Papers

Aneuploidy in aDNA Comms Biol, 2024

Sarmatian in Britain Curr Biol, 2024

Prehistoric plague Nature Comm, 2023

Farming adaptations

Curr Biol, 2023

Ice Age wolf ancestors Nature, 2022

Ice Age Britain

Nat Ecol Evol, 2022

Sediment genomes

Curr Biol, 2021

Homo sapiens origins

Nature, 2021

Dog history

Science, 2020

2024

K Anastasiadou, M Silva, T Booth, L Speidel, T Audsley, C Barrington, J Buckberry, D Fernandes, B Ford, M Gibson, A Gilardet, I Glocke, K Keefe, M Kelly, M Masters, J McCabe, L McIntyre, P Ponce, S Rowland, J Ruiz Ventura, P Swali, F Tait, D Walker, H Webb, M Williams, A Witkin, M Holst, L Loe, I Armit, R Schulting, P Skoglund (2024) Detection of chromosomal aneuploidy in ancient genomes, Communications Biology, 7:14

M Silva, T Booth, J Moore, K Anastasiadou, D Walker, A Gilardet, C Barrington, M Kelly, M Williams, M Henderson, A Smith, D Bowsher, J Montgomery, P Skoglund (2024) An individual with Sarmatian-related ancestry in Roman Britain. Current Biology, 34:1-9

2023

P Swali, R Schulting, A Gilardet, M Kelly, K Anastasiadou, I Glocke, J McCabe, M Williams, T Audsley, L Loe, T Fernández-Crespo, J Ordoño, D Walker, T Clare, G Cook, I Hodkinson, M Simpson, S Read, T Davy, M Silva, M Hajdinjak, A Bergström, T Booth, P Skoglund (2023) Yersinia pestis genomes reveal plague in Britain 4,000 years ago, Nature Communications, DOI:10.1038/s41467-023-38393-w

T Davy, D Ju, I Mathieson$, P Skoglund$ (2023) Hunter-gatherer admixture facilitated natural selection in Neolithic European farmers, Current Biology, 33(7):1365-1371.e3

AR Barton, CG Santander, P Skoglund, I Moltke, D Reich, I Mathieson (2023) Insufficient evidence for natural selection associated with the Black Death, bioRxiv preprint

R Rodríguez-Varela, KHS Moore, S Ebenesersdóttir, G Merve-Kilinc, A Kjellström, L Papmehl-Dufay, C Alfsdotter, B Berglund, L Alrawi, N Kashuba, V Sobrado, V Kempe Lagerholm, E Gilbert, GL Cavalleri, E Hovig, I Kockum, T Olsson, L Alfredsson, TF Hansen, T Werge, AR Munters. C Bernhardsson, B Skar, A Christophersen, G Turner-Walker, S Gopalakrishnan, E Daskalaki, A Omrak, P Pérez-Ramallo, P Skoglund, L Girdland-Flink, F Gunnarsson, C Hedenstierna-Jonson, MTP Gilbert, K Lidén, M Jakobsson, L Einarsson, H Victor, M Krzewińska, T Zachrisson, J Storå, K Stefánsson, A Helgason, A Götherström (2023) The genetic history of Scandinavia from the Roman Iron Age to the present, Cell, 186(1):32-46.e19

2022

S Charlton* , S Brace*, M Hajdinjak*, R Kearney, T Booth, H Reade, JA Tripp, KL Sayle, SB Grimm, SM Bello, EA Walker, A Gilardet, P East, I Glocke, G Larson, T Higham, C Stringer, P Skoglund$, I Barnes$, RE Stevens$ (2022) Dual ancestries and ecologies of the Late Glacial Palaeolithic in Britain, Nature Ecology & Evolution, DOI: 10.1038/s41559-022-01883-z

A Bergström*, DWG Stanton*, UH Taron*, L Frantz, MHS Sinding, E Ersmark, S Pfrengle, M Cassatt-Johnstone, O Lebrasseur, L Girdland-Flink, DM Fernandes, M Ollivier, L Speidel, S Gopalakrishnan, MV Westbury, J Ramos-Madrigal, TR Feuerborn, E Reiter, J Gretzinger, SC. Münzel, P Swali, N Conard, C Carøe, J Haile, A Linderholm, S Androsov, I Barnes, C Baumann, N Benecke, H Bocherens, S Brace, RF Carden, DG Drucker, S Fedorov, M Gasparik, M Germonpré, S Grigoriev, P Groves, ST Hertwig, VV Ivanova, L Janssens, RP Jennings, AK Kasparov, IV Kirrilova, I Kurmaniyazov, YV Kuzmin, PA Kosintsev, M Lázničková-Galetová, C Leduc, P Nikolskiy, M Nussbaumer, C O'Drisceoil, L Orlando, A Outram, EY. Pavlova, AR Perri, M Pilot, VV Pitulko, V Plotnikov, A Protopopov, A Rehazek, M Sablin, A Seguin-Orlando, J Storå, C Verjux, VF Zaibert, G Zazula, P Crombé, A Hansen, E Willerslev, JA Leonard, A Götherström, R Pinhasi, VJ Schuenemann, M Hofreiter, MTP Gilbert, B Shapiro, G Larson, J Krause, L Dalén, P Skoglund (2022) Gray wolf genomic history reveals a dual ancestry of dogs, Nature, 607:313–320 [PDF]

A Bergström, P Skoglund (2022) Ice Age wolf genomes home in on dog origins, Nature, DOI:10.1038/d41586-022-01551-z

2021

A Picin, S Benazzi, R Blasco, M Hajdinjak, KM Helgen, J-J Hublin, J Rosell, P Skoglund, C Stringer, S Talamo (2021) Comment on “A global environmental crisis 42,000 years ago”, Science, 374:6570

S Alpaslan-Roodenberg, D Anthony, H Babiker, E Bánffy, T Booth, P Capone, A Deshpande-Mukherjee, S Eisenmann, L Fehren-Schmitz, M Frachetti, R Fujita, CJ Frieman, Q Fu, V Gibbon, W Haak, M Hajdinjak, KP Hofmann, B Holguin, T Inomata, H Kanzawa-Kiriyama, W Keegan, J Kelso, J Krause, G Kumaresan, C Kusimba, S Kusimba, C Lalueza-Fox, B Llamas, S MacEachern, S Mallick, H Matsumura, AY Morales-Arce, G M Matuzeviciute, V Mushrif-Tripathy, N Nakatsuka, R Nores, C Ogola, M Okumura, N Patterson, R Pinhasi, SPR Prasad, ME Prendergast, JL Punzo, D Reich, R Sawafuji, E Sawchuk, S Schiffels, J Sedig, S Shnaider, K Sirak, P Skoglund, V Slon, M Snow, M Soressi, M Spriggs, PW Stockhammer, A Szécsényi-Nagy, K Thangaraj, V Tiesler, R Tobler, CC Wang, C Warinner, S Yasawardene, M Zahir (2021) Ethics of DNA research on human remains: five globally applicable guidelines, Nature,  DOI: 10.1038/s41586-021-04008-x

L Speidel, L Cassidy, RW Davies, G Hellenthal, P Skoglund, S Myers (2021) Inferring population histories for ancient genomes using genome-wide genealogies, Molecular Biology and Evolution, 38(9)3497–3511

P Gelabert*, S Sawyer*, A Bergström*, T C Collin, T Meshvelian, A Belfer-Cohen, D Lordkipanidze, N Jakeli, Z Matskevich, G Bar-Oz, DM Fernandes, O Cheronet, KT Ozdogan, V Oberreiter, RNM Feeney, P Skoglund§, R Pinhasi§ (2021) Genome-scale sequencing and analysis of human, wolf and bison DNA from 25,000 year-old sediment, Current Biology, 31:1-11

J Von Seth, N Dussex, D Díez-del-Molino, T Van Der Valk, VE Kutschera, M Kierczak, CC Steiner, S Liu, MTP Gilbert, M-HS Sinding, S Prost, K Guschanski, SKSS Nathan, S Brace, YL Chan, CW Wheat, Pontus Skoglund, OA Ryder, B Goossens, A Götherström, L Dalén (2021) Genomic insights into the conservation status of the world’s last remaining Sumatran rhinoceros populations, Nature Communications, 12(1):1-11

M Hajdinjak, F Mafessoni, L Skov, B Vernot, A Hübner, Q Fu, E Essel, S Nagel, B Nickel, J Richter, O Teodora Moldovan, S Constantin, E Endarova, N Zahariev, R Spasov, F Welker, GM Smith, V Sinet-Mathiot, L Paskulin, H Fewlass, S Talamo, Z Rezek, S Sirakova, N Sirakov, SP McPherron, T Tsanova, J-J Hublin, BM Peter, M Meyer, P Skoglund, J Kelso, S Pääbo (2021) Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry, Nature, 592:253–257

T van der Valk*, P Pečnerová*, D Díez-del-Molino*, A Bergström, J Oppenheimer, S Hartmann, G Xenikoudakis, JA Thomas, M Dehasque, E Sağlıcan, F Rabia Fidan, I Barnes, S Liu, M Somel, PD Heintzman, P Nikolskiy, B Shapiro, P Skoglund, M Hofreiter, AM Lister, A Götherström§, L Dalén§ (2021) Million-year-old DNA sheds light on the genomic history of mammoths, Nature, https://doi.org/10.1038/s41586-021-03224-9

A Bergström, C Stringer, M Hajdinjak, E Scerri, P Skoglund (2021) Origins of modern human ancestry, Nature, 590:229–237

L Orlando, R Allaby, P Skoglund, C Der Sarkissian, PW Stockhammer, MC Ávila-Arcos, Q Fu, J Krause, E Willerslev, AC Stone, C Warinner (2021) Ancient DNA analysis. Nature Reviews Methods Primers, 1:14  [PDF]

2020

A Bergström, L Frantz, R Schmidt, E Ersmark, O Lebrasseur, L Girdland-Flink, AT Lin, J Storå, K-G Sjögren, D Anthony, E Antipina, S Amiri, G Bar-Oz, VI Bazaliiskii, J Bulatovic, D Brown, A Carmagnini, T Davy, S Fedorov, I Fiore, D Fulton, M Germonpré, J Haile, EK Irving-Pease, A Jamieson, L Janssens, I Kirillova, L Kolska Horwitz, J Kuzmanovic-Cvetkovic, Y Kuzmin, RJ Losey, D Ložnjak Dizdar, M Mashkour, M Novak, V Onar, D Orton, M Pasaric, M Radivojevic, D Rajkovic, B Roberts, H Ryan, M Sablin, F Shidlovskiy, I Stojanovic, A Tagliacozzo, K Trantalidou, I Ullén, A Villaluenga, P Wapnish, K Dobney, A Götherström, A Linderholm, L Dalén, R Pinhasi, G Larson, P Skoglund (2020) Origins and genetic legacy of prehistoric dogs, Science, 370(6516):557-564 [PDF] [Supplementary Material] [Data]

DWG Stanton, F Alberti, V Plotnikov, S Androsov, S Grigoriev, S Fedorov, P Kosintsev, D Nagel, S Vartanyan, I Barnes, R Barnett, E Ersmark, D Döppes, M Germonpré, M Hofreiter, W Rosendahl, P Skoglund, L Dalén (2020) Early Pleistocene origin and extensive intra-species diversity of the extinct cave lion, Scientific Reports, 10:12621

MS Sinding, S Gopalakrishnan, J Ramos-Madrigal, M de Manuel, VV Pitulko, L Kuderna, TR Feuerborn, LAF Frantz, FG Vieira, J Niemann, JA Samaniego Castruita, C Carøe, EU Andersen-Ranberg, PD Jordan, EY Pavlova, PA Nikolskiy, AK Kasparov, VV Ivanova, E Willerslev, P Skoglund, M Fredholm, SE Wennerberg, MP Heide-Jørgensen, R Dietz, C Sonne, M Meldgaard, L Dalén, G Larson, B Petersen, T Sicheritz-Pontén, L Bachmann, Ø Wiig, T Marques-Bonet, AJ Hansen, MTP Gilbert (2020) Arctic-adapted dogs emerged at the Pleistocene–Holocene transition, Science, 368(6498):1495-1499

F Mafessoni, S Grote, C de Filippo, V Slon, KA Kolobova, B Viola, S Markin, M Chintalapati, S Peyrégne, L Skov, P Skoglund, AI Krivoshapkin, AP Derevianko, M Meyer, J Kelso, B Peter, K Prüfer, S Pääbo (2020) A high-coverage Neandertal genome from Chagyrskaya Cave, PNAS, 117(26):15132-15136

N Nakatsuka, I Lazaridis, C Barbieri, P Skoglund, N Rohland, S Mallick, C Posth, K Harkins-Kinkaid, M Ferry, É Harney, M Michel, K Stewardson, J Novak-Forst, JM Capriles, M Alfonso Durruty, K Aranda Álvarez, D Beresford-Jones, R Burger, L Cadwallader, R Fujita, J Isla, G Lau, C Lémuz Aguirre, S LeBlanc, SC Maldonado, F Meddens, PG Messineo, BJ Culleton, TK Harper, J Quilter, G Politis, K Rademaker, M Reindel, M Rivera, L Salazar, JR Sandoval, CM Santoro, N Scheifler, V Standen, MI Barreto, I Flores Espinoza, E Tomasto-Cagigao, G Valverde, DJ Kennett, A Cooper, J Krause, W Haak, B Llamas, D Reich, L Fehren-Schmitz (2020) A Paleogenomic Reconstruction of the Deep Population History of the Andes, Cell, 181(5):1131-1145

A Bergström, SA McCarthy, R Hui, MA Almarri, Q Ayub, P Danecek, Y Chen, S Felkel, P Hallast, J Kamm, H Blanché, J-F Deleuze, H Cann, S Mallick, D Reich, MS Sandhu, P Skoglund, A Scally, Y Xue, R Durbin, C Tyler-Smith (2020) Insights into human genetic variation and population history from 929 diverse genomes, Science, 367(6484):eaay5012 [PDF]

I Mathieson, F Abascal, L Vinner, P Skoglund, C Pomilla, P Mitchell, C Arthur, D Gurdasani, E Willerslev, MS Sandhu, G Dewar (2020) An ancient baboon genome demonstrates long-term population continuity in southern Africa. Genome Biology and Evolution, evaa019

2019

G-D Wang, M Zhang, X Wang, MA Yang, P Cao, F Liu, H Lu, X Feng, P Skoglund, L Wang, Q Fu, Y-P Zhang (2019) Genomic Approaches Reveal an Endemic Subpopulation of Gray Wolves in Southern China, iScience, 20:110-118

M Pilot, AE Moura, IM Okhlopkov, NV Mamaev, AN Alagaili, OB Mohammed, EG Yavruyan, NH Manaseryan, VHayrapetyan, N Kopaliani, E Tsingarska, M Krofel, P Skoglund, W Bogdanowicz (2019) Global Phylogeographic and Admixture Patterns in Grey Wolves and Genetic Legacy of An Ancient Siberian Lineage, Scientific Reports, 9(1):1-13

P Flegontov, NE Altınışık, P Changmai, N Rohland, S Mallick, N Adamski, DA Bolnick, N Broomandkhoshbacht, F Candilio, BJ Culleton, O Flegontova, TM Friesen, C Jeong, TK Harper, D Keating, DJ Kennett, AM Kim, TC Lamnidis, AM Lawson, I Olalde, J Oppenheimer, BA Potter, J Raff, RA Sattler, P Skoglund, K Stewardson, EJ Vajda, S Vasilyev, E Veselovskaya, MG Hayes, DH O’Rourke, J Krause, R Pinhasi, D Reich, S Schiffels (2019) Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America, Nature, 570:236–240, [PDF]

M Spriggs, F Valentin, S Bedford, R Pinhasi, P Skoglund, D Reich, M Lipson (2019) Revisiting ancient DNA insights into the human history of the Pacific Islands, Archaeology in Oceania, DOI: 10.1002/arco.5180 

2018

C Posth*, N Nakatsuka*, I Lazaridis, P Skoglund,  S Mallick, TC Lamnidis, N Rohland, K Nägele, N Adamski, E Bertolini, N Broomandkhoshbacht, A Cooper, BJ Culleton, T Ferraz, M Ferry, A Furtwängler, W Haak, K Harkins, TK Harper, T Hünemeier, AM Lawson, B Llamas, M Michel, E Nelson, J Oppenheimer, N Patterson, S Schiffels, J Sedig,  K Stewardson, S Talamo, C-C Wang, J-J Hublin, M Hubbe, K Harvati, A Nuevo Delaunay, J Beier, M Francken, P Kaulicke, H Reyes-Centeno, K Rademaker, WR Trask, M Robinson, SM Gutierrez, KM Prufer, DC Salazar-Garcia, E Nunes Chim, L Müller Plumm Gomes, M Lopes Alves, A Liryo, M Inglez, R Elias Oliveira, DV Bernardo, A Barioni, V Wesolowski, NA Scheifler, MA Rivera, CR Plens, PG Messineo, L Figuti, D Corach, C Scabuzzo, S Eggers, P DeBlasis, M Reindel, C Méndez, G Politis, E Tomasto-Cagigao, DJ Kennett, A Strauss, L Fehren-Schmitz, J Krause, D Reich (2018) Reconstructing the Deep Population History of Central and South America, Cell, 175(5):1185-1197.e22

K Tambets, B Yunusbayev, G Hudjashov, A-M Ilumäe, S Rootsi, T Honkola, O Vesakoski, Q Atkinson, P Skoglund, A Kushniarevich, S Litvinov, M Reidla, E Metspalu, L Saag, T Rantanen, M Karmin, J Parik, SI Zhadanov, M Gubina, LD Damba, M Bermisheva, T Reisberg, K Dibirova, I Evseeva, M Nelis, J Klovins, A Metspalu, T Esko, O Balanovsky, E Balanovska, EK Khusnutdinova, LP Osipova, M Voevoda, R Villems, T Kivisild, M Metspalu (2018) Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations, Genome Biology 19:139

P Skoglund, I Mathieson (2018), Ancient human genomics: the first decade. Annual Review of Genomics and Human Genetics, 19:8.1–8.24, [PDF]

P Skoglund, S Mallick, N Patterson, D Reich (2018) No evidence for unknown archaic ancestry in South Asia. Nature Genetics, 50:632–633

M Hajdinjak, Q Fu, A Hübner, M Petr, F Mafessoni, S Grote, P Skoglund, V Narasimham, H Rougier, I Crevecoeur, P Semal, M Soressi, S Talamo, J-J Hublin, I Gušić, Ž Kućan, P Rudan, LV Golovanova, VB Doronichev, C Posth, J Krause, P Korlević, S Nagel, B Nickel, M Slatkin, N Patterson,  D Reich, K Prüfer, M Meyer, S Pääbo§, J Kelso§ (2018) Reconstructing the genetic history of late Neanderthals, Nature, 555, 652–656

P Skoglund (2018) Northwest Passage to Scandinavia, Nature Ecology & Evolution, 2:593–594 [PDF]

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Pontus' full publication list including prior to founding the lab: https://scholar.google.com/citations?user=KJcADbYAAAAJ&hl=en 

*These authors contributed equally/co-first authors

§These authors contributed equally/co-senior authors