Search this site
Embedded Files
Landscape Genetics - DGS 2026
  • Landscape Genetics - DGS 2026
  • Lectures & Tutorials
    • Landscape Genetics - Dr. Niko Balkenhol
    • Population Genetics - Dr. Lisette Waits
    • Adaptation and Quantitative Genetics - Dr. Katalin Csilléry
    • Landscape Ecology Basics - Dr. Sam Cushman
    • Metapopulation Genetics - Dr. Michelle DiLeo
    • Study Design - Dr. Marie-Josée Fortin
    • Spatial Analysis - Dr. Helene Wagner & Marie-Josée Fortin
    • Simulation Modeling - Dr. Travis Seaborn
    • Assignment & Clustering - Dr. Sean Schoville
    • Resistance Surface Modeling - Dr. Bill Peterman
    • Hypothesis Testing & Model Selection - Dr. Melanie Murphy
    • Graph Theory & Networks - Dr. Melanie Murphy
    • Adaptive Landscape Genetics - Dr. Stéphanie Manel
    • Plants in Landscape Genetics - Dr. Yessica Rico
    • Aquatic Systems - Dr. Meryl Mims
    • Group Project Presentations
    • Bringing it all together & eDNA- Dr. Caren Goldberg
    • Genetics Tutorial
    • Landscape Ecology Tutorial
    • Landscape Data Tutorial
  • R Computer Labs
  • Textbook
  • Calendar
  • Data Resources
  • Q & A Forum
  • Group Projects
  • Synthesis meeting draft schedule
  • Answer Keys
Landscape Genetics - DGS 2026
  • Landscape Genetics - DGS 2026
  • Lectures & Tutorials
    • Landscape Genetics - Dr. Niko Balkenhol
    • Population Genetics - Dr. Lisette Waits
    • Adaptation and Quantitative Genetics - Dr. Katalin Csilléry
    • Landscape Ecology Basics - Dr. Sam Cushman
    • Metapopulation Genetics - Dr. Michelle DiLeo
    • Study Design - Dr. Marie-Josée Fortin
    • Spatial Analysis - Dr. Helene Wagner & Marie-Josée Fortin
    • Simulation Modeling - Dr. Travis Seaborn
    • Assignment & Clustering - Dr. Sean Schoville
    • Resistance Surface Modeling - Dr. Bill Peterman
    • Hypothesis Testing & Model Selection - Dr. Melanie Murphy
    • Graph Theory & Networks - Dr. Melanie Murphy
    • Adaptive Landscape Genetics - Dr. Stéphanie Manel
    • Plants in Landscape Genetics - Dr. Yessica Rico
    • Aquatic Systems - Dr. Meryl Mims
    • Group Project Presentations
    • Bringing it all together & eDNA- Dr. Caren Goldberg
    • Genetics Tutorial
    • Landscape Ecology Tutorial
    • Landscape Data Tutorial
  • R Computer Labs
  • Textbook
  • Calendar
  • Data Resources
  • Q & A Forum
  • Group Projects
  • Synthesis meeting draft schedule
  • Answer Keys
  • More
    • Landscape Genetics - DGS 2026
    • Lectures & Tutorials
      • Landscape Genetics - Dr. Niko Balkenhol
      • Population Genetics - Dr. Lisette Waits
      • Adaptation and Quantitative Genetics - Dr. Katalin Csilléry
      • Landscape Ecology Basics - Dr. Sam Cushman
      • Metapopulation Genetics - Dr. Michelle DiLeo
      • Study Design - Dr. Marie-Josée Fortin
      • Spatial Analysis - Dr. Helene Wagner & Marie-Josée Fortin
      • Simulation Modeling - Dr. Travis Seaborn
      • Assignment & Clustering - Dr. Sean Schoville
      • Resistance Surface Modeling - Dr. Bill Peterman
      • Hypothesis Testing & Model Selection - Dr. Melanie Murphy
      • Graph Theory & Networks - Dr. Melanie Murphy
      • Adaptive Landscape Genetics - Dr. Stéphanie Manel
      • Plants in Landscape Genetics - Dr. Yessica Rico
      • Aquatic Systems - Dr. Meryl Mims
      • Group Project Presentations
      • Bringing it all together & eDNA- Dr. Caren Goldberg
      • Genetics Tutorial
      • Landscape Ecology Tutorial
      • Landscape Data Tutorial
    • R Computer Labs
    • Textbook
    • Calendar
    • Data Resources
    • Q & A Forum
    • Group Projects
    • Synthesis meeting draft schedule
    • Answer Keys

Study Design - Dr. Marie-Josée Fortin

Lecture Synopsis

This lecture will introduce the basic notion of sampling design to capture the landscape/environment covariates that could affect genetic diversity/structure. Then, I will present how four analysis levels can be used to analyse landscape genetic data. Finally, I will introduce the most commonly use spatial analysis methods in ecology and landscape genetics.

Readings

    • Chapter 4 of textbook: Balkenhol N, M-J Fortin. 2016. Basics of study design: Sampling landscape heterogeneity and genetic variation for landscape genetic studies.  

    • Chapter 5 of textbook: Wagner HH, M-J Fortin. 2016. Basics of spatial data analysis: Linking landscape and genetic data for landscape genetic studies.


Optional readings and references:

  • Naujokaitis-Lewis I, Y Rico, J Lovell, M-J Fortin, M Murphy. 2013. Implications of incomplete networks on estimation of landscape genetic connectivity. Conservation Genetics, 14: 287-298.

  • Wagner HH, M-J Fortin. 2005. Spatial analysis of landscapes: concepts and statistics. Ecology, 86: 1975-1987.

  • Dauphin et al. 2023. Re-thinking the environment in landscape genomics. TREE 38(3) 261-274.


Lecture Slides

Week 6 Slides

Lecture Video



Exercises

    • The optional laboratory exercises for this week can be accessed here: https://bookdown.org/hhwagner1/LandGenCourse_book/Week5.html

  • Conceptual exercise for Week 6  (Please ignore that it's labelled Week 5; we had to switch some weeks around)

Feedback

Please use this form to provide us with any feedback on this lecture.  These comments are collected anonymously and will be used to improve this course for the next time it is offered.

Google Sites
Report abuse
Page details
Page updated
Google Sites
Report abuse