PUBLICATIONS

原著論文

1.  Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization

Daisuke Matsui#, Norifumi Muraki#, Ke Chen, Tomoya Mori, Aaron A. Ingram, Keiko Oike, Harald Gröger, Shigetoshi Aono, and Yasuhisa Asano

Journal of Inorganic Biochemistry, 230, (2022) DOI: 10.1016/j.jinorgbio.2022.111770

#equal contribution

2.  Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival

Megumi Nishinaga, Hiroshi Sugimoto, Yudai Nishitani, Seina Nagai, Satoru Nagatoishi, Norifumi Muraki, Takehiko Tosha, Kouhei Tsumoto, Shigetoshi Aono, Yoshitsugu Shiro, Hitomi Sawai

Communications Biology, 4(1), 467, (2021) DOI: 10.1038/s42003-021-01987-5.

3.  Structural Characterization of Y29F Mutant of Thermoglobin from a Hyperthermophilic Bacterium Aquifex aeolicus

Norifumi Muraki, Kouta Takeda, Dayeon Nam, Megumi Muraki, and Shigetoshi Aono

Chemistry Letters, 50(4), 603–606 (2021)

4.  X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.

Yusuke Ohnishi, Norifumi Muraki, Daiki Kiyota, Hideo Okumura, Seiki Baba, Yoshiaki Kawano, Takashi Kumasaka, Hideaki Tanaka, Genji Kurisu

Journal of Biochemistry, 167(6), 549-555 (2020)

5.  Kinetic and structural insight into a role of the re-face Tyr328 residue of the homodimer type ferredoxin-NADP+ oxidoreductase from Rhodopseudomonas palustris in the reaction with NADP+/NADPH.

Daisuke Seo #, Norifumi Muraki #, Genji Kurisu

Biochim Biophys Acta Bioenerg., 1861(3), 148140-148154, (2020)

#equal contribution

6.  Structural basis for the heme transfer reaction in heme uptake machinery from Corynebacteria.

Norifumi Muraki, Chihiro Kitatsuji, Yasunori Okamoto, Takasi Uchida, Koichiro Ishimori, Shigetoshi Aono

Chemical Communication (Cambridge) 55(92), 13864-13867 (2019)

7.  Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase.

Norifumi Muraki, Kentaro Ishii, Susumu Uchiyama, Satoru G. Itoh, Hisashi Okumura, Shigetoshi Aono

Communications Biology 18(2), 385-396 (2019)

8.  Crystal structure of the starch-binding domain of glucoamylase from Aspergillus niger.

Yousuke Suyama, Norifumi Muraki, Masami Kusunoki, Hideo Miyake

Acta Crystallographica Section F. Structural Biology Communications 73, 550-554 (2017)

9.  Structural characterization of heme environmental mutants of CgHmuT that shuttles heme molecules to heme transporters.

Norifumi Muraki, Chihiro Kitatsuji, Mariko Ogura, Takeshi Uchida, Koichiro Ishimori, Shigetoshi Aono

International Journal of Molecular Sciences 17(6), 829-836 (2016)

10.   A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.

Julian Esselborn, Norifumi Muraki, Kathrin Klein, Vera Engelbrecht, Nils Metzler-Nolte, Ulf-Peter Apfel, Eckhard Hofmann, Genji Kurisu, Thomas Happe

Chemical Science 7(2), 959-968 (2016)

11.   Structural basis for heme recognition by HmuT responsible for heme transport to the heme transporter in Corynebacterium glutamicum.

Norifumi Muraki, Shigetoshi Aono

Chemistry Letters 45(1), 24-26 (2016)

12.   X-ray structure and nuclear magnetic resonance analysis of the interaction sites of the Ga-substituted cyanobacterial ferredoxin.

Risa Mutoh #, Norifumi Muraki #, Kanako Shinmura, Hisako Kubota-Kawai, Young-Ho Lee, Marc M. Nowaczyk, Matthias Roegner, Toshiharu Hase, Takahisa Ikegami, Genji Kurisu

Biochemistry 54(39), 6052-6061 (2015)

#equal contribution

13.   Crystal structures of copper-depleted and copper-bound fungal pro-tyrosinase: Insights into endogenous cysteine-dependent copper incorporation.

Nobutaka Fujieda, Shintaro Yabuta, Takuya Ikeda, Takuji Oyama, Norifumi Muraki, Genji Kurisu, Shinobu Itoh

Journal of Biological Chemistry 288(30), 22128-22140 (2013)

14.   Concentration-dependent oligomerization of cross-linked complexes between ferredoxin and ferredoxin-NADP(+) reductase.

Yoko Kimata-Ariga, Hisako Kubota-Kawai, Young-Ho Lee, Norifumi Muraki, Takahisa Ikegami, Genji Kurisu, Toshiharu Hase

Biochemical and Biophysical Research Communications 434(4), 867-872 (2013)

15.   Structures of cyanobacteriochromes from phototaxis regulators AnPixJ and TePixJ reveal general and specific photoconversion mechanism.

Rei Narikawa, Takami Ishizuka, Norifumi Muraki, Tomoo Shiba, Genji Kurisu, Masahiko Ikeuchi

Proceedings of the National Academy of Sciences of the United States of America 110(3), 918-923 (2013)

16.   Cloning, expression, crystallization, and preliminary X-ray studies of the ferredoxin-NAD(P) plus reductase from the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.

Pasqual Liauw, Tomohiro Mashiba, Marta Kopczak, Katrin Wiegand, Norifumi Muraki, Hisako Kubota, Yusuke Kawano, Masahiko Ikeuchi, Toshiharu Hase, Matthias Roegner, Genji Kurisu

Acta Crystallographica Section F. Structural Biology Communications 68, 1048-1051 (2012)

17.   N-Terminal structure of maize ferredoxin:NADP(+) reductase determines recruitment into different thylakoid membrane complexes.

Manuel Twachtmann, Bianca Altmann, Norifumi Muraki, Ingo Voss, Satoshi Okutani, Genji Kurisu, Toshiharu Hase, Guy T. Hanke

Plant Cell 24(7), 2979-2991 (2012)

18.   Crystallization and preliminary X-ray studies of an electron-transfer complex of ferredoxin and ferredoxin-dependent glutamate synthase from the cyanobacterium Leptolyngbya boryana.

Kanako Shinmura, Norifumi Muraki, Ayako Yoshida, Toshiharu Hase, Genji Kurisu

Acta Crystallographica Section F. Structural Biology Communications 68, 324-327 (2012)

19.   Asymmetric dimeric structure of ferredoxin-NAD(P)(+) oxidoreductase from the green sulfur bacterium Chlorobaculum tepidum: Implications for binding ferredoxin and NADP(+).

Norifumi Muraki#, Daisuke Seo#, Tomoo Shiba, Takeshi Sakurai, Genji Kurisu

Journal of Molecular Biology 401(3), 403-414 (2010)

#equal contribution

20.   X-ray crystal structure of the light-independent protochlorophyllide reductase.

Norifumi Muraki#, Jiro Nomata#, Kozue Ebata, Tadashi Mizoguchi, Tomoo Shiba, Hitoshi Tamiaki, Genji Kurisu, Yuichi Fujita

Nature 465(7294), 110-124 (2010)

#equal contribution

21.   Crystallization and preliminary X-ray studies of the chromophore-binding domain of cyanobacteriochrome AnPixJ from
Anabaena sp PCC 7120.

Rei Narikawa, Norifumi Muraki, Tomoo Shiba, Masahiko Ikeuchi, Genji Kurisu

Acta Crystallographica Section F. Structural Biology Communications 65, 159-162 (2009)

22.   Crystallization and preliminary X-ray studies of ferredoxin-NAD(P)(+) reductase from Chlorobium tepidum.

Norifumi Muraki, Daisuke Seo, Tomoo Shiba, Takeshi Sakurai, Genji Kurisu

Acta Crystallographica Section F. Structural Biology Communications 64, 186-189 (2008)

著書

1. ヘムタンパク質の科学　～生理機能の理解とその展開に向けて～

(監修) 城 宜嗣、青野 重利、齋藤 正男

（株）エヌ・ティー・エス (2022) ISBN 978-4-86043-778-7 C3045

「1-2-5 アルドキシム脱水酵素」を分担執筆した。

総説

1. コリネバクテリアのヘム取り込みの仕組み

村木 則文

日本結晶学会誌, 62(2), 78-79 (2020)DOI: 10.5940/jcrsj.62.78.

2. ガリウム置換が可能にした光化学系I-フェレドキシン電子伝達複合体の結晶構造解析

河合(久保田) 寿子、村木 則文、田中 秀明、栗栖 源嗣

日本放射光学会誌, 31(6), 373-380 (2018)

3. A new biological function of heme as a signaling molecule

Norifumi Muraki, Chihiro Kitatsuji, Shigetoshi Aono

Journal of Porphyrins and Phthalocyanines 19(1-3), 9-20 (2015)

4. クロロフィル生合成系酵素と窒素固定酵素の共通構造基盤

村木 則文, 栗栖 源嗣, 野亦 次郎, 藤田 祐一

日本結晶学会誌, 53(2), 113-118 (2011) DOI: 10.5940/jcrsj.53.113

5. Chlorophyll biosynthesis: spotlight on protochlorophyllide reduction.

Christiane Reinbothe, Majida El Bakkouri, Frank Buhr, Norifumi Muraki, Jiro Nomata, Genji Kurisu, Yuichi Fujita, Steffen Reinbothe

Trends in Plant Science, 15(11), 614-624 (2010) DOI: 10.1016/j.tplants.2010.07.002

解説記事

1. 「ケイ素生物はつくれるか? ヘムタンパク質を使った不斉Si-Hカルベン挿入反応」

村木 則文

化学 (化学同人), 72(9), 61-62 (2017)

2. 「原子レベルで明らかになった巨大タンパク質ボルトの構造」

村木 則文

ファルマシア (日本薬学会), 45(11), 1138-1139 (2009) DOI: 10.14894/faruawpsj.45.11_1138