Publications
Papers in peer-review journals
Niimura Y*, Biswa BB, Kishida T, Toyoda A, Fujiwara K, Ito M, Touhara K, Inoue-Murayama M, Jenkins SH, Adenyo C, Kayang BB, Koide T*. (2024) Synchronized Expansion and Contraction of Olfactory, Vomeronasal, and Taste Receptor Gene Families in Hystricomorph Rodents. Mol. Biol. Evol. 41, msae071. [press release (日本語)] open access
Hirose A*, Nakamura G, Nikaido M, Fujise Y, Kato H, Kishida T. (2024) Localized expression of olfactory receptor genes in the olfactory organ of common minke whales. Int. J. Mol. Sci. 25, 3855. open access
Borghezan EA*, Pires THS, Zuanon J, Sugiura H, Kohshima S, Kishida T. (2024) Unstable environmental conditions constrain the fine-tune between opsin sensitivity and underwater light in an Amazon forest stream fish. J. Evol. Biol. 37, 212-224.
Kishida T*, Namigata S, Nakanishi T, Niiyama Y, Kitagawa H. (in press) Dolphins from a prehistoric midden imply long-term philopatry of delphinids around Tokyo Bay. Biol. J. Linn. Soc.
Kishida T*. (2023) Tadpoles and frogs have a different sense of taste. Proc. Natl. Acad. Sci. U. S. A. 120, e2300973120. [A commentary on Hao et al. (2023)] open access
Suzuki M*, Ohno K, Sawayama E, Morinaga S, Kishida T, Matsumoto T, Kato H. (2023) Genomics reveals a genetically isolated population of the Pacific white-sided dolphin (Lagenorhynchus obliquidens) distributed in the Sea of Japan. Mol. Ecol. 32, 881-891. (free-access link) [press release (日本語)]
Kishida T*, Ohashi M, Komatsu Y. (2022) Genetic diversity and population history of the Japanese black bear (Ursus thibetanus japonicus) based on the genome-wide analyses. Ecol. Res. 37, 647-657.
Farnkopf IC*, George JC, Kishida T, Hillmann DJ, Suydam RS, Thewissen JGM. (2022) Olfactory epithelium and ontogeny of the nasal chambers in the bowhead whale (Balaena mysticetus). Anat. Rec. 305, 643-667. (free-access link)
Kishida T*. (2021) Olfaction of aquatic amniotes. Cell Tissue Res. 383, 353-365. (free-access link)
Kishida T*, Toda M, Go Y, Tatsumoto S, Sasai T, Hikida T. (2021) Population history and genomic admixture of sea snakes of the genus Laticauda in the West Pacific. Mol. Phylogenet. Evol. 155, 107005.
Seiko T, Kishida T, Toyama M, Hirayama T, Okitsu T, Wada A, Toda M, Satta Y, Terai Y*. (2020) Visual adaptation of opsin genes to the aquatic environment in sea snakes. BMC Evol. Biol. 20, 158. [press release (日本語)] open access
Suzuki M*, Anraku M, Hakamata W, Kishida T, Ueda K, Endoh T. (2020) Antioxidative potency of dolphin serum albumin is stronger than that of human serum albumin irrespective of substitution of 34cysteine with serine. Front. Physiol. 11, 598451. open access
Sato Y, Ogden R, Kishida T, Nakajima N, Maeda T, Inoue-Murayama M*. (2020) Population history of the golden eagle inferred from whole-genome sequencing of three of its subspecies. Biol. J. Linn. Soc. 130, 826-838. open access
Moura AE*, Shreves K, Pilot M, Andrews KR, Moore DM, Kishida T, Möller L, Natoli A, Gaspari S, McGowen M, Chen I, Gray H, Gore M, Culloch RM, Kiani MS, Willson MS, Bulushi A, Collins T, Baldwin R, Willson A, Minton G, Ponnampalam L, Hoelzel AR*. (2020) Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers. Mol. Phylogenet. Evol. 146, 106756. open access
Kishida T*, Go Y, Tatsumoto S, Tatsumi K, Kuraku S, Toda M. (2019) Loss of olfaction in sea snakes provides new perspectives on the aquatic adaptation of amniotes. Proc. R. Soc. B 286, 20191828. [press release (日本語)] open access
Suzuki H, Nishida H, Kondo H, Yoda R, Iwata T, Nakayama K, Enomoto T, Wu J, Moriya-Ito K, Miyazaki M, Wakabayashi Y, Kishida T, Okabe M, Suzuki Y, Ito T, Hirota J, Nikaido M*. (2018) A single pheromone receptor gene conserved across 400 million years of vertebrate evolution. Mol. Biol. Evol. 35, 2928-2939. [press release (日本語)] open access
Kutsuma R, Sasai T, Kishida T*. (2018) How snakes find prey underwater: sea snakes use visual and chemical cues for foraging. Zool. Sci. 35, 483-486. [Cover Photo] open access
Hirose A, Kishida T, Nakamura G*. (2018) Nasal mucosa resembling an olfactory system in the common minke whale (Balaenoptera acutorostrata). Cetacean Population Studies 1, 25-28. open access
Hayakawa T*, Sawada A, Tanabe AS, Fukuda S, Kishida T, Kurihara Y, Matsushima K, Liu J, Akomo‑Okoue EF, Gravena W, Kashima M, Suzuki M, Kadowaki K, Suzumura T, Inoue E, Sugiura H, Hanya G, Agata K. (2018) Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island. Primates 59, 423-436.
Kishida T*, Suzuki M*, Takayama A. (2018) Evolution of the alternative AQP2 gene: acquisition of a novel protein-coding sequence in dolphins. Mol. Phylogenet. Evol. 118, 54-57.
Kishida T*. (2017) Population history of Antarctic and common minke whales inferred from individual whole-genome sequences. Mar. Mamm. Sci. 33, 645-652.
Asahara M*, Saito K, Kishida T, Takahashi K, Bessho K. (2016) Unique pattern of dietary adaptation in the dentition of Carnivora: its advantage and developmental origin. Proc. R. Soc. B 283, 20160375. open access
Kishida T*, Thewissen JGM, Usip S, Suydam RS, George JC. (2015) Organization and distribution of glomeruli in the bowhead whale olfactory bulb. PeerJ 3, e897. open access
Kishida T*, Thewissen JGM, Hayakawa T, Imai H, Agata K. (2015) Aquatic adaptation and the evolution of smell and taste in whales. Zool. Lett. 1, 9. open access
Kishida T*, Hayano A, Inoue-Murayama M, Hikida T. (2013) Pairwise comparison of the orthologous olfactory receptor genes between two sympatric sibling sea kraits of the genus Laticauda in Vanuatu. Zool. Sci. 30, 425-431.
Tanimura A, Liu W, Yamada K, Kishida T, Toyohara H*. (2013) Animal cellulases with a focus on aquatic invertebrates. Fisheries Sci. 79, 1-13.
Kishida T*, Thewissen JGM. (2012) Evolutionary changes of the importance of olfaction in cetaceans based on the olfactory marker protein gene. Gene 492, 349-353.
Thewissen JGM*, George J, Rosa C, Kishida T. (2011) Olfaction and brain size in the bowhead whale (Balaena mysticetus). Mar. Mamm. Sci. 27, 282-294.
Kishida T*, Hikida T. (2010) Degeneration patterns of the olfactory receptor genes in sea snakes. J. Evol. Biol. 23, 302-310. open access
Kishida T*. (2008) Pattern of the divergence of olfactory receptor genes during tetrapod evolution. PLoS ONE 3, e2385. open access
Kishida T*, Kubota S, Shirayama Y, Fukami H. (2007) The olfactory receptor gene repertoires in secondary-adapted marine vertebrates: evidence for reduction of the functional proportions in cetaceans. Biol. Lett. 3, 428-430.
(*: corresponding author)
Books / Book chapters
岸田拓士 (2018) ゲノムから探るクジラの進化. In: 京都大学野生動物研究センター 編, 野生動物. 京都通信社. pp.56-57. ISBN: 978-4-903473-60-4.
Kishida T. (2017) Evolution of the mammalian brain with a focus on whale olfactory bulbs. In: Brain evolution by design (Shigeno S, Murakami Y and Nomura T, eds.), Springer Japan, Tokyo, pp. 329-342. ISBN: 978-4-431-56467-6.
岸田拓士 (2016) クジラの鼻から進化を覗く. 慶応義塾大学出版会. ISBN: 978-4-7664-2295-5.
Shichida Y, Yamashita T, Imai H, Kishida T. (2013) Evolution and senses. Springer Japan, Tokyo. ISBN: 978-4431542216.
岸田拓士 (2013) 海洋環境への適応進化をウミヘビに探る. In: 京都大学総合博物館企画展「海」実行委員会 編, 海は百面相. 京都通信社. pp.188-189. ISBN: 978-4-903473-53-6.
Takahashi J, Kishida T, Toyohara H. (2013) Poly-alanine protein Shelk2 from Crassostrea species of oysters. In: Recent Advances in Pearl Research (Watabe S, Maeyama K and Nagasawa H, eds.), TERRAPUB, Tokyo. pp. 167-181.
Benton MJ [著], 鈴木寿志, 岸田拓士 [共訳] (2013) 生命の歴史―進化と絶滅の40億年. 丸善出版. ISBN:978-4621086667.
Reviews, Conference proceedings, etc.
岸田拓士 (2024) 1900 年に伊豆半島で捕獲されたニホンツキノワグマ Ursus thibetanus japonicus のミトコンドリアDNA ハプロタイプ. 東海自然誌 17, 53-56.
岸田拓士 (2024) 古代DNA. In: 最新 地学事典（地学団体研究会 編）.
小川紋, 村田学博, 水本嗣郎, 森主博貴, 石神勝幸, 長岡宏美, 山田辰美, 岸田拓士 (2023) 静岡県に分布するヤリタナゴTanakia lanceolata の遺伝的特徴. 東海自然誌 16, 7-12.
岸田拓士 (2022) 羊膜類の海洋環境適応と嗅覚の進化. 科学（岩波書店）92(12), 1056-1059.
岸田拓士 (2021) [連載: 県勢標本 第12回] ナウマンゾウ. 静岡新聞 2021年1月25日朝刊5面.
Farnkopf IC, Kishida T, McKenna BR, Usip S, Thewissen JGM. (2019) Nasal chambers of the bowhead whale (Cetacea: Balaena mysticetus): embryology and histology. Journal of Morphology 280, S119.
Asahara M, Kishida T. (2019) Investigation of dental evolution using a combined analysis of comparative morphology and molecular evolution. Journal of Morphology 280, S77.
浅原正和, 岸田拓士, 新村芳人, 鈴木仁 (2018) 生物多様性から抽出された情報により多様性形成の遺伝的・発生学的・適応的基盤をさぐる. 哺乳類科学 58(1), 119-120.
岸田拓士 [監修] (2017) クジラから学ぶ「感覚器の進化」. Felicite vol. 5: 2-9.
岸田拓士 (2016) 日本味と匂学会第49回大会 若手シンポジウム 羊膜類の海洋環境適応と嗅覚の進化. 日本味と匂学会誌 23(1), 19-25.
岸田拓士 (2016) クロミンククジラゲノムの解読. 勇魚 64, 13-17.
岸田拓士 (2015) 鯨類は海洋環境への適応進化の過程で嗅球の背側領域を失った. Aroma Research 16(2): 137-139.
浅原正和, 斎藤和幸, 岸田拓士, 高橋克, 別所和久 (2013) クマ科の臼歯はどう進化したか：分類群に特徴的な形態形質の発生学的基盤をさぐる. 霊長類研究 Supplement 29, 82.
久保田信, 山口一夫, 岸田拓士 (2012) 和歌山県田辺湾に最近の20年間に漂着・座礁・迷入したクジラ類（哺乳類）. 南紀生物 54(1): 79-80.
久保田信, 田名瀬英朋, 岸田拓士 (2010) 和歌山県白浜町沿岸に出現したヒロオウミヘビ Laticauda laticaudata (Linnaeus) (コブラ科; ウミヘビ亜科). くろしお 29, 12-13.
Rosa C, Thewissen JGM, Kishida T, Nummela S, George C, Suydam R. (2009) A summary of ongoing bowhead whale sensory research in Northern Alaska. Proceedings of the International Whaling Commission (IWC) Scientific Committee, SC-61-BRG13.
豊原治彦, 高橋潤, 東畑顕, 高木雅哉, 岸田拓士 (2009) 貝殻から発見されたクモ糸タンパク質. 月刊地球 31, 588-593.
岸田拓士 (2008) 四足動物の海洋環境適応と環境受容体遺伝子の進化. 月刊海洋 40, 601-605.
岸田拓士, 森阪匡通, 久保田信, 天野雅男 (2003) 和歌山県白浜町番所崎の南浜にて発見されたハンドウイルカ Tursiops truncatus. 漂着物学会誌 1, 25-27.
岸田拓士 (1999) 伊豆諸島のハンドウイルカ. モンキー 43, 12-13.
Preprints
Hirose A*, Nikaido M, Nakamura G, Fujise Y, Kato H, Kishida T. Localized expression of the olfactory receptor genes in the olfactory organ of common minke whales. Authorea. July 14, 2023.