JOURNAL ARTICLES (International)
Ramos, M. Á., Busquets, A., Ferrer-Uris, B., Eken, A., Beslija, F., Zhang, F., ... & Angulo-Barroso, R. (2025). Relationship between overall right pre-frontal cortex activity and learning and retention of a visuomotor adaptation task: A continuous analysis. Psychology of Sport and Exercise, 79, 102827.
Stute, K., Gossé, L. K., Montero-Hernandez, S., Perkins, G. A., Yücel, M. A., Cutini, S., ... & Zainodini, H. (2025). The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology. Neurophotonics, 12(2), 027801-027801.
Eken, A., Yüce, M., Yükselen, G., & Erdoğan, S. B. (2024). Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach. Neurophotonics, 11(4), 045015-045015.
Eken, A., Nassehi, F., & Eroğul, O. (2023). Diagnostic Machine Learning Approaches on Clinical Populations and Clinical Conditions using Functional Near Infrared Spectroscopy: A Review. medRxiv, 2023-02.
Parfentyeva, V., Fischer, J. B., Maruccia, F., Rosas, K., Alvarez, I. D., Rey-Perez, A., ... & Eken, A. (2023). Microvascular Cerebral Blood Patterns Reveal Both the Absolute Values and “waves” of Intracranial Pressure. In European Conference of Biomedical Optics, 25–29 June 2023 Munich, Germany. SPIE-OSA.
Zhang, F., Ciarrusta, J., Ghailan, I., Gervain, J., Santolin, C., Sanchez, D. S., ... & Durduran, T. (2023). Monitoring neural activity in infants: integration of functional diffuse correlation spectroscopy and electroencephalography. In European Conference of Biomedical Optics, 25–29 June 2023 Munich, Germany. SPIE-OSA.
Tagliabue, S., Parfentyeva, V., Fischer, J. B., Maruccia, F., Rosas, K., Alvarez, I. D., ... & Durduran, T. (2023). Microvascular cerebral blood flow dynamics for intracranial pressure estimates: transcranial diffuse correlation spectroscopy. Metabolism, 43(1S), S84-S197.
Aykut Eken, Damla Sayar-Akaslan, Bora Baskak, Kerim Münir. Diagnostic Classification of Schizophrenia and Bipolar Disorder by Using Dynamic Functional Connectivity: an fNIRS Study. Journal of Neuroscience Methods, 2022, 376, 109596. https://doi.org/10.1016/j.jneumeth.2022.109596
Gülay Cedden, Aykut Eken & Tuna Çakar, Extracting, computing, coordination: what does a triphasic ERP pattern say about language processing?, Language, Cognition and Neuroscience, 2021, DOI: 10.1080/23273798.2021.2006726
Aykut Eken, Assessment of flourishing levels of individuals by using resting-state fNIRS with different functional connectivity measures, Biomedical Signal Processing and Control, Volume 68, 2021, 102645, https://doi.org/10.1016/j.bspc.2021.102645.
Burçin çolak, Aykut Eken, Adnan Kusman, Damla Sayar Akaslan, Selma Çilem Kızılpınar, Batuhan Çakmak, Neşe Burcu Bal, Kerim Munir, Özgür Öner, Bora Baskak, The Relationship of Cortical Activity Induced by Pain Stimulation With Clinical and Cognitive Features of Somatic Symptom Disorder: A Controlled Functional Near Infrared Spectroscopy Study, J Psychosom Res. 2021 Jan;140:110300. https://doi.org/10.1016/j.jpsychores.2020.110300.
Aykut Eken, Burcin Colak, Burcu Bal, Adnan Kusman, Selma Cilem Kizilpinar, Damla Sayar Akaslan, Bora Baskak. Hyperparameter-Tuned Prediction of Somatic Symptom Disorder By Using fNIRS Based Dynamic Functional Connectivity, J Neural Eng. 2019 Dec 16;17(1):016012 https://doi.org/10.1088/1741-2552/ab50b2.
Didem Gokcay, Aykut Eken, Serdar Baltacı. Binary Classification Using Neural and Clinical Features: An Application in Fibromyalgia with Likelihood based Decision Level Fusion, IEEE Journal of Biomedical and Health Informatics. 23(4), (2019) 10.1109/JBHI.2018.2844300
Aykut Eken, Didem Gokcay, Cemre Yilmaz, Bora Baskak, Aysegul Baltaci, Murat Kara . Association of Fine Motor Loss and Allodynia in Fibromyalgia: An fNIRS Study. J Mot Behav, 50(6) (2018). 10.1080/00222895.2017.1400947
Aykut Eken, Murat Kara, Bora Baskak, Aysegul Baltaci, Didem Gokcay, Differential efficiency of transcutaneous electrical nerve stimulation in dominant versus non-dominant hands in fibromyalgia : placebo-controlled functional near-infrared spectroscopy study, Neurophotonics 5(1), 011005 (2018), 10.1117/1.NPh.5.1.011005
JOURNAL ARTICLES (National)
Baskak, B., Gündüz, H., Eken, A., & Cangöz Tavat, B. (2024). Fonksiyonel Yakın Kızılaltı Spektroskopi. Sosyal Bilimlerde Beyin Görüntüleme Teknolojilerinin Kullanımı-El Kitabı.
Aykut Eken. Interdisciplinary Approaches to Understand "Social Brain", PiVOLKA, 7(25), (2017), ISSN: 2587-022X (Turkish).
Aykut Eken, Soner Çivilibal, Şevket Çalışkan, Pınar Deniz Tosun, Prediction of smoking status by using multi-physiological measures and machine learning techniques, Dokuz Eylül Üniversitesi Mühendislik Fakültesi Fen ve Mühendislik Dergisi , 23 (67) , 55-69
CONFERENCE PUBLICATIONS
International
Eken, A., Klein, F., & Kranczioch, C. Simulation of Task-Evoked Systemic Activity in fNIRS: An ongoing investigation.
Non-invasive estimation of intracranial pressure by fast diffuse correlation spectroscopy - a multi-center study, Jonas B. Fischer, Susanna Tagliabue, Federica Maruccia, Amelia Jimenez- Sanchez, Eashani Sathialingam, Wesley B. Baker, Aykut Eken, Ameer Ghouse, Anna Rey-Perez, Marcelino Baguena, Katiuska Rosas, Ofer Sadan, Prem A. Kandiah, Owen B. Samuels, Ramani Balu, Ricardo Zucca, Udo M. Weigel, David R. Busch, Erin M. Buckley, Arjun G. Yodh, Daniel J. Licht, W. Andrew Kofke, Maria A. Poca, Gemma Piella, Juan Sahuquillo, Turgut Durduran. Photonics West 2021,BIOS (Optical Tomography and Spectroscopy of Tissue XIV). 23-28 January 2021. San Francisco, California, USA.
The P600 Potential Could Index Cognitive Costs in Sentence Processing, Gulay Cedden, Aykut Eken , Tuna Cakar, Organization of Human Brain Mapping 2017 Annual Meeting, 25-29 June 2017, Vancouver Convention Centre, Vancouver, Canada.
Analyzing Hand Preference in Self-Guided Non-Painful Tactile Stimulation for FM patients: an fNIRS Study, Aykut Eken , Didem Gokcay, Cemre Topcu, Bora Baskak, Aysegul Baltaci, Murat Kara, Organization of Human Brain Mapping 2017 Annual Meeting, 25-29 June 2017, Vancouver Convention Centre, Vancouver, Canada.
The effect of typology on ERPs during sentence processing: Evidence from Turkish, Gulay Cedden, Aykut Eken , Organization of Human Brain Mapping 2016 Annual Meeting, 26-30 June 2016, Palexpo Exhibition and Congress Centre, Geneva, Switzerland.
Support Vector Classification of Fibromyalgia Syndrome using Hemodynamic Responses: an fNIRS Study, Aykut Eken , Didem Gokcay, Bora Baskak, Aysegul Baltaci, Murat Kara, Organization of Human Brain Mapping 2016 Annual Meeting, 26-30 June 2016, Palexpo Exhibition and Congress Centre, Geneva, Switzerland.
Identification rate of Schizophrenia based on local brain volumes and dichotic listening scores. Nuri Karabay, Didem Gokcay, Aykut Eken , Umut Orcun Turgut, Adile Oniz, Koksal Alptekin, Serhat Taslica, Kenneth Hugdahl, Murat Ozgoren, Organization of Human Brain Mapping 2014 Annual Meeting, 8-12 June 2014, Congress Center Hamburg, Hamburg.
Environmental Aesthetics and Human Prefrontal Cortex Activation Patterns During a Temporal Assessment Task: An fNIRS Study, Begum Erten, Aykut Eken ,8th FENS Forum of Neuroscience,14- 18 July 2012, Barcelona, Spain
Investigating the Effect of Tens in Pain Perception: An fNIRS Study in Somatosensory Cortex. Aykut Eken , Didem Gokcay, Bora Baskak, Murat Kara. Mind, Brain and Body Symposium. 19-20 March 2015. Humboldt Graduate School. Berlin / Germany.
Semantic and syntactic interaction in a morpho-syntactically complex language: Evidence from event-related potentials, Gulay Cedden, Aykut Eken ,KogWis 2012,11th Biannual Meeting of the German Cognitive Science Society,30th September 3rd October 2012, University of Bamberg, Germany.
National
Erdoğan, S., Ergün, S., Giregiz, H., Şahin, B. M., & Eken, A. (2024, October). Comparison of Machine Learning Algorithms for Yes/No Decoding Using Functional Near-Infrared Spectroscopy (fNIRS). In 2024 Medical Technologies Congress (TIPTEKNO) (pp. 1-4). IEEE.
Nassehi, F., Eken, A., Atalay, N. B., Firat, H., & Eroğul, O. (2024). Machine learning based severity classification of obstructive sleep apnea patients using awake EEG. Biomedical Signal Processing and Control, 96, 106566.
Eken, A., Nassehi, F., & Eroğul, O. (2024). Diagnostic machine learning applications on clinical populations using functional near infrared spectroscopy: a review. Reviews in the Neurosciences, 35(4), 421-449.
Nassehi, F., Par, A., Eken, A., Yetkin, S., & Eroğul, O. (2024, May). Defining The Optimal Alpha Band Connectivity Pathways To Detect Depression Using Explainable AI. In 2024 32nd Signal Processing and Communications Applications Conference (SIU) (pp. 1-4). Ieee.
Şahin, B. M., Şanlı, S., Erdoğan, K., Durmuş, M. E., Kara, Ö., Kaymak, B., ... & Eken, A. (2024, May). Identification of Neurological Markers of Sarcopenia Disease Using Functional Near-Infrared Spectroscopy and Machine Learning. In 2024 32nd Signal Processing and Communications Applications Conference (SIU) (pp. 1-4). Ieee.
Can, Y., Bigat, İ., Nassehi, F., Eken, A., & Eroğul, O. (2023, November). Determination of the Optimal EEG-based Features to Detect ADHD by Machine Learning Algorithms. In 2023 Medical Technologies Congress (TIPTEKNO) (pp. 1-4). IEEE.
Nassehi, F., Eken, A., Yetkin, S., & Eroğul, O. (2023). Determination of electrophysiological biomarkers to diagnose depression from alpha band using machine learning methods. Anatomy: International Journal of Experimental & Clinical Anatomy, 17.
Eken, A. (2023). Experimental and clinical applications of functional near infrared spectroscopy and functional diffuse correlation spectroscopy. Anatomy: International Journal of Experimental & Clinical Anatomy, 17.
Eken, A., Erdoğan, S. B., Yükselen, G., Şanlı, S., Yardımcı, H. E., Özger, İ., & Yüce, M. (2023). Pain decoding under analgesic conditions using functional near infrared spectroscopy and transfer learning. Anatomy: International Journal of Experimental & Clinical Anatomy, 17.
Şahin, B. M., Durmuş, M. E., Kara, Ö., Kaymak, B., Kara, M., Eken, A., & Şanlı, S. (2023). Non-invasive optical brain imaging of sarcopenia disease: preliminary results. Anatomy: International Journal of Experimental & Clinical Anatomy, 17.
Eken, A. (2023). El Sıkma Hareketinin İşlevsel Yakın Kızılaltı Spektroskopisi ve Elektromiyografi Sinyalleri Kullanılarak Sınıflandırılması. Dicle Üniversitesi Mühendislik Fakültesi Mühendislik Dergisi, 14(1), 35-46.
Current approaches in the analysis of fNIRS data: Considerations in data analysis, preprocessing steps. Considerations in statistical analysis, Aykut Eken, 20th National Neuroscience Congress 2022, Istanbul, Turkey
Resting-State fNIRS and Machine Learning Based Assessment of Vitality, Bora Mert Şahin, Aykut Eken, 20th National Neuroscience Congress 2022, Istanbul, Turkey