Publication
§Co-first authors, *Co-corresponding author(s)
【原著論文 Papers】
Protocol for high-quality single-cell RNA-seq from tissue sections with DRaqL.
Ikeda H, Miyao S, Yamada N, Sugimoto S, Kimura F, Kurimoto K.
STAR Protoc. 2024 May 2;5(2):103050. doi: 10.1016/j.xpro.2024.103050. Online ahead of print.
PMID: 38703368
https://pubmed.ncbi.nlm.nih.gov/38703368/
DPPA3 facilitates genome-wide DNA demethylation in mouse primordial germ cells.
Toriyama K, Au Yeung WK, Inoue A, Kurimoto K, Yabuta Y, Saitou M,
Nakamura T, Nakano T, Sasaki H.
BMC Genomics. 2024 Apr 5;25(1):344. doi: 10.1186/s12864-024-10192-7.
PMID: 38580899
https://www.ncbi.nlm.nih.gov/pubmed/38580899
Epigenetic regulation limits competence of pluripotent stem cell-derived oocytes.
Aizawa E, Ozonov EA, Kawamura YK, Dumeau CE, Nagaoka S, Kitajima TS, Saitou M, Peters AH, Wutz A.
EMBO J. 2023 Oct 18:e113955. doi: 10.15252/embj.2023113955. Online ahead of print.
PMID: 37850882
https://www.embopress.org/doi/full/10.15252/embj.2023113955
High-quality single-cell transcriptomics from ovarian histological sections during folliculogenesis
Hiroki Ikeda, Shintaro Miyao, So Nagaoka, Tomoya Takashima, Sze-Ming Law, Takuya Yamamoto, Kazuki Kurimoto
Life Science Alliance, 2023 18 Sept; vol. 6 no. 11 e202301929
DOI: 10.26508/lsa.202301929, PubMed 37722727, Online ISSN 2575-1077
https://www.life-science-alliance.org/content/6/11/e202301929
プレスリリース Press Release
・日本語版
https://www.naramed-u.ac.jp/university/kenkyu-sangakukan/oshirase/r5nendo/draql.html
・English version
https://www.eurekalert.org/news-releases/1001935
Rat post-implantation epiblast-derived pluripotent stem cells produce functional germ cells
Kenyu Iwatsuki, Mami Oikawa, Hisato Kobayashi, Christopher A. Penfold, Makoto Sanbo, Takuya Yamamoto, Shinichi Hochi, Kazuki Kurimoto, Masumi Hirabayashi, and Toshihiro Kobayashi
Cell Reports Methods, 2023, doi: 10.1016/j.crmeth.2023.100542
Conservation and divergence of canonical and non-canonical imprinting in murids.
Richard Albert J, Kobayashi T, Inoue A, Monteagudo-Sánchez A, Kumamoto S, Takashima T, Miura A, Oikawa M, Miura F, Takada S, Hirabayashi M, Korthauer K, Kurimoto K, Greenberg MVC, Lorincz M, Kobayashi H.
Genome Biol. 2023 Mar 14;24(1):48. doi: 10.1186/s13059-023-02869-1.
PMID: 36918927
https://pubmed.ncbi.nlm.nih.gov/36918927/
プレスリリース（リンク先：https://www.naramed-u.ac.jp/university/kenkyu-sangakukan/oshirase/r4nendo/genome.html)
ADAD2 functions in spermiogenesis and piRNA biogenesis in mice.
Lu Y, Nagamori I, Kobayashi H, Kojima-Kita K, Shirane K, Chang HY, Nishimura T, Koyano T, Yu Z, Castañeda JM, Matsuyama M, Kuramochi-Miyagawa S, Matzuk MM, Ikawa M.
Andrology. 2023 Jan 25. doi: 10.1111/andr.13400. Online ahead of print.
PMID: 36698249
https://pubmed.ncbi.nlm.nih.gov/36698249/
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming
Serena F Generoso, Maria Victoria Neguembor, Elliot A Hershberg, Ruslan I Sadreyev, Kazuki Kurimoto, Yukihiro Yabuta, Raffaele Ricci, Pauline, Audergon, Moritz Bauer, Mitinori Saitou, Konrad Hochedlinger, Brian J Beliveau, Maria Pia Cosma, Jeannie T Lee, Bernhard Payer
Proc Natl Acad Sci U S A. 2023 Jan 24;120(4):e2213810120. doi: 10.1073/pnas.2213810120. Epub 2023 Jan 20.
<Preprint> Histology-associated transcriptomic heterogeneity in ovarian folliculogenesis revealed by quantitative single-cell RNA-sequencing for tissue sections with DRaqL Hiroki Ikeda, Shintaro Miyao, So Nagaoka, Takuya Yamamoto, Kazuki Kurimoto
doi: https://doi.org/10.1101/2022.12.14.520513
https://www.biorxiv.org/content/10.1101/2022.12.14.520513v1
→Update at Sept 18, 2023:
High-quality single-cell transcriptomics from ovarian histological sections during folliculogenesis
Hiroki Ikeda, Shintaro Miyao, So Nagaoka, Tomoya Takashima, Sze-Ming Law, Takuya Yamamoto, Kazuki Kurimoto
Life Science Alliance, 18 September 2023, DOI: 10.26508/lsa.202301929
https://www.life-science-alliance.org/content/6/11/e202301929
Upregulated Ribosomal Pathway Impairs Follicle Development in a Polycystic Ovary Syndrome Mouse Model: Differential Gene Expression Analysis of Oocytes.
Nakanishi N, Osuka S, Kono T, Kobayashi H, Ikeda S, Bayasula B, Sonehara R, Murakami M, Yoshita S, Miyake N, Muraoka A, Kasahara Y, Murase T, Nakamura T, Goto M, Iwase A, Kajiyama H.
Reprod Sci. 2022 Oct 4. doi: 10.1007/s43032-022-01095-7. PMID:36194357
https://pubmed.ncbi.nlm.nih.gov/36194357/
https://link.springer.com/article/10.1007/s43032-022-01095-7
Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu pufferfish.
Kabir A, Ieda R, Hosoya S, Fujikawa D, Atsumi K, Tajima S, Nozawa A, Koyama T, Hirase S, Nakamura O, Kadota M, Nishimura O, Kuraku S, Nakamura Y, Kobayashi H, Toyoda A, Tasumi S, Kikuchi K. Proc Natl Acad Sci U S A. 2022 Jun 7;119(23):e2121469119. doi: 10.1073/pnas.2121469119.
PMID: 35658077
https://pubmed.ncbi.nlm.nih.gov/35658077/
https://www.pnas.org/doi/abs/10.1073/pnas.2121469119
Controlled X-chromosome dynamics defines meiotic potential of female mouse in vitro germ cells.
Severino J, Bauer M, Mattimoe T, Arecco N, Cozzuto L, Lorden P, Hamada N, Nosaka Y, Nagaoka SI, Audergon P, Tarruell A, Heyn H, Hayashi K, Saitou M, Payer B.
EMBO J. 2022 May 23:e109457. doi:10.15252/embj.2021109457. Epub ahead of print.
PMID: 35603814. https://www.embopress.org/doi/full/10.15252/embj.2021109457
Functional primordial germ cell-like cells from pluripotent stem cells in rats.
Oikawa M, Kobayashi H, Sanbo M, Mizuno N, Iwatsuki K, Takashima T, Yamauchi K, Yoshida F, Yamamoto T, Shinohara T, Nakauchi H, Kurimoto K, Hirabayashi M, Kobayashi T. Science. 2022; 376(6589):176-179. doi: 10.1126/science.abl4412.PMID: 35389778
https://pubmed.ncbi.nlm.nih.gov/35389778/
https://www.science.org/doi/abs/10.1126/science.abl4412?af=R
Law SM, Akizuki S, Morinobu A, Ohmura K. A case of refractory systemic lupus erythematosus with monocytosis exhibiting somatic KRAS mutation.
Inflammation and Regeneration. 42, 10 (2022). https://doi.org/10.1186/s41232-022-00195-w
Yoshida A, Taoka K, Hosaka A, Tanaka K, Kobayashi H, Muranaka T, Toyooka K, Oyama T, Tsuji H. Characterization of Frond and Flower Development and Identification of FT and FD Genes From Duckweed Lemna aequinoctialis Nd. Front. Plant Sci. (2021) 12:697206. doi:
https://doi.org/10.3389/fpls.2021.697206
Deciphering two rounds of cell lineage segregations during bovine preimplantation development.
Akizawa H, Saito S, Kohri N, Furukawa E, Hayashi Y, Bai H, Nagano M, Yanagawa Y, Tsukahara H, Takahashi M, Kagawa S, Kawahara-Miki R, Kobayashi H, Kono T, Kawahara M.
FASEB J. 2021; 35(10):e21904. doi: 10.1096/fj.202002762RR.
https://pubmed.ncbi.nlm.nih.gov/34569650/
DMRT1-mediated reprogramming drives development of cancer resembling human germ cell tumors with features of totipotency.
Taguchi J, Shibata H, Kabata M, Kato M, Fukuda K, Tanaka A, Ohta S, Ukai T, Mitsunaga K, Yamada Y, Nagaoka SI, Yamazawa S, Ohnishi K, Woltjen K, Ushiku T, Ozawa M, Saitou M, Shinkai Y, Yamamoto T, Yamada Y.
Nat Commun. 2021 Aug 19;12(1):5041. doi: 10.1038/s41467-021-25249-4.PMID: 34413299
https://www.nature.com/articles/s41467-021-25249-4
Dynamics of transcription-mediated conversion from euchromatin to facultative heterochromatin at the Xist promoter by Tsix.
Ohhata T, Yamazawa K, Miura-Kamio A, Takahashi S, Sakai S, Tamura Y, Uchida C, Kitagawa K, Niida H, Hiratani I, Kobayashi H, Kimura H, Wutz A, Kitagawa M.
Cell Rep. 2021; 34(13):108912. doi: 10.1016/j.celrep.2021.108912.PMID: 33789104 https://pubmed.ncbi.nlm.nih.gov/33789104/
Filopodium-derived vesicles produced by MIM enhance the migration ofrecipient cells
Tamako Nishimura, Takuya Oyama, Hooi Ting Hu, Toshifumi Fujioka, Kyoko Hanawa-Suetsugu, Kazutaka Ikeda, Sohei Yamada, Hiroki Kawana, Daisuke Saigusa, Hiroki Ikeda, Rie Kurata, Kayoko Oono-Yakura, Manabu Kitamata, Kazuki Kida, Tomoya Hikita, Kiyohito Mizutani, Kazuma Yasuhara, Yuko Mimori-Kiyosue, Chitose Oneyama, Kazuki Kurimoto, Yoichiroh Hosokawa, Junken Aoki, Yoshimi Takai, Makoto Arita, Shiro Suetsugu
Dev Cell, 2021 Mar 22;56(6):842-859.e8.doi:10.1016/j.devcel.2021.02.029, https://pubmed.ncbi.nlm.nih.gov/33756122/
Paternal age affects offspring via an epigenetic mechanism involving REST/NRSF.
Yoshizaki K, Kimura R, Kobayashi H, Oki S, Kikkawa T, Mai L, Koike K, Mochizuki K, Inada H, Matsui Y, Kono T, Osumi N.
EMBO Rep. 2021; e51524. doi: 10.15252/embr.202051524.
Cyclosporin A and FGF signaling support the proliferation/survival of mouse primordial germ cell-like cells in vitro.
Ohta, H., Yabuta, Y., Kurimoto, K., Nakamura, T., Murase, Y., Yamamoto, T., and Saitou, M.,
Biol Reprod. 2021 Feb 11;104(2):344-360.doi: 10.1093/biolre/ioaa195. https://www.ncbi.nlm.nih.gov/pubmed/33079185
ZGLP1 is a determinant for the oogenic fate in mice
So I. Nagaoka, Fumio Nakaki, Hidetaka Miyauchi, Yoshiaki Nosaka, Hiroshi Ohta, Yukihiro Yabuta, Kazuki Kurimoto, Katsuhiko Hayashi, Tomonori Nakamura, Takuya Yamamoto1, Mitinori Saitou
Science 13 Feb 2020:eaaw4115 DOI: 10.1126/science.aaw4115
Maternal DNMT3A-dependent de novo methylation of the paternal genome inhibits gene expression in the early embryo.
Richard Albert J, Au Yeung WK, Toriyama K, Kobayashi H, Hirasawa R, Brind'Amour J, Bogutz A, Sasaki H, Lorincz M.
Nat Commun. 2020; 11(1):5417. doi: 10.1038/s41467-020-19279-7.
Germline development in rat revealed by visualization and deletion of Prdm14.
§Kobayashi T, §Kobayashi H, Goto T, Takashima T, Oikawa M, Ikeda H, Terada R, Yoshida F, Sanbo M, Nakauchi H, Kurimoto K, Hirabayashi M. Development. 2020 Jan 30. pii: dev.183798. doi: 10.1242/dev.183798.
Evolution of imprinting via lineage-specific insertion of retroviral promoters.
§Bogutz AB, §Brind'Amour J, §Kobayashi H, Jensen KN, Nakabayashi K, Imai H, Lorincz MC, Lefebvre L.
Nat Commun. 2019; 10(1):5674. doi: 10.1038/s41467-019-13662-9.
Food-Derived Compounds Apigenin and Luteolin Modulate mRNA Splicing of Introns with Weak Splice Sites.
Kurata M, Fujiwara N, Fujita KI, Yamanaka Y, Seno S, Kobayashi H, Miyamae Y, Takahashi N, Shibuya Y, Masuda S.
iScience. 2019; 22:336-352. doi: 10.1016/j.isci.2019.11.033.
Distinct cell proliferation, myogenic differentiation, and gene expression in skeletal muscle myoblasts of layer and broiler chickens.
Nihashi Y, Umezawa K, Shinji S, Hamaguchi Y, Kobayashi H, Kono T, Ono T, Kagami H, Takaya T.
Sci Rep. 2019; 9(1):16527. doi: 10.1038/s41598-019-52946-4.
Global transcriptome analysis of pig induced pluripotent stem cells derived from six and four reprogramming factors.
Fukuda T, Doi K, Donai K, Takahashi K, Kobayashi H, Hirano T, Nishimori K, Yasue H.
Sci Data. 2019; 6:190034. doi: 10.1038/sdata.2019.34.
Tuning water-use efficiency and drought tolerance in wheat using abscisic acid receptors.
Mega R, Abe F, Kim JS, Tsuboi Y, Tanaka K, Kobayashi H, Sakata Y, Hanada K, Tsujimoto H, Kikuchi J, Cutler SR, Okamoto M.
Nat Plants. 2019; 5(2):153-159. doi: 10.1038/s41477-019-0361-8. Epub 2019 Feb 8.
(奈良医大に移動する以前に掲載の業績: Achievement before NMU)
Mitani, T., Yabuta, Y., Ohta, H., Nakamura, T., Yamashiro, C., Yamamoto, T., *Saitou, M. and *Kurimoto, K. Principles for the regulation of multiple developmental pathways by a versatile transcriptional factor, BLIMP1. Nucleic Acids Res, 45: 12152-12169. (2017)
Azami, T., Waku, T., Matsumoto, K., Jeon, H., Muratani, M., Kawashima, A., Yanagisawa, J., Manabe, I., Nagai, R., Kunath, T., Nakamura, T., Kurimoto, K., Saitou, M., Takahashi, S. and *Ema, M. Klf5 maintains the balance of primitive endoderm to epiblast specification during mouse embryonic development by suppression of Fgf4. Development 144: 3706-3718. (2017)
§Kurimoto, K.,§*Ohta, H., Okamoto, I., Nakamura, T., Yabuta, Y., Miyauchi, H., Yamamoto, T., Okuno, Y., Hagiwara, M., Shirane, K., Sasaki, H. and *Saitou, M. In vitro expansion of mouse primordial germ cell-like cells recapitulates an epigenetic blank slate. EMBO J, 36, 1888-1907. (2017)
Yamashiro, C., Hirota, T., Kurimoto, K., Nakamura, T., Yabuta, Y., Nagaoka, S.I., Ohta, H., Yamamoto, T. and *Saitou, M. Persistent Requirement and Alteration of the Key Targets of PRDM1 During Primordial Germ Cell Development in Mice. Biol Reprod, 94, 7. (2016)
Shirane, K., Kurimoto, K., Yabuta, Y., Yamaji, M., Satoh, J., Ito, S., Watanabe, A., Hayashi, K., *Saitou, M. and *Sasaki, H. Global Landscape and Regulatory Principles of DNA Methylation Reprogramming for Germ Cell Specification by Mouse Pluripotent Stem Cells. Dev Cell, 39, 87-103. (2016)
Ishikura, Y., Yabuta, Y., Ohta, H., Hayashi, K., Nakamura, T., Okamoto, I., Yamamoto, T., Kurimoto, K., Shirane, K., Sasaki, H. and *Saitou, M. In Vitro Derivation and Propagation of Spermatogonial Stem Cell Activity from Mouse Pluripotent Stem Cells. Cell Reports 17, 2780-2804. (2016)
§Sasaki, K., §Yokobayashi, S., Nakamura, T., Okamoto, I., Yabuta, Y., Kurimoto, K., Ohta, H., Moritoki, Y., Iwatani, C., Tsuchiya, H., Nakamura, S., Sekiguchi, K., Sakuma, T., Yamamoto, T., Mori, T., Woltjen, K., Nakagawa, M., Yamamoto, T., Takahashi, K., Yamanaka, S. and *Saitou, M. Robust In Vitro Induction of Human Germ Cell Fate from Pluripotent Stem Cells. Cell Stem Cell, 17, 178-194. (2015)
Nakamura, T., Yabuta, Y., Okamoto, I., Aramaki, S., Yokobayashi, S., Kurimoto, K., Sekiguchi, K., Nakagawa, M., Yamamoto, T. and *Saitou, M. SC3-seq: a method for highly parallel and quantitative measurement of single-cell gene expression. Nucleic Acids Res, 43, e60. (2015)
*§Kurimoto, K., §Yabuta, Y., Hayashi, K., Ohta, H., Kiyonari, H., Mitani, T., Moritoki, Y., Kohri, K., Kimura, H., Yamamoto, T., Katou, Y., Shirahige, K. and *Saitou, M. Quantitative Dynamics of Chromatin Remodeling during Germ Cell Specification from Mouse Embryonic Stem Cells. Cell Stem Cell, 16, 517-532. (2015)
Ohnishi, Y., Huber, W., Tsumura, A., Kang, M., Xenopoulos, P., Kurimoto, K., Oles, A.K., Arauzo-Bravo, M.J., Saitou, M., Hadjantonakis, A.K. and *Hiiragi, T. Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages. Nat Cell Biol, 16, 27-37. (2014)
Hirai, H., Fujishita, T., Kurimoto, K., Miyachi, H., Kitano, S., Inamoto, S., Itatani, Y., Saitou, M., Maekawa, T. and *Taketo, M.M. CCR1-mediated accumulation of myeloid cells in the liver microenvironment promoting mouse colon cancer metastasis. Clin Exp Metastasis, 31, 977-989. (2014)
Yamaji, M., Ueda, J., Hayashi, K., Ohta, H., Yabuta, Y., Kurimoto, K., Nakato, R., Yamada, Y., Shirahige, K. and *Saitou, M. PRDM14 Ensures Naive Pluripotency through Dual Regulation of Signaling and Epigenetic Pathways in Mouse Embryonic Stem Cells. Cell Stem Cell, 12, 1-15. (2013)
Nakaki, F., Hayashi, K., Ohta, H., Kurimoto, K., Yabuta, Y. and *Saitou, M. Induction of mouse germ-cell fate by transcription factors in vitro. Nature, 501, 222-226. (2013)
Kagiwada, S., Kurimoto, K., Hirota, T., Yamaji, M. and *Saitou, M. Replication-coupled passive DNA demethylation for the erasure of genome imprints in mice. EMBO J, 32, 340-353. (2013)
Aramaki, S., Hayashi, K., Kurimoto, K., Ohta, H., Yabuta, Y., Iwanari, H., Mochizuki, Y., Hamakubo, T., Kato, Y., Shirahige, K. and *Saitou, M. A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants. Dev Cell, 27, 516-529. (2013)
*Hayashi, K., Ogushi, S., Kurimoto, K., Shimamoto, S., Ohta, H. and *Saitou, M. Offspring from oocytes derived from in vitro primordial germ cell-like cells in mice. Science, 338, 971-975. (2012)
Yabuta, Y., Ohta, H., Abe, T., Kurimoto, K., Chuma, S. and *Saitou, M. TDRD5 is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice. J Cell Biol, 192, 781-795. (2011)
Hayashi, K., Ohta, H., Kurimoto, K., Aramaki, S. and *Saitou, M. Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells. Cell, 146, 519-532. (2011)
Yamaguchi, S., Kurimoto, K., Yabuta, Y., Sasaki, H., Nakatsuji, N., Saitou, M. and *Tada, T. Conditional knockdown of Nanog induces apoptotic cell death in mouse migrating primordial germ cells. Development, 136, 4011-4020. (2009)
§Kurimoto, K., §Kuwasako, K., §Sandercock, A.M., Unzai, S., Robinson, C.V., Muto, Y. and *Yokoyama, S. AU-rich RNA-binding induces changes in the quaternary structure of AUH. Proteins, 75, 360-372. (2009)
§Kurimoto, K., §Yamaji, M., §Seki, Y., Yabuta, Y., Yuasa, M., Shigeta, M., Yamanaka, K., Ohinata, Y. and *Saitou, M. Critical function of Prdm14 for the establishment of the germ cell lineage in mice. Nat Genet, 40, 1016-1022. (2008)
Kurimoto, K., Yabuta, Y., Ohinata, Y., Shigeta, M., Yamanaka, K. and *Saitou, M. Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice. Genes Dev, 22, 1617-1635. (2008)
Kawaguchi, A., Ikawa, T., Kasukawa, T., Ueda, H.R., Kurimoto, K., Saitou, M. and *Matsuzaki, F. Single-cell gene profiling defines differential progenitor subclasses in mammalian neurogenesis. Development, 135, 3113-3124. (2008)
Kurimoto, K., Yabuta, Y., Ohinata, Y. and *Saitou, M. Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis. Nat Protoc, 2, 739-752. (2007)
§Kurimoto, K., §Yabuta, Y., Ohinata, Y., Seki, Y. and *Saitou, M. Gene expression dynamics during germline specification in mice identified by quantitative single-cell gene expression profiling. Biol Reprod, 75, 705-716. (2006)
§Kurimoto, K., §Yabuta, Y., Ohinata, Y., Ono, Y., Uno, K.D., Yamada, R.G., Ueda, H.R. and *Saitou, M. An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis. Nucleic Acids Res, 34, e42. (2006)
Kurimoto, K., Muto, Y., Obayashi, N., Terada, T., Shirouzu, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Kigawa, T., Okumura, H., Tanaka, A., Shibata, N., Kashikawa, M., Agata, K. and *Yokoyama, S. Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein. J Struct Biol, 150, 58-68. (2005)
Kurimoto, K., Fukai, S., Nureki, O., Muto, Y. and *Yokoyama, S. Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase. Structure, 9, 1253-1263. (2001)
§Handa, N., §Nureki, O., Kurimoto, K., Kim, I., Sakamoto, H., Shimura, Y., Muto, Y. and *Yokoyama, S. Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein. Nature, 398, 579-585. (1999)
【総説 Review】
Kobayashi H. Canonical and Non-Canonical Genomic Imprinting in Rodents.2021;9:713878.doi:10.3389/fcell.2021.713878. https://www.frontiersin.org/articles/10.3389/fcell.2021.713878/full
So I.Nagaoka, Mitinori Saitou, and Kazuki Kurimoto. Reconstituting oogenesis in vitro: recent progress and future prospects Current Opinion in Endocrine and Metabolic Research, 2021 doi.org/10.1016/j.coemr.2021.03.022 https://www.sciencedirect.com/science/article/pii/S2451965021000478?via%3Dihub
長岡 創、栗本一基、斎藤通紀 「マウス卵母細胞運命決定機構の解明」実験医学 Vol. 38 No. 11 (７月号) 2020. 羊土社
栗本一基 「始原生殖細胞発生過程におけるDNAメチル化リプログラミング DNA methylation reprogramming during primordial germ cell development」細胞vol. 52 No.9（8月号） 2020 ニューサイエンス社 ISBN 04127-08
*Kurimoto K, Saitou M. Germ cell reprogramming. Curr Top Dev Biol. 2019;135:91-125. doi: 10.1016/bs.ctdb.2019.04.005. PubMed PMID: 31155364.
(奈良医大に移動する以前に掲載の業績: Achievement before NMU)
*Kurimoto K, *Saitou M. Epigenome regulation during germ cell specification and development from pluripotent stem cells. Curr Opin Genet Dev. 2018;52:57-64. doi: 10.1016/j.gde.2018.06.004. PubMed PMID: 29908427.
*Kurimoto, K. and *Saitou, M. Mechanism and Reconstitution In Vitro of Germ Cell Development in Mammals. Cold Spring Harbor Symposia on Quantitative Biology, 80, 147-154. (2016)
*Saitou, M. and Kurimoto, K. Paternal nucleosomes: are they retained in developmental promoters or gene deserts? Dev Cell, 30, 6-8. (2014)
*Saitou, M., Kagiwada, S. and Kurimoto, K. Epigenetic reprogramming in mouse pre-implantation development and primordial germ cells. Development, 139, 15-31. (2012)
*Kurimoto, K. and Saitou, M. A global single-cell cDNA amplification method for quantitative microarray analysis. Methods Mol Biol, 687, 91-111. (2011)
*Kurimoto, K. and Saitou, M. Single-cell cDNA microarray profiling of complex biological processes of differentiation. Curr Opin Genet Dev. (2010)
*Saitou, M., Yabuta, Y. and Kurimoto, K. Single-cell cDNA high-density oligonucleotide microarray analysis: detection of individual cell types and properties in complex biological processes. Reprod Biomed Online, 16, 26-40. (2008)
Kurimoto, K., Yamaji, M., Seki, Y. and *Saitou, M. Specification of the germ cell lineage in mice: a process orchestrated by the PR-domain proteins, Blimp1 and Prdm14. Cell Cycle, 7, 3514-3518. (2008)
【分担執筆 Book (Joint authorship)】
Kazuki Kurimoto, Hiroki Ikeda, and Hisato Kobayashi, Chapter 1. Epigenome reprogramming in the male and female germ line Epigenetics and Reproductive Health, Volume 21 1st Edition, Translational Epigenetics Series, Elsevir
栗本一基 , 疾患原因遺伝子・タンパク質の解析技術と創薬/診断技術への応用～エピゲノム、トランスクリプトーム、マルチオミクス、オープンデータベースの利活用～（技術情報協会：発刊予定：２０２２年３月末, SBN：978-4-86104-877-7）第３章 トランスクリプト―ム解析による疾患原因の解明とその手法
２節「シングルセルトランスクリプト―ム解析による疾患の病態解明」
(奈良医大に移動する以前に掲載の業績: Achievement before NMU)
Kurimoto K, Saitou M. A global single-cell cDNA amplification method for quantitative microarray analysis. PCR protocols, Third edition. Methods in Molecular Biology, 687, Chapter 7, 91-111. (Edited by Daniel J. Park), Humana Press. (2011)
栗本一基、斎藤通紀 「卵子学」 第I章 3. 生殖細胞の決定機構とその特性.（編集: 森崇英, 柴原浩章, 島田昌之, 角田幸雄）京都大学出版 (2011)
【産業財産権 Intellectual Property】
栗本一基、池田宏輝、宮尾晋太朗. 出願番号：特願2021-200053. 名称：細胞の溶解方法. 出願日：2021年12月9日. 出願人：公立大学法人奈良県立医科大学
(奈良医大に移動する以前に掲載の業績: Achievement before NMU)
Saitou M, Kurimoto K, Yabuta Y, Ohinata Y: Method for amplification of nucleotide sequence、特許番号（米国）：9222129, 出願人：理化学研究所(2015)
斎藤通紀,栗本一基、薮田幸宏、大日向康秀: 核酸配列増幅方法, 特許番号（国内）: 5526326, 出願人：理化学研究所 (2014)
【招待講演 Talks】
Kurimoto, K. Quantitative single-cell RNA-sequencing for tissue sections with DRaqL; an efficient RNA recovery and cDNA amplification method for laser capture microdissection. The International Symposium “Totipotency and Germ Cell Development 2022年11月25日
Kurimoto, K. Single-cell RNA-sequencing for frozen sections with DRaqL; an efficient RNA recovery and cDNA amplification method for laser capture microdissection. 第127回日本解剖学会年会 2022年3月28日
栗本一基. 生殖細胞発生過程のエピゲノム動態. 京都大学医学研究支援センター開設10周年セミナー 2021年12月7日
栗本一基. 始原生殖細胞の発生とエピゲノムリプログラミング . 第126回日本解剖学会総会･全国学術集会・第98回日本生理学会大会 2021年3月28日
栗本一基. 組織学にリンクした定量的な単一細胞遺伝子発現解析法の開発に向けて. 第42回日本分子生物学会年会 2019年12月5日
奈良医大に移動する以前に掲載の業績: Achievement before NMU)
Kurimoto, K. Quantitative Dynamics of Chromatin-State Reprogramming of Mouse Germ Cell Specification Pathway In Vitro. Gordon Research Conference, Germinal Stem Cell Biology. (2015)
Kurimoto K. Global transcription profiling of complex biological processes of cellular differentiation at the single-cell resolution. Pacifichem, Recent Advances in Bioanalysis: Ultra-Small Volumes, Global Metabolite Profiling and Single Cells. (2010)