Predicting Alzheimer's Cognitive Resilience Score: A Comparative Study of Machine Learning Models Using RNA-seq Data
Authors: Akihiro Kitani, Yusuke Matsui
Year: 2024 Aug 26
Journal: N/A
Volume(Issue) Pages: N/A
HuTAge: a Comprehensive Human Tissue- and Cell-specific Ageing Signature Atlas
Authors: Koichi Himori, Zhang Bingyuan, Kazuki Hatta, Yusuke Matsui
Year: 2024 Aug 9
Journal: N/A
Volume(Issue) Pages: N/A
Toward a Systems Glycogenomics Approach to Understanding Diseases
Authors: Yusuke Matsui
Year: 2024 Aug
Journal: Glycoforum
Volume(Issue) Pages: 27(4) A12
A Computational Approach to Interpreting the Embedding Space of Dimension Reduction
Authors: Bingyuan Zhang, Kohei Uno, Hayata Kodama, Koichi Himori, Yusuke Matsui
Year: 2024 Jun 27
Journal: N/A
Volume(Issue) Pages: N/A
Integrative network analysis reveals novel moderators of Aβ-Tau interaction in Alzheimer's disease
Authors: Akihiro Kitani, Yusuke Matsui
Year: 2025 Apr 4
Journal: Alzheimer's Research & Therapy
Volume(Issue) volume 17 (1): 70
Evaluating Desk-Assisted Standing Techniques for Simulated Pregnant Conditions: An Experimental Study Using a Maternity-Simulation Jacket
Authors: Kohei Uno, Kako Tsukioka, Hibiki Sakata, Tomoe Inoue-Hirakawa, Yusuke Matsui
Year: 2024 May 1
Journal: Healthcare
Volume(Issue) Pages: 12(9) 931–931
Systematic Identification of Exercise-Induced Anti-Aging Processes Involving Intron Retention
Authors: Hayata Kodama, Hirotaka Ijima, Yusuke Matsui
Year: 2024 Apr 28
Journal: N/A
Volume(Issue) Pages: N/A
BRAFV600E Promotes Anchorage-Independent Growth but Inhibits Anchorage-Dependent Growth in hTERT / Cdk4-Immortalized Normal Human Bronchial Epithelial Cells
Authors: Nao Muraki, Nozomi Kawabe, Ayano Ohashi, Kanna Umeda, Masahito Katsuda, Aya Tomatsu, Mikina Yoshida, Kazuki Komeda, John D. Minna, Ichidai Tanaka, Masahiro Morise, Miyoko Matsushima, Yusuke Matsui, Tsutomu Kawabe, Mitsuo Sato
Year: 2024 Apr
Journal: Experimental Cell Research
Volume(Issue) Pages: 114057–114057
Single-Cell Glycogenomics Deciphers Links Between Altered Transcriptional Regulation and Aberrant Glycosylation in Alzheimer’s Disease
Authors: Yusuke Matsui, Akira Togayachi, Kazuma Sakamoto, Kiyohiko Angata, Kenji Kadomatsu, Shoko Nishihara
Year: 2023 Dec 27
Journal: N/A
Volume(Issue) Pages: N/A
Network-Based Systematic Dissection of Exercise-Induced Inhibition of Myosteatosis in Older Individuals
Authors: Hirotaka Iijima, Fabrisia Ambrosio, Yusuke Matsui
Year: 2023 Dec 15
Journal: The Journal of Physiology
Volume(Issue) Pages: N/A
Unbiased Estimation of the Population-Level Motor Module
Authors: Yusuke Matsui, Kohei Uno, Ippei Nojima
Year: 2023 Jun 29
Journal: N/A
Volume(Issue) Pages: N/A
Pgc-1α Is an Exercise-Responsive Regulator of Myosteatosis in Older Individuals
Authors: Hirotaka Iijima, Fabrisia Ambrosio, Yusuke Matsui
Year: 2023 Feb 8
Journal: N/A
Volume(Issue) Pages: N/A
Network-Based Cytokine Inference Implicates Oncostatin M as a Driver for Inflammation Phenotype of Knee Osteoarthritis
Authors: Hirotaka Iijima, Fan Zhang, Fabrisia Ambrosio, Yusuke Matsui
Year: 2023 Jan 25
Journal: N/A
Volume(Issue) Pages: N/A
Types of Anomalies in Two-Dimensional Video-Based Gait Analysis in Uncontrolled Environments
Authors: Yuki Sugiyama, Kohei Uno, Yusuke Matsui
Year: 2023 Jan 19
Journal: PLOS Computational Biology
Volume(Issue) Pages: 19(1) e1009989–e1009989
Utilization and Challenges of Data Science and AI in Physical Therapy Education
(English translation of the original Japanese title)
Authors: Yusuke Matsui
Year: 2022 Apr
Journal: Rigaku Ryoho (Physical Therapy)
Volume(Issue) Pages: 39(4) 336–342
Meta-Analysis Integrated with Multi-Omics Data Analysis to Elucidate Pathogenic Mechanisms of Age-Related Knee Osteoarthritis in Mice
Authors: Hirotaka Iijima, Gabrielle Gilmer, Kai Wang, Sruthi Sivakumar, Christopher Evans, Yusuke Matsui, Fabrisia Ambrosio
Year: 2022 Jan 3
Journal: The Journals of Gerontology. Series A, Biological Sciences and Medical Sciences
Volume(Issue) Pages: 77(7) 1321–1334
Pan-Cancer Methylome Analysis for Cancer Diagnosis and Classification of Cancer Cell of Origin
Authors: Dai Shimizu, Kenzui Taniue, …, Koshi Mimori
Year: 2021 Nov 8
Journal: Cancer Gene Therapy
Volume(Issue) Pages: 29(5) 428–436
Increased BUB1B/BUBR1 Expression Contributes to Aberrant DNA Repair Activity Leading to Resistance to DNA-Damaging Agents
Authors: Kazumasa Komura, Teruo Inamoto, …, Haruhito Azuma
Year: 2021 Sep 20
Journal: Oncogene
Volume(Issue) Pages: 40(43) 6210–6222
RoDiCE: Robust Differential Protein Co-expression Analysis for Cancer Complexome
Authors: Yusuke Matsui, Yuichi Abe, Kohei Uno, Satoru Miyano
Year: 2021 Sep 16
Journal: Bioinformatics (Oxford, England)
Volume(Issue) Pages: N/A
Pre-Stimulus Alpha Oscillation and Post-Stimulus Cortical Activity Differ in Localization Between Consciously Perceived and Missed Near-Threshold Somatosensory Stimuli
Authors: Jun-Ichi Uemura, Aiko Hoshino, Go Igarashi, Yusuke Matsui, Makoto Chishima, Minoru Hoshiyama
Year: 2021 Aug
Journal: The European Journal of Neuroscience
Volume(Issue) Pages: 54(4) 5518–5530
An In Vitro Coculture System of Human Peripheral Blood Mononuclear Cells with Hepatocellular Carcinoma-Derived Cells for Predicting Drug-Induced Liver Injury
Authors: Shingo Oda, Yuka Uchida, Michael D. Aleo, Petra H. Koza-Taylor, Yusuke Matsui, Masanori Hizue, Lisa D. Marroquin, Jessica Whritenour, Eri Uchida, Tsuyoshi Yokoi
Year: 2020 Aug 20
Journal: Archives of Toxicology
Volume(Issue) Pages: N/A
EXOSC9 Depletion Attenuates P-Body Formation, Stress Resistance, and Tumorigenicity of Cancer Cells
Authors: Seiko Yoshino, Yusuke Matsui, Yuya Fukui, Masahide Seki, Kiyoshi Yamaguchi, Akane Kanamori, Yurika Saitoh, Teppei Shimamura, Yutaka Suzuki, Yoichi Furukawa, Shuichi Kaneko, Motoharu Seiki, Yoshinori Murakami, Jun-Ichiro Inoue, Takeharu Sakamoto
Year: 2020 Jun 9
Journal: Scientific Reports
Volume(Issue) Pages: 10(1) 9275–9275
Coordinated Demethylation of H3K9 and H3K27 Is Required for Rapid Inflammatory Responses of Endothelial Cells
Authors: Yoshiki Higashijima, Yusuke Matsui, Teppei Shimamura, Ryo Nakaki, Nao Nagai, Shuichi Tsutsumi, Yohei Abe, Verena M. Link, Mizuko Osaka, Masayuki Yoshida, Ryo Watanabe, Toshihiro Tanaka, Akashi Taguchi, Mai Miura, Xiaoan Ruan, Guoliang Li, Tsuyoshi Inoue, Masaomi Nangaku, Hiroshi Kimura, Tetsushi Furukawa, Hiroyuki Aburatani, Youichiro Wada, Yijun Ruan, Christopher K. Glass, Yasuharu Kanki
Year: 2020 Apr 1
Journal: The EMBO Journal
Volume(Issue) Pages: 39(7) e103949
Pathogenic Epigenetic Consequences of Genetic Alterations in IDH-Wild-Type Diffuse Astrocytic Gliomas
Authors: Fumiharu Ohka, Keiko Shinjo, Shoichi Deguchi, Yusuke Matsui, Yusuke Okuno, Keisuke Katsushima, Miho Suzuki, Akira Kato, Noboru Ogiso, Akane Yamamichi, Kosuke Aoki, Hiromichi Suzuki, Shinya Sato, Nirmala Arul Rayan, Shyam Prabhakar, Jonathan Göke, Teppei Shimamura, Reo Maruyama, Satoru Takahashi, Akio Suzumura, Hiroshi Kimura, Toshihiko Wakabayashi, Hui Zong, Atsushi Natsume, Yutaka Kondo
Year: 2019 Oct 1
Journal: Cancer Research
Volume(Issue) Pages: 79(19) 4814–4827
A Network of Networks Approach for Modeling Interconnected Brain Tissue-Specific Networks
Authors: Kawakubo H, Matsui Y, Kushima I, Ozaki N, Shimamura T
Year: 2019 Sep
Journal: Bioinformatics (Oxford, England)
Volume(Issue) Pages: 35(17) 3092–3101
Tumor Subclonal Progression Model for Cancer Hallmark Acquisition
Authors: Y. Matsui, S. Miyano, T. Shimamura
Year: 2019
Journal: Lecture Notes in Bioinformatics 10834
Volume(Issue) Pages: 115–123
GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics
Authors: T. Shimamura, Y. Matsui, S. Miyano
Year: 2019
Journal: Lecture Notes in Bioinformatics 10834
Volume(Issue) Pages: 124–137
A Temporal Shift of the Evolutionary Principle Shaping Intratumor Heterogeneity in Colorectal Cancer
Authors: Tomoko Saito, Atsushi Niida, Ryutaro Uchi, Hidenari Hirata, Hisateru Komatsu, Shotaro Sakimura, Shuto Hayashi, Sho Nambara, Yosuke Kuroda, Shuhei Ito, Hidetoshi Eguchi, Takaaki Masuda, Keishi Sugimachi, Taro Tobo, Haruto Nishida, Tsutomu Daa, Kenichi Chiba, Yuichi Shiraishi, Tetsuichi Yoshizato, Masaaki Kodama, Tadayoshi Okimoto, Kazuhiro Mizukami, Ryo Ogawa, Kazuhisa Okamoto, Mitsutaka Shuto, Kensuke Fukuda, Yusuke Matsui, Teppei Shimamura, Takanori Hasegawa, Yuichiro Doki, Satoshi Nagayama, Kazutaka Yamada, Mamoru Kato, Tatsuhiro Shibata, Masaki Mori, Hiroyuki Aburatani, Kazunari Murakami, Yutaka Suzuki, Seishi Ogawa, Satoru Miyano, Koshi Mimori
Year: 2018 Jul 23
Journal: Nature Communications
Volume(Issue) Pages: 9(1) 2884–2884
ER Stress Signaling Promotes the Survival of Cancer “Persister Cells” Tolerant to EGFR Tyrosine Kinase Inhibitors
Authors: Hideki Terai, Shunsuke Kitajima, Danielle S. Potter, Yusuke Matsui, Laura Gutierrez Quiceno, Ting Chen, Tae-Jung Kim, Maria Rusan, Tran C. Thai, Federica Piccioni, Katherine A. Donovan, Nicholas Kwiatkowski, Kunihiko Hinohara, Guo Wei, Nathanael S. Gray, Eric S. Fischer, Kwok-Kin Wong, Teppei Shimamura, Anthony Letai, Peter S. Hammerman, David A. Barbie
Year: 2018 Feb 15
Journal: Cancer Research
Volume(Issue) Pages: 78(4) 1044–1057
Identification of Cardiomyocyte-Fated Progenitors from Human-Induced Pluripotent Stem Cells Marked with CD82
Authors: Masafumi Takeda, Yasuharu Kanki, Hidetoshi Masumoto, Shunsuke Funakoshi, Takeshi Hatani, Hiroyuki Fukushima, Akashi Izumi-Taguchi, Yusuke Matsui, Teppei Shimamura, Yoshinori Yoshida, Jun K. Yamashita
Year: 2018
Journal: Cell Reports
Volume(Issue) Pages: 22(2) 546–556
A New Era of Hybrid Science: Linking Life Science and Data Science – Understanding the Molecular Mechanism of Synergy Between EGFR-TKI and Transcription Inhibitors by Genome-Wide CRISPR Screening
(English translation of original Japanese title)
Authors: Hideki Terai, Danielle Potter, Shunsuke Kitajima, Yusuke Matsui, Tae-Jung Kim, Maria Rusan, Tran Thai, Federica Piccioni, Katherine Donovan, Nicholas Kwiatkowski, Kunihiko Hinohara, Guo Wei, Nathanael Gray, Eric Fischer, Teppei Shimamura, Anthony Letai, Peter Hammerman, David Barbie
Year: 2017 Dec (conference presentation)
Journal: N/A
Volume(Issue) Pages: N/A
phyC: Clustering Cancer Evolutionary Trees
Authors: Yusuke Matsui, Atsushi Niida, Ryutaro Uchi, Koshi Mimori, Satoru Miyano, Teppei Shimamura
Year: 2017 May
Journal: PLOS Computational Biology
Volume(Issue) Pages: 13(5) e1005509
(DM)-M-3: Detection of Differential Distributions of Methylation Levels
Authors: Yusuke Matsui, Masahiro Mizuta, Satoshi Ito, Satoru Miyano, Teppei Shimamura
Year: 2016 Aug
Journal: Bioinformatics
Volume(Issue) Pages: 32(15) 2248–2255
NECAB3 Promotes Activation of Hypoxia-Inducible Factor-1 During Normoxia and Enhances Tumorigenicity of Cancer Cells
Authors: Hiroki J. Nakaoka, Toshiro Hara, Seiko Yoshino, Akane Kanamori, Yusuke Matsui, Teppei Shimamura, Hiroshi Sato, Yoshinori Murakami, Motoharu Seiki, Takeharu Sakamoto
Year: 2016 Mar
Journal: Scientific Reports
Volume(Issue) Pages: 6 22784
Classification of Customers in a Group-Buying Coupon Site and Analysis of Purchasing Tendencies by Group
(English translation of original Japanese title)
Authors: Chito Igarashi, Yusuke Matsui, Hiroyuki Minami, Masahiro Mizuta
Year: 2015
Journal: Journal of the Japan Society of Computational Statistics
Volume(Issue) Pages: 28(2) 139–146
Proposal of Moving Function k-Means Method and Its Application
(English translation of original Japanese title)
Authors: Yusuke Matsui, Yuriko Komiya, Hiroyuki Minami, Masahiro Mizuta
Year: 2015
Journal: Theory and Applications of Data Analysis
Volume(Issue) Pages: 4(1) 43–55
A Method for Detecting Abnormal Regions in Multi-Dimensional Functional Data and Its Application to Sensing Data
(English translation of original Japanese title)
Authors: Yusuke Matsui, Yuriko Komiya, Hiroyuki Minami, Masahiro Mizuta
Year: 2014
Journal: Journal of the Japan Society of Computational Statistics
Volume(Issue) Pages: 27(2) 65–77
Symbolic Cluster Analysis for Distribution-Valued Dissimilarity
Authors: Matsui Y, Minami H, Mizuta M
Year: 2014
Journal: Communications for Statistical Applications and Methods
Volume(Issue) Pages: 21(3) 225–234
SDA for Mixed-Type Data and Its Application to Analysis of Environmental Radio Activity Level Data
Authors: Matsui Y, Mizuta M
Year: 2014
Journal: COMPSTAT2014
Volume(Issue) Pages: 673–680
Comparison of Two Distribution-Valued Dissimilarities and Its Application for Symbolic Clustering
Authors: Yusuke Matsui, Yuriko Komiya, Hiroyuki Minami, Masahiro Mizuta
Year: 2014
Journal: Studies in Classification, Data Analysis, and Knowledge Organization
Volume(Issue) Pages: 46 37–46