Publications
Peer-Reviewed articles:
Sengupta, P.*, Muthamilselvi Sivabalan, S.K.*, Singh, N.K., Raman, K. and Venkateswaran, K., 2024. Genomic, functional, and metabolic enhancements in multidrug-resistant Enterobacter bugandensis facilitating its persistence and succession in the International Space Station. Microbiome, 12(1), p.62. Link
Miliotis, G., Sengupta, P., Hameed, A., Chuvochina, M., McDonagh, F., Simpson, A.C., Parker, C.W., Singh, N.K., Rekha, P.D., Morris, D. and Raman, K., et al. 2024. Novel spore-forming species exhibiting intrinsic resistance to third-and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. Mbio, 15(4), pp.e00181-24 Link
Simpson, A.C.*, Sengupta, P.*, Zhang, F., Hameed, A., Parker, C.W., Singh, N.K., Miliotis, G., Rekha, P.D., Raman, K., Mason, C.E. and Venkateswaran, K., 2023. Phylogenomics, phenotypic, and functional traits of five novel (Earth-derived) bacterial species isolated from the International Space Station and their prevalence in metagenomes. Scientific Reports, 13 (1), p.19207. Link
Geistlinger, L., Mirzayi, C., Zohra, F., Azhar, R., Elsafoury, S., Grieve, C., Wokaty, J., Gamboa-Tuz, S.D., Sengupta, P., Hecht, I. and Ravikrishnan, A., et al. 2023. BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures. Nature Biotechnology, pp.1-13. Link
Sengupta, P., Sivabalan, S.K.M., Mahesh, A., Palanikumar, I., Kuppa Baskaran, D.K. and Raman, K., 2023. Big Data for a Small World: A Review on Databases and Resources for Studying Microbiomes. Journal of the Indian Institute of Science, pp.1-17. Link
Deb, B.*, Sengupta, P.*, Sambath, J. and Kumar, P., 2020. Bioinformatics analysis of global proteomic and phosphoproteomic data sets revealed activation of NEK2 and AURKA in cancers. Biomolecules, 10(2), p.237. Link
Conferences/ Talks:
Selected Early Career Talk: "Microbial interaction network reveals co-occurrence patterns across built environment microbiomes", Big Data Algorithms in Biology 2024, Indian Institute of Science (IISc), Bangalore, India
Poster: "Exploring microbial adaptation in space using Systems Biology: Enterobacter bugandensis case study", Contemporary Perspectives in Computational Biology 2024, The Institute of Mathematical Sciences (IMSc), Chennai, India
Poster: "Exploring microbial adaptation in space using Systems Biology: Enterobacter bugandensis case study" International Conference on Biodiversity and Geochemistry of Deep and Extreme Earth Systems (ICBGDEES) 2024, Indian Institute of Technology Kharagpur, Kharagpur, India
Poster: "Exploring microbial adaptation in space using Systems Biology: Enterobacter bugandensis case study", Modelling and Tackling Complex Biological Systems 2023, The Institute of Mathematical Sciences (IMSc), Chennai, India
Poster: "Exploring microbial adaptation in space using Systems Biology: Enterobacter bugandensis case study", Big Data Algorithms in Biology 2023, Indian Institute of Science (IISc), Bangalore, India
Poster: "Understanding microbial interactions in spacecraft assembly cleanrooms", Microbial Genomics and Metagenomics Workshop 2023, Joint Genome Institute, Berkeley, USA
Poster: "Prediction of small RNAs in bacteria and deciphering their interactions with proteins", Advances in Computational Biology Conference 2019, La Pedrera, Barcelona, Spain
Pre-prints:
Sengupta, P., Saha, S., Maji, M., & Ghosh, M. (2020). Integrated Bioinformatics Analysis Deciphering the microRNA Regulation in Protein-Protein Interaction Network in Lung Adenocarcinoma. bioRxiv. bioRxiv 2020.08.01.232306; doi: https://doi.org/10.1101/2020.08.01.232306 GoogleScholar biorXiv
Maji, C., Sengupta, P., Batabyal, A., & Chaudhuri, H. (2020). Nonlinear and statistical analysis of ECG signals from arrhythmia-affected cardiac system through the EMD process. arXiv preprint arXiv:2002.03840. GoogleScholar arXiv