Peer Reviewed & Published

Undergraduate (*) and graduate student (^#) contributions noted by symbols

2022

1. Gareis, J., Larson, E., Brandt, J., Hondula, K., Shogren, A.J., Chraibi, V., Nodine, E., Berges, J., Rock, A., Kincaid, D., Levine, T., Ardon, M., Vanni, M., Little, C., Busch, K., Gallagher, E., Editing Aquatic Wikipedia Articles to Teach Students Critical Thinking and Scientific Writing. Invited Submission to Frontiers in Hydrology Special Issue on Hydrology Education.

2. ^#Brandao-Dias, P., Deatsch, A., Tank, J., Shogren, A.J., Rosi, E., Ruggiero, S., Tanner, C., Egan, S. A novel field-based protein detection method using Light Transmission Spectroscopy and Antibody Functionalized Gold Nanoparticles. In Revision at Nano Letters.

3. Aoki, L., Brisbin, M.M., Houndshell, A.G., Kincaid, D.W., Larson, E., Sansom, B.J., Shogren, A.J., Smith, R.S., Sullivan-Stack, J. Preparing aquatic research for an extreme future: A call for unified definitions, tools, and approaches. In Revision at Bioscience.

4. Shogren, A.J., Zarnetske, J.P., Abbott, B.W., ^#Bratsman, S., ^# Brown, B., Carey, M., Fulweber, R., Greaves, H.E., ^#Haines, E., ^#Iannucci, F., Koch, J.C., Medvedeff, A., O’Donnell, J.A., *Patch, L., Poulin, B.A., Williamson, T.J., Bowden, W.B. 2022. Multi-year, spatially extensive, watershed scale synoptic stream chemistry and water quality conditions for six permafrost underlain Arctic watersheds. Earth Systems Science Data. https://essd.copernicus.org/preprints/essd-2021-155/

2021

5. *Brown, B., Fullerton, A.H., Kopp, D., Tromboni, F., Shogren, A.J., Webb, J.A., Ruffing, C., Heaton, M.J., Kuglerova, L., Allen, D.C.., ^#McGill, L., Zarnetske, J.P., Whiles, M.R., Jones, J.B., Abbott, B.W. 2021. The Music of Rivers: How the mathematics of waves reveals global drivers of streamflow regimes. Earth & Space Science Open Archives (ESSoar). https://doi.org/10.1002/essoar.10507854.1

6. ^#Brandão-Dias, P., Rosi, E.J., Shogren, A.J., Tank, J.L., Hamilton, S.K., Malcolm, H., Fisher, D., Egan, S.P. 2021. Fate of environmental proteins (eProteins) from genetically engineered crops in streams is controlled by pH and ecosystem metabolism. Environmental Science & Technology. https://doi.org/10.1021/acs.est.0c05731

7. Abbott, B.W., Rocha, A., Shogren, A.J., Zarnetske, J.P., ^# Iannucci, F., Bowden, W.B., ^# Bratsman, S.P., ^# Patch, L., ^# Watts, R., Fulweber, R., ^# Frei, R.J., Huebner, A.M., Ludwig, L., Carling, G. 2021. Tundra wildfire triggers long-term lateral nitrogen loss. Global Biogeochemical Cycles. https://doi.org/10.1111/gcb.15507

2020

8. Shogren, A.J., Zarnetske, J.P., Abbott, B.W., *Cairns, S., *Duda, M.., ^# Iannucci, F., Bowden, W.B. 2020. Seasonal and event-based concentration-discharge responses in Arctic watersheds. Limnology & Oceanography. https://doi.org/10.1002/lno.11682

9. Kincaid, D.W., Beck, W., Brisbin, M. M., Farrell, K.J., Hondula, K. L., Larson, E. I, Shogren, A.J. 2020. How Wikipedia can help resolve information inequality in the aquatic sciences. Limnology & Oceanography Letters. http://dx.doi.org/10.1002/lol2.10168

10. ^# Stachelek, J., Hondula, K., Kincaid, D., Shogren, A.J. Ripples on the web: spreading lake information via Wikipedia. 2020. Limnology & Oceanography Bulletin. https://doi.org/10.1002/lob10382

11. Shogren, A.J., Zarnetske, J.P., Abbott, B.W., ^# Iannucci, F., Bowden, W.B. We cannot shrug off the shoulder seasons: Addressing knowledge and data baps in an Arctic headwater. 2020. Environmental Research Letters. https://doi.org/10.1088/1748-9326/ab9d3c

12. ^# Abernathy, E.F., Arismendi, I., Boegehold, A.G., Colon-Gaud, C., Cover, M.R., Larson, E.I., Moody, E., Penaluña, B.E., Shogren, A.J., Webster, A., Woller-Skar, M. Diverse, equitable, and inclusive scientific societies: Progress and opportunities in the Society for Freshwater Science. 2020. Freshwater Science. 39(3). https://doi/abs/10.1086/709129

13. Shogren A.J., JL Tank, D Bolster, B.R. Hanrahan. Controls on particle retention in experimental streams. 2020. Freshwater Science. 39(1): 28-38. https://doi.org/10.1086/707396

2019

14. ^# Kim, J., Roche, K., Shogren, A.J., Sticha, J., Bolster, D., Doudrick, K. 2019. Transport of food and catalytic grade titanium dioxide nanoparticles in controlled field streams with varying streambed and biofilm conditions. Environmental Science: Nano. 6:3454. https://doi.org/10.1039/C9EN01007F

15. Shogren, A.J., Zarnetske, J.P., Abbott, B.W., ^#Iannucci, F., *Frei, R., *Griffin, N., Bowden, W.B. Revealing biogeochemical signatures of Arctic landscapes using river chemistry. 2019. Scientific Reports 9:12894. https://doi.org/10.1038/s41598-019-49296-6

16. Shogren, A.J., Tank, J.L., Riis, T., Egan, S., Bolster, D. 2019. Riverine distribution of eDNA reflects a balance among density, transport, and removal processes. 2019. Freshwater Biology. 64 (8): 1467-1479. doi: 10.1111/fwb.13319 https://doi.org/10.1111/fwb.13319

17. Shogren, A.J., Tank, J.L., Rosi, E.J., ^# Dee, M.D., ^# Speir, S., Bolster, D., Egan, S.P. 2019. Transport and instream removal of the Cry1Ab protein from genetically engineered maize is mediated by biofilms in experimental streams. PLOS One. 14(5): e0216481 https://doi.org/10.1371/journal.pone.0216481

18. Hoellein, T.J., Shogren, A.J., Tank, J.L., * Risteca, P., Kelly, J.J. Microplastic deposition velocity in streams follows patterns for naturally occurring allochthonous particles. 2019. Scientific Reports. 9: 3740.. https://doi.org/10.1038/s41598-019-40126-3

19. Roche, K., Shogren, A.J., Aubeneau, A., Tank, J.L., Bolster, D. 2019. Modeling benthic vs. hyporheic nutrient uptake in unshaded streams with varying substrates. Journal of Geophysical Research. 124: 367-383. https://doi.org/10.1029/2018JG004684

20. Deatsch, A., Egan, S.P., Sun, N., Shogren, A.J., Tank, J.L., Tanner, C., Ruggiero, S. 2019. Rapid quantitative protein detection by Light Transmission Spectroscopy. Applied Optics. 58(4): 1121. https://doi.org/10.1364/AO.58.001121

2018 and prior

21. Shogren, A.J., J.L. Tank, *O. August, E.J Rosi, B.R. Hanrahan, M.A. Renshaw, C.A. Gantz, D. Bolster. 2018. Water velocity and biofilm control eDNA degradation in recirculating streams. Environmental Science and Technology. 52(15) pp. 8530-8537. https://doi.org/10.1021/acs.est.8b01822

22. Li, Y., Evans, N.T., Renshaw, M.A., Jerde, C.L., Olds, B.P, Shogren, A.J., Deiner, K., Lodge, D.M., Lamberti, G.A., Pfrender, M.E. 2018. Estimating fish alpha- and beta-diversity along a longitudinal stream gradient with environmental DNA metabarcoding. Metabarcoding and Metagenomics 1: 1-11. e24262. https://doi.org/10.3897/mbmg.2.24262

23. Hanrahan, B.R., Tank J.L., Shogren A.J., Rosi, E.J. 2018. Using the Raz-Rru method to examine the linkages between substrate, biofilm colonization, and stream metabolism in open-canopy systems. Freshwater Biology. 63: 1610-1624. https://doi.org/10.1111/fwb.13190

24. Shogren, A.J., Tank, J.L., *Andruszkiewicz, E.A., Olds, B., Mahon, A.R., Jerde, C.L., Bolster, D. 2017. Controls on eDNA movement in streams: Transport, retention, and resuspension. Scientific Reports. 7(1): 5065. https://doi.org/10.1038/s41598-017-05223-1

25. Griffiths, N.A., Tank, J.L., Royer, T.V., Shogren, A.J., Frauendorf, T.C., Rosi, E.J., Whiles, M.R. 2017. Occurrence, degradation, and sorption of Cry1Ab protein from genetically-modified maize detritus in agricultural streams. Science of the Total Environment. 592: 97-105. https://doi.org/10.1016/j.scitotenv.2017.03.065

26. Jerde, C.L., Olds, B.P., Shogren, A.J., *Andruszkiewicz, E.A., Mahon, A.R., Bolster, D., and Tank, J.L. 2016. Estimating the transport of vertebrate environmental DNA in lotic systems with variable substrate. Environmental Science & Technology. 50(16). https://doi.org/10.1021/acs.est.6b01761

Non-Academic Articles

1. Shogren, A.J. & Zarnetske, J. P. Streams as Sensors: Arctic Watersheds as Indicators of Change. LTER Data Nuggets: http://datanuggets.org/2019/11/streams-as-sensors/

2. WikiProject Limnology & Oceanography Resources to Incorporate Wikipedia in the Classroom: https://tinyurl.com/yclmlpz9

3. Shogren, A.J., Zarnetske, J.P., Medvedev, A., Iannucci, F., Rec, A., Bowden, W.B. Limit by Limit: Nutrient controls algal growth in Arctic streams. LTER Data Nuggets: http://datanuggets.org/2020/07/limit-by-limit/

4. “New understanding of ecosystem conditions in Arctic uncovered”. Michigan State University College of Natural Science News Release. https://ees.natsci.msu.edu/news/new-understanding-of-ecosystem-conditions-in-arctic-uncovered/

Published Datasets

1. Shogren, A. et al. (2018), Water Flow and Biofilm Cover Influence Environmental DNA Detection in Recirculating Streams, Dryad, Dataset, https://doi.org/10.5061/dryad.tmpg4f4wc

2. Zarnetske, J., Shogren, A., Bowden, W.B., Abbott, B.W. Iannucci, F., Medvedev, A. High-frequency dissolved organic carbon and nitrate from the Kuparuk River outlet near Toolik Field Station, Alaska, summer 2017-2019. https://arc-lter.ecosystems.mbl.edu/2017-2019zarnetskekupchem

3. Zarnetske, J., Shogren, A., Bowden, W.B., Abbott, B.W. Iannucci, F., Medvedev, A. High-frequency dissolved organic carbon and nitrate from the Oksrukuyik Creek outlet near Toolik Field Station, Alaska, summer 2017-2019. https://arc-lter.ecosystems.mbl.edu/2017-2019zarnetskeokschem

4. Zarnetske, J., Shogren, A., Bowden, W.B., Abbott, B.W. Iannucci, F., Medvedev, A. High-frequency dissolved organic carbon and nitrate from the Trevor Creek outlet near Toolik Field Station, Alaska, summer 2017-2019. https://arc-lter.ecosystems.mbl.edu/2017-2019zarnetsketrevchem