†; corresponding author, *; co-first author
2020
Yamada N, Sakai H, Onuma R, Kroth PG, Horiguchi T. (accepted). Five non-motile dinotom dinoflagellates of the genus Dinothrix. Front. Plant Sci.
Fujiwara T, Hirooka S, Ohbayashi R, Onuma R, Miyagishima S. (2020). Relationship between cell cycle and diel transcriptomic changes in metabolism in a unicellular red alga. Plant Physiol., 183: 1484–1501.
Onuma R†, Hirooka S, Kanesaki Y, Fujiwara T, Yoshikawa H, Miyagishima S† (2020). Changes in the transcriptome, ploidy, and optimal light intensity of a cryptomonad upon integration into a kleptoplastic dinoflagellate. The ISME Journal, In Press.
Ohbayashi R, Hirooka S, Onuma R, Kanesaki Y, Hirose Y, Kobayashi Y, Fujiwara T, Furusawa T, Miyagishima, S. (2020). Evolutionary changes in DnaA-dependent chromosomal replication in cyanobacteria. Front. Microbiol, 11: 786.
Harada R, Hirakawa Y, Yabuki A, Kashiyama Y, Maruyama M, Onuma R, Soukal P, Miyagishima S, Hampl V, Tanifuji G, Inagaki, Y. (2020). Inventory and evolution of mitochondrion-localized family A DNA polymerases in euglenozoa. Pathogens, 9: 257.
2019
Uzuka A*, Kobayashi Y*, Onuma R*, Hirooka S, Kanesaki Y, Yoshikawa H, Fujiwara T, Miyagishima S†. (2019) Responses of unicellular predators to cope with the phototoxicity of photosynthetic prey. Nat. Commun., 10: 5606.
Yamada N, Bolton JJ, Trobajo R, Mann DG, Dąbek P, Witkowski A, Onuma R, Horiguchi T, Kroth PG. (2019). Discovery of a kleptoplastic ‘dinotom’dinoflagellate and the unique nuclear dynamics of converting kleptoplastids to permanent plastids. Sci. Rep., 9: 1-13.
2018
Yokouchi K, Onuma R, Horiguchi T. (2018). Ultrastructure and phylogeny of a new species of mixotrophic dinoflagellate, Paragymnodinium stigmaticum sp. nov.(Gymnodiniales, Dinophyceae). Phycologia, 57: 539-554.
2017
Hirooka S, Hirose Y, Kanesaki Y, Higuchi S, Fujiwara T, Onuma R, Era A, Ohbayashi R, Uzuka A, Nozaki H, Yoshikawa H, Miyagishima S. (2017). Acidophilic green algal genome provides insights into adaptation to an acidic environment. Proc. Natl. Acad. Sci. U.S.A., 114: E8304-E8313.
Onuma R†, Neha M, Miyagishima S†. (2017) Regulation of chloroplast and nucleomorph replication by the cell cycle in the cryptophyte Guillardia theta. Sci. Rep., 7: 2345.
2016
Onuma R†, Horiguchi T (2016) Specificity of Chroomonas (Cryptophyceae) as a sourceof kleptochloroplast for Nusuttodinium aeruginosum (Dinophyceae). Phycological Research 64: 35-43.
Hagino K, Tomioka N, Young JR, Takano Y, Onuma R, Horiguchi T. (2016). Extracellular calcification of Braarudosphaera bigelowii deduced from electron microscopic observations of cell surface structure and elemental composition of pentaliths. Mar. Micropaleontol., 125: 85-94.
2015
Onuma R, Watanabe K, Horiguchi T (2015) Pellucidodinium psammophilum gen. & sp. nov. and Nusuttodinium desymbiontum sp. nov. (Dinophyceae), two novel heterotrophs closely related to kleptochloroplastidic dinoflagellates. Phycologia 54: 192-209.
Onuma R, Horiguchi T (2015) Kleptochloroplast enlargement, karyoklepty and the distribution of the cryptomonad nucleus in Nusuttodinium (= Gymnodinium) aeruginosum (Dinophyceae). Protist 166: 177-195.
Gómez F, Onuma R, Artigas LF, Horiguchi T. (2015). A new definition of Adenoides eludens, an unusual marine sand-dwelling dinoflagellate without cingulum, and Pseudadenoides kofoidii gen. & comb. nov. for the species formerly known as Adenoides eludens. European Journal of Phycology, 50: 125-138.
2014
Watanabe K, Miyoshi Y, Kubo F, Onuma R, Murray S, Horiguchi T. (2014). Ankistrodinium armigerum sp. nov.(Dinophyceae), a new species of heterotrophic marine sand‐dwelling dinoflagellate from Japan and Australia. Phycological research 62: 125-135.
2013
Onuma R, Horiguchi T. (2013) Morphological transition in kleptochloroplasts after ingestion in the dinoflagellates Amphidinium poecilochroum and Gymnodinium aeruginosum (Dinophyceae). Protist 164: 622–642.
Hagino K, Onuma R, Kawachi M, Horiguchi T. (2013). Discovery of an endosymbiotic nitrogen-fixing cyanobacterium UCYN-A in Braarudosphaera bigelowii (Prymnesiophyceae). PloS one 8: e81749.