Antibiotic resistance describes the resistance of bacteria to antibiotics, which are the medicines we use to clear bacterial infections. When someone is sick with an antibiotic resistant infection, it does not respond to antibiotic treatment and can be a large health risk.
You may also hear the term antimicrobial resistance. Similarly, this is when microbes are resistant to antimicrobials, the medicines we use to treat microbial infections. Microbes refer to bacteria, viruses, fungi, and parasites.
But when we talk about antibiotic resistance, it is specific to bacteria. Antibiotics treat bacterial infections specifically, and are not used for other types of microbes, such as viruses.
When antibiotics are overused or disposed of improperly, it increases the amount of antibiotic contamination in the environment.
In agriculture, to prevent animal sickness, antibiotics are used, and often subsequently end up in the environment, often in soil and water.
Another way antibiotics get into the environment is through medical waste and human waste.
Antibiotic overuse can lead to antibiotics in our environment, from agriculture, human waste, medical waste, or other sources. More exposure of bacteria to antibiotics leads to more resistance in bacteria.
Antibiotics in the environment creates a pressure for bacteria. The bacteria that are resistant to the antibiotics survive and the non-resistant bacteria die off. The resistant bacteria that survive replicate and pass on their resistance genes.
Antibiotic resistance genes are the genes encoded in bacteria's DNA that make them resistant to antibiotics. Antibiotic resistant genes can also pass between different bacteria species through horizontal gene transfer.
How antibiotic resistance spreads (BBC)
Environmental surveillance is important for monitoring the spread of antibiotic resistance genes and identifying new genes when they arise. It uses measurements of antibiotic resistance in soil and water to determine where there might be hotspots of antibiotic resistance.
When you participate in Soil-Seq, you are participating in environmental surveillance! We test soil samples to measure the spread of antibiotic resistance.
Soil Sampling (Wikimedia Commons)