Papers

Ice Age wolf ancestors Nature, 2022

Farming adaptations

BioRxiv, 2022

Bronze Age plague BioRxiv, 2022

First Europeans

Nature, 2021

Human origins

Nature, 2021

Dog history

Science, 2020

2022

T Davy, D Ju, I Mathieson*, P Skoglund* (2022) Hunter-gatherer admixture facilitated natural selection in Neolithic European farmers, bioRxiv DOI: 10.1101/2022.09.05.506481

A Bergström*, DWG Stanton*, UH Taron*, L Frantz, MHS Sinding, E Ersmark, S Pfrengle, M Cassatt-Johnstone, O Lebrasseur, L Girdland-Flink, DM Fernandes, M Ollivier, L Speidel, S Gopalakrishnan, MV Westbury, J Ramos-Madrigal, TR Feuerborn, E Reiter, J Gretzinger, SC. Münzel, P Swali, N Conard, C Carøe, J Haile, A Linderholm, S Androsov, I Barnes, C Baumann, N Benecke, H Bocherens, S Brace, RF Carden, DG Drucker, S Fedorov, M Gasparik, M Germonpré, S Grigoriev, P Groves, ST Hertwig, VV Ivanova, L Janssens, RP Jennings, AK Kasparov, IV Kirrilova, I Kurmaniyazov, YV Kuzmin, PA Kosintsev, M Lázničková-Galetová, C Leduc, P Nikolskiy, M Nussbaumer, C O'Drisceoil, L Orlando, A Outram, EY. Pavlova, AR Perri, M Pilot, VV Pitulko, V Plotnikov, A Protopopov, A Rehazek, M Sablin, A Seguin-Orlando, J Storå, C Verjux, VF Zaibert, G Zazula, P Crombé, A Hansen, E Willerslev, JA Leonard, A Götherström, R Pinhasi, VJ Schuenemann, M Hofreiter, MTP Gilbert, B Shapiro, G Larson, J Krause, L Dalén, P Skoglund (2022) Gray wolf genomic history reveals a dual ancestry of dogs, Nature, 607:313–320 [PDF]

P Swali, R Schulting, A Gilardet, M Kelly, K Anastasiadou, I Glocke, T Audsley, L Loe, T Fernandez-Crespo, J Ordono, D Walker, T Davy, M Silva, M Hajdinjak, A Bergstrom, T Booth, P Skoglund (2022) Yersinia pestis genomes reveal plague in Britain 4,000 years ago, bioRxiv, DOI: 10.1101/2022.01.26.477195

2021

A Picin, S Benazzi, R Blasco, M Hajdinjak, KM Helgen, J-J Hublin, J Rosell, P Skoglund, C Stringer, S Talamo (2021) Comment on “A global environmental crisis 42,000 years ago”, Science, 374:6570

S Alpaslan-Roodenberg, D Anthony, H Babiker, E Bánffy, T Booth, P Capone, A Deshpande-Mukherjee, S Eisenmann, L Fehren-Schmitz, M Frachetti, R Fujita, CJ Frieman, Q Fu, V Gibbon, W Haak, M Hajdinjak, KP Hofmann, B Holguin, T Inomata, H Kanzawa-Kiriyama, W Keegan, J Kelso, J Krause, G Kumaresan, C Kusimba, S Kusimba, C Lalueza-Fox, B Llamas, S MacEachern, S Mallick, H Matsumura, AY Morales-Arce, G M Matuzeviciute, V Mushrif-Tripathy, N Nakatsuka, R Nores, C Ogola, M Okumura, N Patterson, R Pinhasi, SPR Prasad, ME Prendergast, JL Punzo, D Reich, R Sawafuji, E Sawchuk, S Schiffels, J Sedig, S Shnaider, K Sirak, P Skoglund, V Slon, M Snow, M Soressi, M Spriggs, PW Stockhammer, A Szécsényi-Nagy, K Thangaraj, V Tiesler, R Tobler, CC Wang, C Warinner, S Yasawardene, M Zahir (2021) Ethics of DNA research on human remains: five globally applicable guidelines, Nature, DOI: 10.1038/s41586-021-04008-x

L Speidel, L Cassidy, RW Davies, G Hellenthal, P Skoglund, S Myers (2021) Inferring population histories for ancient genomes using genome-wide genealogies, Molecular Biology and Evolution, 38(9)3497–3511

P Gelabert*, S Sawyer*, A Bergström*, T C Collin, T Meshvelian, A Belfer-Cohen, D Lordkipanidze, N Jakeli, Z Matskevich, G Bar-Oz, DM Fernandes, O Cheronet, KT Ozdogan, V Oberreiter, RNM Feeney, P Skoglund§, R Pinhasi§ (2021) Genome-scale sequencing and analysis of human, wolf and bison DNA from 25,000 year-old sediment, Current Biology, 31:1-11

J Von Seth, N Dussex, D Díez-del-Molino, T Van Der Valk, VE Kutschera, M Kierczak, CC Steiner, S Liu, MTP Gilbert, M-HS Sinding, S Prost, K Guschanski, SKSS Nathan, S Brace, YL Chan, CW Wheat, Pontus Skoglund, OA Ryder, B Goossens, A Götherström, L Dalén (2021) Genomic insights into the conservation status of the world’s last remaining Sumatran rhinoceros populations, Nature Communications, 12(1):1-11

M Hajdinjak, F Mafessoni, L Skov, B Vernot, A Hübner, Q Fu, E Essel, S Nagel, B Nickel, J Richter, O Teodora Moldovan, S Constantin, E Endarova, N Zahariev, R Spasov, F Welker, GM Smith, V Sinet-Mathiot, L Paskulin, H Fewlass, S Talamo, Z Rezek, S Sirakova, N Sirakov, SP McPherron, T Tsanova, J-J Hublin, BM Peter, M Meyer, P Skoglund, J Kelso, S Pääbo (2021) Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry, Nature, 592:253–257

T van der Valk*, P Pečnerová*, D Díez-del-Molino*, A Bergström, J Oppenheimer, S Hartmann, G Xenikoudakis, JA Thomas, M Dehasque, E Sağlıcan, F Rabia Fidan, I Barnes, S Liu, M Somel, PD Heintzman, P Nikolskiy, B Shapiro, P Skoglund, M Hofreiter, AM Lister, A Götherström§, L Dalén§ (2021) Million-year-old DNA sheds light on the genomic history of mammoths, Nature, https://doi.org/10.1038/s41586-021-03224-9

A Bergström, C Stringer, M Hajdinjak, E Scerri, P Skoglund (2021) Origins of modern human ancestry, Nature, 590:229–237

L Orlando, R Allaby, P Skoglund, C Der Sarkissian, PW Stockhammer, MC Ávila-Arcos, Q Fu, J Krause, E Willerslev, AC Stone, C Warinner (2021) Ancient DNA analysis. Nature Reviews Methods Primers, 1:14 [PDF]

2020

A Bergström, L Frantz, R Schmidt, E Ersmark, O Lebrasseur, L Girdland-Flink, AT Lin, J Storå, K-G Sjögren, D Anthony, E Antipina, S Amiri, G Bar-Oz, VI Bazaliiskii, J Bulatovic, D Brown, A Carmagnini, T Davy, S Fedorov, I Fiore, D Fulton, M Germonpré, J Haile, EK Irving-Pease, A Jamieson, L Janssens, I Kirillova, L Kolska Horwitz, J Kuzmanovic-Cvetkovic, Y Kuzmin, RJ Losey, D Ložnjak Dizdar, M Mashkour, M Novak, V Onar, D Orton, M Pasaric, M Radivojevic, D Rajkovic, B Roberts, H Ryan, M Sablin, F Shidlovskiy, I Stojanovic, A Tagliacozzo, K Trantalidou, I Ullén, A Villaluenga, P Wapnish, K Dobney, A Götherström, A Linderholm, L Dalén, R Pinhasi, G Larson, P Skoglund (2020) Origins and genetic legacy of prehistoric dogs, Science, 370(6516):557-564 [PDF] [Supplementary Material] [Data]

DWG Stanton, F Alberti, V Plotnikov, S Androsov, S Grigoriev, S Fedorov, P Kosintsev, D Nagel, S Vartanyan, I Barnes, R Barnett, E Ersmark, D Döppes, M Germonpré, M Hofreiter, W Rosendahl, P Skoglund, L Dalén (2020) Early Pleistocene origin and extensive intra-species diversity of the extinct cave lion, Scientific Reports, 10:12621

MS Sinding, S Gopalakrishnan, J Ramos-Madrigal, M de Manuel, VV Pitulko, L Kuderna, TR Feuerborn, LAF Frantz, FG Vieira, J Niemann, JA Samaniego Castruita, C Carøe, EU Andersen-Ranberg, PD Jordan, EY Pavlova, PA Nikolskiy, AK Kasparov, VV Ivanova, E Willerslev, P Skoglund, M Fredholm, SE Wennerberg, MP Heide-Jørgensen, R Dietz, C Sonne, M Meldgaard, L Dalén, G Larson, B Petersen, T Sicheritz-Pontén, L Bachmann, Ø Wiig, T Marques-Bonet, AJ Hansen, MTP Gilbert (2020) Arctic-adapted dogs emerged at the Pleistocene–Holocene transition, Science, 368(6498):1495-1499

F Mafessoni, S Grote, C de Filippo, V Slon, KA Kolobova, B Viola, S Markin, M Chintalapati, S Peyrégne, L Skov, P Skoglund, AI Krivoshapkin, AP Derevianko, M Meyer, J Kelso, B Peter, K Prüfer, S Pääbo (2020) A high-coverage Neandertal genome from Chagyrskaya Cave, PNAS, 117(26):15132-15136

N Nakatsuka, I Lazaridis, C Barbieri, P Skoglund, N Rohland, S Mallick, C Posth, K Harkins-Kinkaid, M Ferry, É Harney, M Michel, K Stewardson, J Novak-Forst, JM Capriles, M Alfonso Durruty, K Aranda Álvarez, D Beresford-Jones, R Burger, L Cadwallader, R Fujita, J Isla, G Lau, C Lémuz Aguirre, S LeBlanc, SC Maldonado, F Meddens, PG Messineo, BJ Culleton, TK Harper, J Quilter, G Politis, K Rademaker, M Reindel, M Rivera, L Salazar, JR Sandoval, CM Santoro, N Scheifler, V Standen, MI Barreto, I Flores Espinoza, E Tomasto-Cagigao, G Valverde, DJ Kennett, A Cooper, J Krause, W Haak, B Llamas, D Reich, L Fehren-Schmitz (2020) A Paleogenomic Reconstruction of the Deep Population History of the Andes, Cell, 181(5):1131-1145

A Bergström, SA McCarthy, R Hui, MA Almarri, Q Ayub, P Danecek, Y Chen, S Felkel, P Hallast, J Kamm, H Blanché, J-F Deleuze, H Cann, S Mallick, D Reich, MS Sandhu, P Skoglund, A Scally, Y Xue, R Durbin, C Tyler-Smith (2020) Insights into human genetic variation and population history from 929 diverse genomes, Science, 367(6484):eaay5012 [PDF]

I Mathieson, F Abascal, L Vinner, P Skoglund, C Pomilla, P Mitchell, C Arthur, D Gurdasani, E Willerslev, MS Sandhu, G Dewar (2020) An ancient baboon genome demonstrates long-term population continuity in southern Africa. Genome Biology and Evolution, evaa019

2019

G-D Wang, M Zhang, X Wang, MA Yang, P Cao, F Liu, H Lu, X Feng, P Skoglund, L Wang, Q Fu, Y-P Zhang (2019) Genomic Approaches Reveal an Endemic Subpopulation of Gray Wolves in Southern China, iScience, 20:110-118

M Pilot, AE Moura, IM Okhlopkov, NV Mamaev, AN Alagaili, OB Mohammed, EG Yavruyan, NH Manaseryan, VHayrapetyan, N Kopaliani, E Tsingarska, M Krofel, P Skoglund, W Bogdanowicz (2019) Global Phylogeographic and Admixture Patterns in Grey Wolves and Genetic Legacy of An Ancient Siberian Lineage, Scientific Reports, 9(1):1-13

P Flegontov, NE Altınışık, P Changmai, N Rohland, S Mallick, N Adamski, DA Bolnick, N Broomandkhoshbacht, F Candilio, BJ Culleton, O Flegontova, TM Friesen, C Jeong, TK Harper, D Keating, DJ Kennett, AM Kim, TC Lamnidis, AM Lawson, I Olalde, J Oppenheimer, BA Potter, J Raff, RA Sattler, P Skoglund, K Stewardson, EJ Vajda, S Vasilyev, E Veselovskaya, MG Hayes, DH O’Rourke, J Krause, R Pinhasi, D Reich, S Schiffels (2019) Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America, Nature, 570:236–240, [PDF]

M Spriggs, F Valentin, S Bedford, R Pinhasi, P Skoglund, D Reich, M Lipson (2019) Revisiting ancient DNA insights into the human history of the Pacific Islands, Archaeology in Oceania, DOI: 10.1002/arco.5180

2018

C Posth*, N Nakatsuka*, I Lazaridis, P Skoglund, S Mallick, TC Lamnidis, N Rohland, K Nägele, N Adamski, E Bertolini, N Broomandkhoshbacht, A Cooper, BJ Culleton, T Ferraz, M Ferry, A Furtwängler, W Haak, K Harkins, TK Harper, T Hünemeier, AM Lawson, B Llamas, M Michel, E Nelson, J Oppenheimer, N Patterson, S Schiffels, J Sedig, K Stewardson, S Talamo, C-C Wang, J-J Hublin, M Hubbe, K Harvati, A Nuevo Delaunay, J Beier, M Francken, P Kaulicke, H Reyes-Centeno, K Rademaker, WR Trask, M Robinson, SM Gutierrez, KM Prufer, DC Salazar-Garcia, E Nunes Chim, L Müller Plumm Gomes, M Lopes Alves, A Liryo, M Inglez, R Elias Oliveira, DV Bernardo, A Barioni, V Wesolowski, NA Scheifler, MA Rivera, CR Plens, PG Messineo, L Figuti, D Corach, C Scabuzzo, S Eggers, P DeBlasis, M Reindel, C Méndez, G Politis, E Tomasto-Cagigao, DJ Kennett, A Strauss, L Fehren-Schmitz, J Krause, D Reich (2018) Reconstructing the Deep Population History of Central and South America, Cell, 175(5):1185-1197.e22

K Tambets, B Yunusbayev, G Hudjashov, A-M Ilumäe, S Rootsi, T Honkola, O Vesakoski, Q Atkinson, P Skoglund, A Kushniarevich, S Litvinov, M Reidla, E Metspalu, L Saag, T Rantanen, M Karmin, J Parik, SI Zhadanov, M Gubina, LD Damba, M Bermisheva, T Reisberg, K Dibirova, I Evseeva, M Nelis, J Klovins, A Metspalu, T Esko, O Balanovsky, E Balanovska, EK Khusnutdinova, LP Osipova, M Voevoda, R Villems, T Kivisild, M Metspalu (2018) Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations, Genome Biology 19:139

P Skoglund, I Mathieson (2018), Ancient human genomics: the first decade. Annual Review of Genomics and Human Genetics, 19:8.1–8.24, [PDF]

P Skoglund, S Mallick, N Patterson, D Reich (2018) No evidence for unknown archaic ancestry in South Asia. Nature Genetics, 50:632–633

M Hajdinjak, Q Fu, A Hübner, M Petr, F Mafessoni, S Grote, P Skoglund, V Narasimham, H Rougier, I Crevecoeur, P Semal, M Soressi, S Talamo, J-J Hublin, I Gušić, Ž Kućan, P Rudan, LV Golovanova, VB Doronichev, C Posth, J Krause, P Korlević, S Nagel, B Nickel, M Slatkin, N Patterson, D Reich, K Prüfer, M Meyer, S Pääbo§, J Kelso§ (2018) Reconstructing the genetic history of late Neanderthals, Nature, 555, 652–656

O Loreille, S Ratnayake, AL Bazinet, TB Stockwell, DD Sommer,N Rohland, S Mallick, P LF Johnson, P Skoglund, AJ Onorato, NH Bergman, D Reich, JA Irwin (2018) Biological sexing of a 4000-year-old Egyptian mummy head to assess the potential of nuclear DNA recovery from the most damaged and limited forensic specimens, Genes, 9(3), 135

M Lipson*, P Skoglund*, M Spriggs, F Valentin, S Bedford, R Shing, H Buckley, I Phillip, GK Ward, S Mallick, N Rohland, N Broomandkhoshbacht, O Cheronet, M Ferry, TK Harper, M Michel, J Oppenheimer, K Sirak, K Stewardson, K Auckland, AVS Hill, K Maitland, SJ Oppenheimer, T Parks, K Robson, TN Williams, DJ Kennett, AJ Mentzer, R Pinhasi, D Reich (2018) Population Turnover in Remote Oceania Shortly after Initial Settlement, Current Biology 28, 1-9 [PDF]

P Skoglund (2018) Northwest Passage to Scandinavia, Nature Ecology & Evolution, 2:593–594 [PDF]

2017

P Pečnerová, E Palkopoulou, CW Wheat, P Skoglund, S Vartanyan, A Tikhonov, P Nikolskiy, J van der Plicht, D Díez-del-Molino, L Dalén (2017), Mitogenome evolution in the last surviving Woolly Mammoth population reveals neutral and functional consequences of small population size, Evolution Letters, 1: 292–303.

L Fehren-Schmitz*, CL Jarman*, KM Harkins*, M Kayser, BN Popp, P Skoglund* (2017) Genetic Ancestry of Rapanui before and after European Contact, Current Biology, 27:1-7

K Prüfer, C de Filippo*, S Grote*, F Mafessoni*, P Korlević, M Hajdinjak, B Vernot, L Skov, P Hsieh, S Peyrégne, D Reher, C Hopfe, S Nagel, T Maricic, Q Fu, C Theunert, R Rogers, P Skoglund, M Chintalapati, M Dannemann, BJ Nelson, FM Key, P Rudan, Ž Kućan, I Gušić, LV Golovanova, VB Doronichev, N Patterson, D Reich, EE Eichler, M Slatkin, MH Schierup, A Andrés, J Kelso, M Meyer, S Pääbo (2017) A high-coverage Neandertal genome from Vindija Cave in Croatia, Science, 358(6363):655-658

P Skoglund, J Thompson, ME Prendergast, A Mittnik*, K Sirak*, M Hajdinjak*, T Salie*, N Rohland, S Mallick, A Peltzer, A Heinze, I Olalde, M Ferry, E Harney, M Michel, K Stewardson, J Cerezo-Roman, C Chiumia, A Crowther, E Gomani-Chindebvu, AO Gidna, KM Grillo, G Hellenthal, R Helm, M Horton, S Lopez, AZP Mabulla, J Parkington, C Shipton, R Tibesasa, M Welling, V Hayes, DJ Kennett, R Ramesar, M Meyer, S Pääbo, N Patterson, A Morris, N Boivin, R Pinhasi, J Krause, D Reich (2017) Reconstructing prehistoric African population structure, Cell, 171:59-71 [PDF]

KA Owers, P Sjödin, CM Schlebusch, P Skoglund, H Soodyall, M Jakobsson (2017) Adaptation to disease exposure in indigenous southern African populations, Proceedings of the Royal Society B, 284: 20170226

DJ Kennett, S Plog, RJ George, BJ Culleton, AS Watson, P Skoglund, N Rohland, S Mallick, K Stewardson, L Kistler, SA LeBlanc, PM Whiteley, D Reich, GH Perry (2017) Archaeogenomic Evidence Reveals Prehistoric Matrilineal Dynasty, Nature Communications, 8: 14115

2016

P Skoglund, C Posth, K Sirak, M Spriggs, F Valentin, S Bedford, GA Clark, C Reepmeyer, D Fernandes, Q Fu, E Harney, M Lipson, S Mallick, M Novak, N Rohland, K Stewardson, S Abdullah, MP Cox, FR Friedlaender, JS Friedlaender, T Kivisild, G Koki, P Kusuma, DA Merriwether, F-X Ricaut, JTS Wee, N Patterson, J Krause, R Pinhasi*, D Reich* (2016) Genomic insights into the peopling of the Southwest Pacific, Nature, 538:510–513, [PDF]

S Mallick, H Li*, M Lipson*, I Mathieson*, M Gymrek, F Racimo, M Zhao, N Chennagiri, S Nordenfelt, A Tandon, P Skoglund, I Lazaridis, S Sankararaman, Q Fu, N Rohland, G Renaud , Y Erlich, T Willems, C Gallo, JP Spence, YS Song, G Poletti, F Balloux, G van Driem, P de Knijff, I Gallego Romero, AR Jha, DM Behar, CM Bravi, C Capelli, T Hervig, A Moreno-Estrada, OL Posukh, E Balanovska, O Balanovsky, S Karachanak-Yankova, H Sahakyan, D Toncheva, L Yepiskoposyan, C Tyler-Smith, Y Xue, MS Abdullah, A Ruiz-Linares, Cynthia M. Beall, Anna Di Rienzo, C Jeong, EB Starikovskaya, E Metspalu, J Parik, R Villems, BM Henn, U Hodoglugil, R Mahley, A Sajantila, G Stamatoyannopoulos, JTS Wee, R Khusainova, E Khusnutdinova, S Litvinov, G Ayodo, D Comas, M Hammer, T Kivisild, William Klitz, Cheryl Winkler, D Labuda, M Bamshad, LB Jorde, SA Tishkoff, W. Scott Watkins, M Metspalu, S Dryomov, R Sukernik, L Singh, K Thangaraj, S Pääbo, J Kelso, N Patterson, D Reich (2016) The Simons Genome Diversity Project: 300 genomes from 142 diverse populations, Nature, 538, 201–206, [PDF]

P Skoglund, D Reich (2016) A genomic view of the peopling of the Americas, Current Opinion in Genetics and Development, 41:27-35, [preprint] [PDF]

Q Fu, C Posth*, M Hajdinjak*, M Petr, S Mallick, D Fernandes, A Furtwängler, W Haak, M Meyer, A Mittnik, B Nickel, A Peltzer, N Rohland, V Slon, S Talamo, I Lazaridis, M Lipson, I Mathieson, S Schiffels, P Skoglund , AP Derevianko, N Drozdov, V Slavinsky, A Tsybankov, R Grifoni Cremonesi, F Mallegni, B Gély, E Vacca, MR González Morales, LG Straus, C Neugebauer-Maresch, M Teschler-Nicola, S Constantin, OT Moldovan, S Benazzi, M Peresani, D Coppola, M Lari, Stefano Ricci, A Ronchitelli, F Valentin, C Thevenet, K Wehrberger, D Grigorescu, H Rougier, I Crevecoeur, D Flas, P Semal, MA Mannino, C Cupillard, H Bocherens, NJ Conard, K Harvati, V Moiseyev, DG Drucker, J Svoboda, MP Richards, D Caramelli, R Pinhasi, J Kelso, N Patterson, J Krause, S Pääbo, D Reich, (2016) The genetic history of Ice Age Europe, Nature, 534:200-205 [PDF]

2015

T Günther*, C Valdiosera*, H Malmström, I Ureña, R Rodriguez-Varela, Ó Sverrisdóttir, EA Daskalaki, P Skoglund, T Naidoo, EM Svensson, JM Bermúdez de Castro, E Carbonell, M Dunn, J Storå, E Iriarte, JL Arsuaga, J Miguel Carretero, A Götherström, M Jakobsson (2015) Ancient Genomes link early farmers from Atapuerca in Spain to modern-day Basques, PNAS, 112:11917–11922

P Skoglund, S Mallick, MC Bortolini, N Chennagiri, T Hünemeier, ML Petzl-Erler, FM Salzano, N Patterson, D Reich (2015) Genetic evidence for two founding populations of the Americas, Nature, 525:104-108 [PDF]

Q Fu*, M Hajdinjak*, OT Moldovan, S Constantin, S Mallick, P Skoglund, N Patterson, N Rohland, I Lazaridis, B Nickel, B Viola, K Prüfer, M Meyer, J Kelso, D Reich, S Pääbo (2015) An early modern human from Romania with a recent Neanderthal ancestor, Nature, 524:216–219 [PDF]

P Skoglund, E Ersmark, E Palkopoulou, L Dalén (2015) Ancient wolf genome reveals an early divergence of the ancestors of domestic dogs and admixture into high-latitude breeds, Current Biology, 25:1515-1519, [PDF] [data]

E Palkopoulou, S Mallick, P Skoglund, J Enk, N Rohland, H Li, A Omrak, S Vartanyan, H Poinar, A Götherström, D Reich, L Dalén (2015) Complete genomes reveal signatures of demographic and genetic declines in the Woolly Mammoth, Current Biology, 25:1395-1400 [PDF]

RR da Fonseca, BD Smith, N Wales, E Cappellini, P Skoglund, M Fumagalli, JA Samaniego, C Carøe, MC. Ávila-Arcos, DE Hufnagel, T Sand Korneliussen, F Garrett Vieira, M Jakobsson, B Arriaza, E Willerslev, R Nielsen, MB Hufford, A Albrechtsen, J Ross-Ibarra, MTP Gilbert (2015) The origin and evolution of maize in the American Southwest, Nature Plants, 14003

19. M Krzewińska, G Bjørnstad, P Skoglund, PI Olason, J Bill, A Götherström, E Hagelberg (2015) Mitochondrial DNA variation in the Viking Age population of Norway, Philosophical Transactions of the Royal Society B, 370: 20130384

H Malmström*, A Linderholm*, P Skoglund, J Storå, P Sjödin, MTP Gilbert, G Holmlund, E Willerslev, M Jakobsson, K Lidén, A Götherström (2015) Ancient mitochondrial DNA from the Northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process, Philosophical Transactions of the Royal Society B, 370: 20130373

2014

M Raghavan, M DeGiorgio, A Albrechtsen*, I Moltke*, P Skoglund*, TS Korneliussen, B Grønnow, M Appelt, HC Gulløv, TM Friesen, W Fitzhugh, H Malmström, S Rasmussen, J Olsen, L Melchior, BT Fuller, SM Fahrni, T Stafford Jr., V Grimes, MAP Renouf, J Cybulski, N Lynnerup, M Mirazon Lahr, K Britton, R Knecht, J Arneborg, M Metspalu, OE Cornejo, AS Malaspinas, Y Wang, M Rasmussen, V Raghavan, TVO Hansen, E Khusnutdinova, T Pierre, K Dneprovsky, C Andreasen, H Lange, MG Hayes, J Coltrain, VA Spitsyn, A Götherström, L Orlando, T Kivisild, R Villems, MH Crawford, FC Nielsen, J Dissing, J Heinemeier, M Meldgaard, CD Bustamante, DH O’Rourke, M Jakobsson, MTP Gilbert, R Nielsen, E Willerslev, (2014) The genetic prehistory of the New World Arctic, Science, 345:6200

P Skoglund, P Sjödin, T Skoglund, M Lascoux, M Jakobsson (2014) Investigating population history using temporal genetic differentiation, Molecular Biology and Evolution, 31(9): 2516–2527

P Skoglund*, H Malmström*, A Omrak, M Raghavan, C Valdiosera, T Günther, P Hall, K Tambets, J Parik, K-G Sjögren, J Apel, E Willerslev, J Storå, A Götherström, M Jakobsson (2014) Genomic diversity and admixture differs for Stone-Age Scandinavian foragers and farmers, Science, 344:747-750 [data]

P Sjödin, P Skoglund, M Jakobsson (2014) Assessing the maximum contribution from ancient populations, Molecular Biology and Evolution, 31(5): 1248-1260.

M Rasmussen*, SL Anzick*, MR Waters, P Skoglund, M DeGiorgio, TW Stafford Jr, S Rasmussen, I Moltke, A Albrechtsen, SM Doyle, GD Poznik, V Gudmundsdottir, R Yadav, A-S Sapfo, S Stockton White V, M Allentoft, OE Cornejo, K Tambets, A Eriksson, P Heintzman, M Meiri, M Karmin, T Sand Korneliussen, TL Pierre, J Stenderup, L Saag, V Warmuth, M Cabrita Lopes, RS Malhi, S Brunak, T Sicheritz-Ponten, I Barnes, M Collins, L Orlando, F Balloux, A Manica, R Gupta, M Metspalu, CD Bustamante, M Jakobsson, R Nielsen, E Willerslev (2014) The genome of a Late Pleistocene human from a Clovis burial site in Western Montana, Nature, 506:225–229

P Skoglund, BH Northoff, MV Shunkov, A Derevianko, S Pääbo, J Krause, M Jakobsson (2014) Separating ancient DNA from modern contamination in a Siberian Neandertal, PNAS, 111 (6): 2229-2234 [PDF] [PMDtools software]

2013

M Raghavan*, P Skoglund*, K Graf, M Metspalu, A Albrechtsen, I Moltke, S Rasmussen, TW Stafford Jr, L Orlando, E Metspalu, M Karmin, K Tambets, S Rootsi, R Mägi, PF Campos, E Balanovska, O Balanovsky, E Khusnutdinova, S Litvinov, LP Osipova, SA Fedorova, MI Veovoda, M DeGiorgio, T Sicheritz-Ponten, S Brunak, S Demeshchenko, T Kivisild, R Villems, R Nielsen, M Jakobsson, E Willerslev, (2014) Upper Palaeolithic Siberian genome reveals the dual ancestry of Native Americans, Nature, 505: 87–91, Published Online 20 November 2013

PhD Thesis: P Skoglund, (2013) Reconstructing the human past using ancient and modern genomes, Digital Comprehensive Summaries from the Faculty of Science and Technology 1069, [PDF]

P Skoglund, J Storå, A Götherström, M Jakobsson (2013) Accurate sex identification of ancient human remains using DNA shotgun sequencing, Journal of Archaeological Science, 40(12):4477-4482 [Nature Research Highlight]

CM Schlebusch*, P Sjödin*, P Skoglund*, M Jakobsson (2013) Stronger signal of recent selection for lactase persistance in Maasai than in Europeans, European Journal of Human Genetics, 21(5):550-553

2012

CM Schlebusch*, P Skoglund*, P Sjödin, LM Gattepaille, S Li, D Hernandez, F Jay, A Singleton, MGB Blum, H Sodyall, M Jakobsson (2012) Genomic variation of seven Khoe-San groups reveals adaptation and complex African history, Science, 338:374-379 [supplement]

P Skoglund, H Malmström, M Raghavan, J Storå, P Hall, E Willerslev, MTP Gilbert, A Götherström§ & M Jakobsson§ (2012) Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science, 336:466-469 [pdf] [supplement] [data] [News & Analysis by M. Balter] [Rated '10' by faculty of 1000] [SMBE 2012 poster]

V Nyström, J Humphrey, P Skoglund, NJ McKeown, S Vartanyan, PW Shaw, K Lidén, M Jakobsson, I Barnes, A Angerbjörn, A Lister & L Dalén (2012) Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation, Molecular Ecology, 21:3391-3402 [Perspective by M. Thomas]

H Malmström, M Vretemark, A Tillmar, M Brandström-Durling, P Skoglund, MTP Gilbert, E Willerslev, G Holmlund & A Götherström (2012) Finding the founder of Stockholm – a kinship study based on Y-chromosomal, autosomal and mitochondrial DNA, Annals of Anatomy, 194:138-145

2011

P Skoglund, M Jakobsson (2011) Archaic human ancestry in East Asia, PNAS, 108:18301-18306

S Castroviejo-Fisher*, P Skoglund*, R Valadez, C Vilá & JA Leonard (2011) Vanishing Native American dog lineages, BMC Evolutionary Biology 11:73

P Skoglund, A Götherström & M Jakobsson, (2011) Estimation of population divergence times using non-overlapping genomic sequences: examples from dogs and wolves, Molecular Biology and Evolution 28:1505-1517

2010

P Skoglund, J Höglund, (2010) Sequence polymorphism in candidate loci for phenotypic differences in winter plumage between Scottish and Scandinavian populations of Willow grouse, PLoS ONE 5(4): e10334

*These authors contributed equally/co-first authors

§These authors contributed equally/co-senior authors