PrePrint:
Tomas Bencomo, Amarinder Thind, Bruce Ashford, Marie Ranson, Carolyn S. Lee Extrachromosomal DNA in cutaneous squamous cell carcinoma is associated with increased nodal disease, Feb 2024, bioRxiv https://doi.org/10.1101/2024.02.04.578845
Hulme, Amy J., Rocio K. Finol-Urdaneta, Jeffrey R. McArthur, Nicholas R. Marzano, Simon Maksour, Amarinder Singh Thind, Yang Guo et al. "Distinct molecular and functional properties of human induced-proprioceptor and low-threshold mechanoreceptor neurons." bioRxiv (2024): 2024-05.
Senior Author:
Pallawi Kumari1, Manmeet Kaur1, Kiran Dindhoria1, Bruce Ashford2, Shanika L. Amarasinghe 3,4, Amarinder S. Thind2,5,* Advances in long-read single-cell transcriptomic (Human Genetics, 2024 (https://link.springer.com/article/10.1007/s00439-024-02678-x )).
Dindhoria, K., Monga, I., & Thind, A. S. Computational approaches and challenges for identification and annotation of non-coding RNAs using RNA-Seq. Functional & Integrative Genomics, (2022). 22(6), 1105-1112.
First Author:
Thind, Amarinder S., and Somdatta Sinha. "Using Chaos-Game-Representation for Analysing the SARS-CoV-2 Lineages, Newly Emerging Strains and Recombinants." Current Genomics 24, no. 3 (2023): 187-195.
Thind, A. S., Ashford, B., Strbenac, D., Mitchell, J., Lee, J., Mueller, S. A., ... & Ranson, M. Whole genome analysis reveals the genomic complexity in metastatic cutaneous squamous cell carcinoma. Frontiers in oncology, (2022). 12, 919118.
Thind, A. S., Kaur, K., & Monga, I. . An Overview of Databases and Tools for lncRNA Genomics Advancing Precision Medicine. Machine Learning and Systems Biology in Genomics and Health, 49-67, springer. (2022)
Thind, A.S., Monga, I., Thakur, P.K., Kumari, P., Dindhoria, K., Krzak, M., Ranson, M. and Ashford, B., Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatics methodology. Briefings in Bioinformatics (2021).
Thind AS, Vitali V, Guarracino MR, Catania F. What's Genetic Variation Got to Do with It? Starvation-Induced SelfFertilization Enhances Survival in Paramecium. Genome Biol Evol. (2020);12(5):626-638. doi:10.1093/gbe/evaa052
Thind AS, Tripathi KP, Guarracino MR. RankerGUI: A Computational Framework to Compare Differential Gene Expression Profiles Using Rank Based Statistics. Int J Mol Sci. 2019;20(23):6098. Published 2019 Dec 3. doi:10.3390/ijms20236098
Co-Author:
Perry JR, Genenger B, Thind AS, Ashford B, Ranson M. PIK Your Poison: The Effects of Combining PI3K and CDK Inhibitors against Metastatic Cutaneous Squamous Cell Carcinoma In Vitro. Cancers. (2024); 16(2):370. https://doi.org/10.3390/cancers16020370
Yeo, N., Genenger, B., Aghmesheh, M., Thind, A., Napaki, S., Perry, J., ... & Brungs, D. Sex as a Predictor of Response to Immunotherapy in Advanced Cutaneous Squamous Cell Carcinoma. Cancers, (2023).15(20), 5026.
Gupta, R., Strbenac, D., Satgunaseelan, L., Cheung, V.K.Y., Narayanappa, H., Ashford, B., Mitchell, J., Thind, A., Palme, C.E., Ch’ng, S. and Low, T.H.H., Comparing Genomic Landscapes of Oral and Cutaneous Squamous Cell Carcinoma of the Head and Neck: Quest for Novel Diagnostic Markers. Modern Pathology, (2023). 36(8), p.100190.
Minaei, E., Mueller, S. A., Ashford, B., Thind, A. S., Mitchell, J., Perry, J. R., ... & Ranson, M. . Cancer Progression Gene Expression Profiling Identifies the Urokinase Plasminogen Activator Receptor as a Biomarker of Metastasis in Cutaneous Squamous Cell Carcinoma. Frontiers in Oncology (2022), 1188.
Perry, J., Ashford, B., Thind, A. S., Gauthier, M. E., Minaei, E., Major, G., ... & Ranson, M. Comprehensive Mutational and Phenotypic Characterization of New Metastatic Cutaneous Squamous Cell Carcinoma Cell Lines Reveal Novel Drug Susceptibilities. International journal of molecular sciences, (2020). 21(24), 9536.
Sangiovanni M, Granata I, Thind AS, Guarracino MR. From trash to treasure: detecting unexpected contamination in unmapped NGS data. BMC Bioinformatics. 2019;20(Suppl 4):168. Published (2019) Apr 18. doi:10.1186/s12859- 019-2684-x
Balasco N, Esposito L, Thind AS, Guarracino MR, Vitagliano L. Dissection of Factors Affecting the Variability of the Peptide Bond Geometry and Planarity. Biomed Res Int. (2017) ;2017:2617629. doi:10.1155/2017/2617629