Tools Description
Decontaminer Tool
DecontaMiner is a tool for detecting contaminating organisms from unmapped RNASeq
Github : https://github.com/amarinderthind/decontaminer
http://www-labgtp.na.icar.cnr.it/decontaminer
Publication : From trash to treasure: detecting unexpected contamination in unmapped NGS data
CGRphylo
CGRphylo Pipeline: Chaos Game Representation for Phylogeny
https://github.com/amarinderthind/CGRphylo
Publication: Thind Singh Amarinder and Sinha Somdatta*, Using Chaos-Game-Representation for Analysing the SARS-CoV-2 Lineages, Newly Emerging Strains and Recombinants, Current Genomics 2023; 24 (3)
RankerGUI Pipeline
RankerGUI : a web application for comparing and characterising differential expression profiles obtained from the different experiments. http://watson.na.icar.cnr.it/rankergui/
Publication: RankerGUI: A Computational Framework to Compare Differential Gene Expression Profiles Using Rank Based Statistics
