Gupta D, & Andole S, Mishra K. Targeting the deSUMOylase Ulp2 in Candida glabrata for antifungal therapies: in silico identification of silymarin and honokiol as potential inhibitors. Journal of Computer-Aided Molecular Design 2025 Dec. 40. 13. 10.1007/s10822-025-00724-y.
Gupta D, Shukla R, Mishra K. SUMO-targeted Ubiquitin Ligases as crucial mediators of protein homeostasis in Candida glabrata. PLoS Pathog. 2024 Dec 6;20(12):e1012742. doi: 10.1371/journal.ppat.1012742. PMID: 39642165; PMCID: PMC11654969.
Chintala K, Yandrapally S, Faiz W, Kispotta CR, Sarkar S, Mishra K, Banerjee S. The nuclear pore protein NUP98 impedes LTR-driven basal gene expression of HIV-1, viral propagation, and infectivity. Front Immunol. 2024 Feb 21;15:1330738. doi: 10.3389/fimmu.2024.1330738. PMID: 38449868; PMCID: PMC10914986.
Lele TP, Levy DL, Mishra K. Editorial: Nuclear morphology in development and disease. Front Cell Dev Biol. 2023 Aug 8;11:1267645. doi: 10.3389/fcell.2023.1267645. PMID: 37614225; PMCID: PMC10443097.
Ramalingam K, Mishra K. Transcription termination complex, Rtt103-Rai1-Rat1, regulates sub-telomeric transcripts in Saccharomyces cerevisiae. RNA Biol. 2023 Jan;20(1):95-108. doi: 10.1080/15476286.2023.2192552. PMID: 36974034; PMCID: PMC10054321.
Pondugala VV, Mishra K. RNA-Mediated Regulation of Meiosis in Budding Yeast. Noncoding RNA. 2022 Nov 15;8(6):77. doi: 10.3390/ncrna8060077. PMID: 36412912; PMCID: PMC9680404.
Deolal P, Mishra K. An adaptable live-cell imaging protocol to analyze organelle morphology in Saccharomyces cerevisiae. STAR Protoc. 2022 Feb 14;3(1):101124. doi: 10.1016/j.xpro.2022.101124. PMID: 35243366; PMCID: PMC8857511.
Deolal P, Male G, Mishra K. The challenge of staying in shape: nuclear size matters. Curr Genet. 2021 Aug;67(4):605-612. doi: 10.1007/s00294-021-01176-1. Epub 2021 Mar 29. PMID: 33779777.
Deolal P, Mishra K. Regulation of diverse nuclear shapes: pathways working independently, together. Commun Integr Biol. 2021 Jul 5;14(1):158-175. doi: 10.1080/19420889.2021.1939942. PMID: 34262635; PMCID: PMC8259725.
Deolal P, Jamir I, Mishra K. Uip4p modulates nuclear pore complex function in Saccharomyces cerevisiae. Nucleus. 2022 Dec;13(1):79-93. doi: 10.1080/19491034.2022.2034286. PMID: 35171083; PMCID: PMC8855845.
Garapati HS, Male G, Mishra K. Predicting subcellular localization of proteins using protein-protein interaction data. Genomics. 2020 May;112(3):2361-2368. doi: 10.1016/j.ygeno.2020.01.007. Epub 2020 Jan 14. PMID: 31945465.
Male G, Deolal P, Manda NK, Yagnik S, Mazumder A, Mishra K. Nucleolar size regulates nuclear envelope shape in Saccharomyces cerevisiae. J Cell Sci. 2020 Oct 30;133(20):jcs242172. doi: 10.1242/jcs.242172. PMID: 32973112.
Gupta D, Garapati HS, Kakumanu AVS, Shukla R, Mishra K. SUMOylation in fungi: A potential target for intervention. Comput Struct Biotechnol J. 2020 Nov 12;18:3484-3493. doi: 10.1016/j.csbj.2020.10.037. PMID: 33294142; PMCID: PMC7691676.
Abraham NM, Ramalingam K, Murthy S, Mishra K. Siz2 Prevents Ribosomal DNA Recombination by Modulating Levels of Tof2 in Saccharomyces cerevisiae. mSphere. 2019 Nov 27;4(6):e00713-19. doi: 10.1128/mSphere.00713-19. PMID: 31776241; PMCID: PMC6881720.
Abraham NM, Mishra K. Elevated dosage of Ulp1 disrupts telomeric silencing in Saccharomyces cerevisiae. Mol Biol Rep. 2018 Dec;45(6):2481-2489. doi: 10.1007/s11033-018-4415-1. Epub 2018 Oct 24. PMID: 30357586.
Garapati HS, Mishra K. Comparative genomics of nuclear envelope proteins. BMC Genomics. 2018 Nov 16;19(1):823. doi: 10.1186/s12864-018-5218-4. PMID: 30445911; PMCID: PMC6240307.
Sreesankar E, Bharathi V, Mishra RK, Mishra K. Corrigendum: Drosophila Rif1 is an essential gene and controls late developmental events by direct interaction with PP1-87B. Sci Rep. 2016 Feb 9;6:17126. doi: 10.1038/srep17126. Erratum for: Sci Rep. 2015 May 29;5:10679. doi: 10.1038/srep10679. PMID: 26859551; PMCID: PMC4747156.
Sreesankar E, Bharathi V, Mishra RK, Mishra K. Drosophila Rif1 is an essential gene and controls late developmental events by direct interaction with PP1-87B. Sci Rep. 2015 May 29;5:10679. doi: 10.1038/srep10679. Erratum in: Sci Rep. 2016 Feb 09;6:17126. doi: 10.1038/srep17126. PMID: 26022086; PMCID: PMC4448129.
Sreesankar E, Bharathi V, Mishra RK, Mishra K. Drosophila Rif1 is an essential gene and controls late developmental events by direct interaction with PP1-87B. Sci Rep. 2015 May 29;5:10679. doi: 10.1038/srep10679. Erratum in: Sci Rep. 2016 Feb 09;6:17126. doi: 10.1038/srep17126. PMID: 26022086; PMCID: PMC4448129.
Hannan A, Abraham NM, Goyal S, Jamir I, Priyakumar UD, Mishra K. Sumoylation of Sir2 differentially regulates transcriptional silencing in yeast. Nucleic Acids Res. 2015 Dec 2;43(21):10213-26. doi: 10.1093/nar/gkv842. Epub 2015 Aug 28. PMID: 26319015; PMCID: PMC4666389.
Tirupataiah S, Jamir I, Srividya I, Mishra K. Yeast Nkp2 is required for accurate chromosome segregation and interacts with several components of the central kinetochore. Mol Biol Rep. 2014 Feb;41(2):787-97. doi: 10.1007/s11033-013-2918-3. Epub 2014 Jan 3. PMID: 24385296.
Pathak RU, Mamillapalli A, Rangaraj N, et al. AAGAG repeat RNA is an essential component of nuclear matrix in Drosophila. RNA Biology. 2013 Apr;10(4):564-571. DOI: 10.4161/rna.24326. PMID: 23588056; PMCID: PMC3710362.
Srividya I, Tirupataiah S, Mishra K. Yeast transcription termination factor Rtt103 functions in DNA damage response. PLoS One. 2012;7(2):e31288. doi: 10.1371/journal.pone.0031288. Epub 2012 Feb 15. PMID: 22355353; PMCID: PMC3280293.
Sreesankar E, Senthilkumar R, Bharathi V, Mishra RK, Mishra K. Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes. BMC Genomics. 2012 Jun 19;13:255. doi: 10.1186/1471-2164-13-255. PMID: 22712556; PMCID: PMC3410773.
Pasupala N, Easwaran S, Hannan A, Shore D, Mishra K. The SUMO E3 ligase Siz2 exerts a locus-dependent effect on gene silencing in Saccharomyces cerevisiae. Eukaryot Cell. 2012 Apr;11(4):452-62. doi: 10.1128/EC.05243-11. Epub 2012 Feb 17. PMID: 22345352; PMCID: PMC3318298.
Mishra, Krishnaveni., Mishra, Rakesh K., (2010) , Polycomb Group of Genes and the Epigenetics of Aging, Epigenetics of Aging, Springer, New York, NY,,,135-150.
Chopra, Vivek Sarojkumar., Srinivasan, Arumugam., Kumar, Ram Parikshan., Mishra, Krishnaveni., Basquin, Denis., Docquier, Mylène., Seum, Carole., Pauli, Daniel., Mishra, Rakesh Kumar.,(2008) , Transcriptional activation by GAGA factor is through its direct interaction with dmTAF3 , Developmental biology, Elsevier,317,2,660-670.
Anitha, M., Kallappagoudar, Satish., Pathak, Rashmi U., Mishra, Krishnaveni., Rangaraj, Nandini., Jagannadham, MV., Sundaram, CS., Mishra, Rakesh K., (2008) , Characterization of Nuclear Matrix Proteome of Drosophila melanogaster During Embryonic Development , J Proteomics, ,2,,092-092.
Pathak, Rashmi U., Rangaraj, Nandini., Kallappagoudar, Satish., Mishra, Krishnaveni., Mishra, Rakesh K., (2007) , Boundary element-associated factor 32B connects chromatin domains to the nuclear matrix , Molecular and Cellular Biology, American Society for Microbiology, 27,13,4796-4806.
Mishra, Krishnaveni., Chopra, Vivek S., Srinivasan, Arumugam., Mishra, Rakesh K., (2003) , Trl-GAGA directly interacts with lola like and both are part of the repressive complex of Polycomb group of genes , Mechanisms of development, Elsevier,120,6,681-689.
Mishra, Krishnaveni., Shore, David., (1999) , Yeast Ku protein plays a direct role in telomeric silencing and counteracts inhibition by rif proteins , Current biology, Cell Press,9,19,1123-S2.