9.2～4）
マグヴタワンダエリアス・樋口洋平・柴田道夫 2017 ハナスベリヒユにおけるde novoトランスクリプトーム解析（De novo transcriptome analysis of Portulaca umbraticola by RNA-seq） 園芸学研究第16巻（別2）：304
加藤眞悟・肖 澤芝・白井深雪・樋口洋平・柴田道夫 2017 キクの枝変わり‘デージー’系品種の交雑後代における花色変異の解析 園芸学研究第16巻（別１）：414 （園芸学会平成29年度春季大会 日本大学生物資源科学部 藤沢市、2016.3.19～20）
細島玲菜・千葉陽平・樋口洋平・柴田道夫 2017 ハナスベリヒユ実生の生育開花と花色の変異について 園芸学研究第16巻（別１）：421
有馬秀和・久松 完・柴田道夫・樋口洋平 2017 キクの頭状花形成過程におけるCYC2遺伝子の単離と発現解析 園芸学研究第16巻（別１）：422
和泉隆誠・石川祐聖・工藤新司・柴田道夫・樋口洋平 2017 花ハスのFT/TFL様開花関連遺伝子の単離と発現解析 園芸学研究第16巻（別１）：426
2016
Shibata M (September 2016) Recent progress of horticulture in Japan. The Second Asian Horticultural Congress. Chengdu-China (Plenary lecture)
Higuchi Y, Waizumi R, Ishikawa Y, Kudo S, Shibata M (September 2016) Flowering time regulation in Sacred lotus: Identification and characterization of PEBP family genes. The Second Asian Horticultural Congress. Chengdu-China (Poster presentation)
王 力超・樋口洋平・柴田道夫 2016 キク属二倍体野生種白色花弁で発現しているカロテノイド酸化開裂酵素遺伝子の多様性 園芸学研究第15巻（別2）：000 （園芸学会平成28年度秋季大会 名城大学天白キャンパス 名古屋市、2016.9.10～11）
柏村友実子、河鰭実之、樋口洋平 (2016年9月) ハスの一重咲きと八重咲き品種における花器官形成遺伝子の比較解析．園芸学会平成28年度秋季大会（愛知）ポスター発表
高橋麻美・樋口洋平・住友克彦・大宮あけみ・柴田道夫 2016 キク品種の舌状花弁におけるカロテノイド酸化開裂酵素遺伝子の発現解析 園芸学研究第15巻（別１）：204 （園芸学会平成28年度春季大会 東京農業大学農学部厚木キャンパス 厚木市、2016.3.26～27）
千葉陽平・柴田道夫 2016 ハナスベリヒユにおける花粉稔性低下の超微細構造解析 園芸学研究第15巻（別１）：215
マグヴタワンダエリアス・柴田道夫 2016 光周期がハナスベリヒユの開花時刻に及ぼす影響（Effect of different photoperiods on flower opening time in Portulaca umbraticola） 園芸学研究第15巻（別１）：216
西崎哲也・樋口洋平・高橋麻美・草場 信・谷口研至・住友克彦・大宮あけみ・柴田道夫 2016キク属野生種におけるカロテノイド酸化開裂酵素遺伝子の多様性解析 園芸学研究第 巻（別１）：425
2015
高橋麻美・樋口洋平・住友克彦・大宮あけみ・柴田道夫 2015キク品種のカロテノイド酸化開裂酵素遺伝子の多様性解析 園芸学研究第14巻（別2）：509 （園芸学会平成27年度秋季大会 徳島大学常三島キャンパス 徳島市、2015.9.26～27）
マグヴタワンダエリアス・柴田道夫 2015終日開花性ハナスベリヒユ品種の開花特性（Flowering characteristics of Portulaca umbraticola cultivars with better flower longevity）園芸学研究第14巻（別１）：403 （園芸学会平成27年度春季大会 千葉大学西千葉キャンパス 千葉市、2015.3.28～29）
千葉陽平・西崎哲也・柴田道夫 2015ハナスベリヒユ品種・系統における不稔性の解析 園芸学研究第14巻（別1）：409
2014
Higuchi Y (October 2014) Anti-florigenic regulation of photoperiodic flowering in a typical short-day plant chrysanthemum. First International Horticulture Research Conference. Nanjing-China (Invited)
柴田道夫・大久保裕史・草場 信・谷口研至・住友克彦・大宮あけみ 2014 キク属植物におけるカロテノイド酸化開裂酵素遺伝子（CCD4a）の多様性 園芸学研究第13巻（別2）：257 （園芸学会平成26年度秋季大会 佐賀大学本庄キャンパス 佐賀市、2014.9.27～28）
マグヴタワンダエリアス・湯本弘子・柴田道夫 2014 ハナスベリヒユの花持ち性とエチレン感受性の品種間差異 （Difference in flower longevity and ethylene sensitivity between Portulaca umnbraticola cultivars） 園芸学研究第13巻（別2）：278
2013
柴田道夫・間竜太郎 2013 ハナスベリヒユの学名について 園芸学研究第12巻（別１）：215 （園芸学会平成25年度春季大会 東京農工大学小金井キャンパス、小金井市、2013.3.23～24）
大久保裕史・大宮あけみ・住友克彦・柴田道夫 2013 キク属野生種におけるカロテノイド酸化開裂酵素遺伝子の塩基配列の多様性 園芸学研究第12巻（別１）：425
マグヴタワンダエリアス・山口博康・柴田道夫 2013 ハナスベリヒユ品種の核DNA量および倍数性 園芸学研究第12巻（別１）：436