Welcome to module 5 of PATHOL 4014A. Weeks ten and eleven will explore the genetic mechanisms of ALS, with guest lecturer Addi.
Learning Outcomes:
Compare and contrast the complex inheritance patterns observed in the different types of ALS
Understand the genetic variation that makes ALS a polygenic disease
Apply foundational knowledge to genetic tools and screening to specific protocols used with ALS
I'm Bob; a pathology undergraduate student at Western University. I will teach you everything you need to know to become an expert in the genetic mechanisms involved in Amyotrophic Lateral Sclerosis.
ALS is a complex neurodegenerative condition caused by both genetic and non-genetic factors. Most ALS cases are sporadic (90–95%), in which patients may carry mutations associated with ALS that often arise de novo, or have reduced or incomplete penetrance. A significant prevalence of ALS cases (5–10%) are inherited16
You can quickly navigate each category in the table of contents below, and if you want even more information on a specific heading, make sure to check out Bob's Lab Notebook.
Inheritance Patterns of Amyotrophic Lateral Sclerosis (ALS): Familial vs. Sporadic 18
ALS can be categorized into both familial, with a notable family-related inherited genetic component to the disease, or sporadic, which lacks this familial component.
Sporadic ALS has no evidence of Mendelian Inheritance:
Sporadic ALS is considered idiopathic (of unknown cause) and lacks a direct inheritance pattern. However, genetic susceptibility factors contribute to risk.
Genetic susceptibility is based on acquired mutations (sporatic or inherited permutations):
Known Familial ALS Genes: Pathogenic variants in genes like SOD1, C9ORF72, TARDBP, FUS, ANG, OPTN, and SETX are implicated, though they act as low-penetrance susceptibility factors (i.e., they increase risk but do not always result in disease)17,18,19.
Non-Familial ALS Genes: Variants in TBK1, ATXN2, NEK1, TP73, and SMN1 duplications linked to susceptibility (low penetrance)17,18,19.
Rare and novel genetic variation is highly at play:
ALS has a high polygenic risk factor, as rare or novel coding variants in ALS genes are found in 28% of sporadic cases, with 4% having variants in multiple genes, suggesting a polygenic contribution.
Inheritance of familial or sporadic mutations are random, but susceptibility increases with prevalence of certain gene variations, and several errors during transcription, likely involving a combination of low-penetrance genetic variants, environmental factors, and epigenetic modifications16.
European Populations: C9ORF72 repeat expansions are most common (5.1%), followed by SOD1 (1.2%)16.
Asian Populations: SOD1 variants dominate (1.5%), with lower C9ORF72 prevalence (0.3%)16.
Mendelian Genetics can be observable in some Familially Aquired ALS cases:
Autosomal Dominant: Most common pattern. Key genes include C9ORF72(hexanucleotide repeat expansions), SOD1, TARDBP (TDP-43), and FUS. Offspring of an affected parent have a 50% chance of inheriting the mutation.
Autosomal Recessive: Rare. Examples include ALS2 (not mentioned in notes but recognized in literature) and certain OPTN variants.
X-Linked: Extremely rare (e.g., UBQLN2)18.
Key takeaways
Genetic Heterogeneity: Over 50 genes are associated with familial ALS, leading to variability in age of onset, progression, and symptoms.
Penetrance: the probability that a change will result in disease. In ALS, mutations are often incomplete (e.g., C9ORF72 penetrance is ~50–80% by age 80), meaning not all mutation carriers develop ALS.
Key Genes:
C9ORF72: Most common cause in European populations (AD).
SOD1: Second most common globally, with AD inheritance.
FUS and TARDBP: Typically AD, linked to aggressive phenotypes.
Key Contrasts
Familial ALS: Driven by high-penetrance mutations in single genes with clear Mendelian inheritance (mostly AD).
Sporadic ALS: Involves polygenic, low-penetrance risk variants, often interacting with environmental factors (e.g., smoking, heavy metal exposure).
Emerging Concepts for a hopeful future of ALS research20,21
Oligogenic Inheritance: Some cases may require variants in multiple genes to manifest disease.
Gene-Environment Interactions: Epigenetic changes (e.g., DNA methylation) may modulate risk in sporadic ALS.
Screening 19
Presymptomatic testing for at-risk relatives with a known family mutation (e.g., C9ORF72, SOD1). Requires genetic counseling due to ethical/psychological implications.
Prenatal testing (e.g., amniocentesis, IVF with preimplantation genetic diagnosis) for families with severe ALS mutations.
Research-based polygenic risk scores (combining low-penetrance variants) are experimental and not clinically validated.
Confirming ALS Diagnosis 19
ALS is diagnosed clinically by excluding mimics (e.g., myasthenia gravis, spinal muscular atrophy). Key confirmatory tools:
Electrodiagnostic Tests:
Electromyography (EMG): Detects lower motor neuron degeneration (fibrillations, sharp waves).
Nerve Conduction Studies (NCS): Rules out peripheral neuropathies.
Neuroimaging:
MRI of Brain/Spine: Excludes structural lesions (e.g., tumors, myelopathy).
Blood/urine tests to exclude metabolic disorders (e.g., thyroid dysfunction, heavy metal toxicity).
Cerebrospinal Fluid (CSF) Analysis
Muscle/Nerve Biopsy: Rarely used; helps exclude myopathies
The hunt for a "biomarker" 15-18
Neurofilament Light Chain (NfL): Elevated in CSF/blood of ALS patients; correlates with disease progression. Not specific to ALS.
TDP-43 Aggregates: Detected in CSF or via PET imaging (experimental phase).
Genetic Biomarkers: C9ORF72 repeat expansions or SOD1 variants in CSF/blood (experimental phase)
QUICK NAVIGATOR
Don't worry! I get it- there is so much interesting content on this page, it could be daunting!
Try listening to my AI-Generated podcast, where it discusses my rough notes and research findings in detail- breaking down the details and concepts we covered together in a "ALS Genetics Deep Dive" (see below).
How about solidifying your understanding by attempting this multiple choice practice quiz (see below).
The prize? A newfound appreciation for the world around you, a better grasp of genetic variation and that "I just wrote my exam" glow! Goodluck!