Talks
Modularizing the Control Search for Biological Systems, AMS Fall Central Sectional Meeting, special session on Discrete, Algebraic, and Topological Methods in Mathematical Biology, Creighton University, Omaha, NE, October 7-8, 2023.
The nonlinearity of regulation in biological networks. AMS Central Sectional Meeting, special session on "Mathematical Modeling in Biosciences", University of Cincinnati, Cincinnati, OH, April 15-16, 2023.
Phenotype Control Methods for Regulatory Networks. Math Colloquium, Department of Mathematics, Iowa State University, Mar 28, 2023.
The nonlinearity of regulation in biological networks. AMS Sectional Meeting, special session on "Combinatorics, probability and computation in molecular biology", Georgia Institute of Technology, Atlanta, Georgia, March 18-19, 2023
Asymptotic Results on Dynamics of Linear vs Nonlinear Boolean Networks. European Conference on Mathematical and Theoretical Biology and SMB annual meeting, minisymposium on Boolean networks and related modeling frameworks, Heidelberg, Germany, Sep 19-23, 2022.
Biological regulatory networks are less nonlinear than expected by chance. AMS Special Session on Mathematical Models for Biomolecular and Cellular Interactions, Joint Mathematics Meetings, April 6-9, 2022.
RNA secondary structure prediction via state inference with machine learning methods. AMS Special Session on the Mathematics of RNA and DNA, Joint Mathematics Meetings, April 6-9, 2022.
RNA secondary structure prediction via state inference with machine learning techniques, special session on Algebra, Combinatorics, and Topology in Biological Structures, AMS Fall Southeastern Sectional Meeting, University of South Alabama in Mobile, AL, November 20-21, 2021 (online).
Building model prototypes from time-course data, minisymposium on Building and Analyzing Models using Discrete Methods, BEER (International Symposium on Biomathematics and Ecology: Education and Research), November 12-14, 2021 (online).
Phenotype Control Methods for Regulatory Networks, Mathematics Colloquium, Department of Mathematics, Florida State University, October 1, 2021 (online).
Métodos de control para sistemas dinámicos discretos, Segundo Congreso Internacional, Multidisciplinario de Matemáticas, UNI, Lima, Peru, March 18, 2021 (online).
Improving RNA secondary structure prediction via state inference with machine learning and deep learning methods, Mathematical Biology Seminar, Iowa State University, February 17, 2021 (online).
Improving RNA secondary structure prediction via state inference with machine learning and deep learning methods. Joint Mathematics Meetings, AMS Special Session on the Mathematics of RNA and DNA, January 6-9, 2021 (online).
Phenotype Control for Regulatory Networks, Seminar on Applied Mathematical Modeling, Department of Applied Mathematics, University of California, Santa Cruz, November 16, 2020 (online).
Phenotype Control for Regulatory Networks, Laboratory of Systems Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of Florida, November 5, 2020 (online).
Funciones Canalizadoras y sus Aplicaciones. Seminario Matematico Virtual, organized by a group of math graduate students in Brazil, October 30, 2020 (online).
A data-driven modeling approach from gene expression data in axolotls, Mini-Symposium on Data-Driven Methods and Modeling with Applications to Health Science, SIAM Conference on Mathematics of Data Science, Cincinnati, OH, May 5-7, 2020.
Efficient control methods for stochastic Boolean networks, 12th International Symposium on Biomathematics and Ecology: Education and Research (BEER 2019), Mini-Symposium on Discrete and algebraic methods in mathematical biology I, II, and III, University of Wisconsin-La Crosse, La Crosse, WI, Oct 4-6, 2019.
Discrete Mathematical Biology, Tarde de Matematicas Aplicadas, Universidad Sergio Arboleda, Bogota, Colombia, August 22, 2019.
Frequent regulatory rules in molecular interaction networks, MBI Summit on the Rules of Life, Mathematical Biosciences Institute, Columbus, Ohio, June 24-28, 2019.
Measuring the impact of edge controls on the dynamics of stochastic discrete networks, minisymposium on Data-driven Approaches in the Life Sciences, SIAM Conference on Applications of Dynamical Systems (DS19), Snowbird Ski and Summer Resort in Snowbird, Utah, U.S, May 19 - 23, 2019.
Measuring the impact of edge controls on the dynamics of stochastic discrete networks, NSF-CBMS Conference: Mathematical Molecular Bioscience and Biophysics, University of Alabama, Tuscaloosa, AL, May 13-17, 2019.
Measuring the impact of edge controls on the dynamics of stochastic discrete networks, Boolean weekend organized by the Clarkson Center for Complex Systems and Science, Burlington, VT, April 5-6, 2019.
Using canalization for the control of discrete networks, special session on Algebraic and discrete methods in mathematical biology, AMS Sectional Meeting at Auburn University, Auburn, AL, March 15-17, 2019.
Using canalization for the control of discrete networks, International Symposium on Biomathematics and Ecology: Education and Research (BEER 2018), Mini-Symposium on Discrete methods in gene networks and neuroscience I, II, and III, Arizona State University, Tempe, AZ, Oct 5-7, 2018.
Discrete Mathematical Biology, Universidad Nacional Mayor de San Marcos, Grupo de Investigation Ciencias Matematicas para las Ciencias de la Vida. Lima, Peru, May 17, 2018.
Algebraic Methods for the Control of Boolean Networks, minisymposium on Algebraic geometry methods for discrete dynamical systems, SIAM Conference on Applied Algebraic Geometry at Georgia Institute of Technology, Atlanta, GA, July 31-August 4, 2017.
A Near-Optimal Control for Stochastic Gene Regulatory Networks, minisymposium on Discrete Methods in Molecular Biology, SIAM Annual Meeting, Pittsburgh, Pennsylvania, July 10-14, 2017. Talk.
Control Methods for Discrete Networks, Langenhop Lecture and SIU Mathematics Conference, Southern Illinois University, Carbondale, IL, May 15-16, 2017.
A Near-Optimal Control for Stochastic Gene Regulatory Networks, AMS special session on Differential Equations and Their Applications to Biology, Spring Central Sectional Meeting, Indiana University, Bloomington, Indiana, April 1-2, 2017.
Identification of control targets of Boolean molecular network models via computational algebra. Workshop 4: Control and Observability of Network Dynamics, Mathematical Biosciences Institute (MBI), Columbus, Ohio, April 11-15, 2016.
Estimating Propensity Parameters using Google PageRank and Genetic Algorithms, AMS special session on Algebraic and Combinatorial Methods in Mathematical Biology, University of Georgia, Athens, GA, March 5-6, 2016.
Discrete Models for the Simulation and Control of Gene Regulatory Networks, Joint Mathematics Meetings, MAA Invited Paper Session: Current Trends in Mathematical and Computational Biology, Seattle, Washington, January 6-9, 2016.
Molecular Network Control Through Boolean Canalization. IMA (Institute for Mathematics and its Applications) Workshop on Biological Systems and Networks, Minneapolis, MN, Nov 16-20, 2015.
Discrete Models for the Simulation and Control of Gene Regulatory Networks, Department Colloquium, Department of Mathematics, University of Dayton, Dayton, OH, Nov 12, 2015.
Control Methods for Boolean Networks, Eighth international Symposium on Biomathematics and Ecology: Education and Research (BEER 2015), MS1A: Algebraic and Discrete Methods in Mathematical Biology, Illinois State University in Normal, IL, Oct 9-11, 2015.
Molecular Network Control Through Boolean Canalization. Geometric and Topological Modeling of Biomolecules, Mathematical Biosciences Institute (MBI), Columbus, OH, Sept 28-Oct 2, 2015.
Optimal Control Methods for Stochastic Boolean Networks, Annual Meeting for The Society of Mathematical Biology, SMB minisymposium: Computing Intensive Modeling in Biomathematics, June 30-July 3, 2015, Atlanta, Georgia.
Optimal Control Methods for Stochastic Boolean Networks, Algebraic and Combinatorial Approaches in Systems Biology Conference, May 22-24, 2015, University of Connecticut Health Center, Farmington, CT.
Optimal Control Methods for Stochastic Gene Regulatory Networks, Joint Mathematics Meetings, AMS Special Session: Computing Intensive Modeling in Mathematical and Computational Biology, January 10-13, 2015, San Antonio, Texas.
An Optimal Control Framework for Stochastic Gene Regulatory Networks, SIAM Conference on the Life Sciences, minisymposium on Probabilistic methods in cell biology, Charlotte, North Carolina on August 4-7, 2014.
Discrete Models for Gene Regulatory Networks, Department of Mathematics, University of Kentucky, Lexington, KY, January 28, 2014.
Modeling Stochasticity and Variability in Gene Regulatory Networks with Applications for Optimal Control, Sixth International Symposium on Biomathematics and Ecology: Education and Research (BEER 2013), Marymount University, Arlington, VA, October 11-13, 2013.
Stochastic Discrete Dynamical Systems, Special Session on Applied Combinatorics, Congress of the Americas in Guanajuato, Mexico, August 5-9, 2013.
Stochastic Discrete Dynamical Systems, Minisymposium on The Dynamics of Discrete Bioregulatory Networks, The Society of Mathematical Biology Annual Meeting and Conference, Arizona State University, Tempe, AZ, June 10-13, 2013.
Discrete Models in Systems Biology. Algebra and Discrete Math (ADM) Seminar. Clemson University, Clemson, SC, Oct. 25, 2012.
Stochastic Discrete Dynamical Systems, Mathematical Biology and Ecology Seminar, Georgia Tech, Atlanta, GA, April 18, 2012.
Stochastic Discrete Dynamical Systems, AMS special session on Dynamics of complex networks, Washington, DC, March 17-18, 2012.
Understanding the effect of intrinsic noise in stability: a discrete approach. Workshop on Discrete and Topological Models in Molecular Biology, Tampa, FL, March 12-14, 2012.
A Stochastic Framework for Discrete Models in Systems Biology, SACNAS National Conference, Empowering Innovation and Synergy Through Diversity, San Jose, CA, October 27 – 30, 2011.