Publications
Articles:
Links:
Kosuke Hamazaki, Hiroyoshi Iwata, Tristan Mary-Huard,
"Development of a novel GWAS method to detect QTL effects interacting with the discrete and continuous population structure",
[bioRxiv: 10.1101/2024.03.13.584913]
Kosuke Hamazaki and Hiroyoshi Iwata,
“AI-assisted selection of mating pairs through simulation-based optimized progeny allocation strategies in plant breeding”,
Frontiers in Plant Science 15:1361894 (2024) [bioRxiv: 10.1101/2023.01.25.525616]
Sei Kinoshita, Kengo Sakurai, Kosuke Hamazaki, Takahiro Tsusaka, Miki Sakurai, Terue Kurosawa, Youichi Aoki, Kenta Shirasawa, Sachiko Isobe, Hiroyoshi Iwata,
"Assessing the potential for genome-assisted breeding in red perilla using quantitative trait locus analysis and genomic prediction",
Genes 14(12), 2137 (2023) [bioRxiv: 10.1101/2023.10.15.560967]
Kengo Sakurai, Yusuke Toda, Kosuke Hamazaki, Yoshihiro Ohmori, Yuji Yamasaki, Hirokazu Takahashi, Hideki Takanashi, Mai Tsuda, Hisashi Tsujimoto, Akito Kaga, Mikio Nakazono, Toru Fujiwara, and Hiroyoshi Iwata,
“Random regression for modeling soybean plant response to irrigation changes using time-series multispectral data",
Frontiers in Plant Science 14 (2023) [bioRxiv: 10.1101/2023.04.05.535659]
Kosuke Hamazaki and Hiroyoshi Iwata,
“Bayesian optimization of multivariate genomic prediction models based on secondary traits for improved accuracy gains and phenotyping costs”,
Theor Appl Genet 135, 35–50 (2022). [bioRxiv: 10.1101/2020.11.20.390963]
Hiroshi Fujii, Keisuke Nonaka, Mai F. Minamikawa, Tomoko Endo, Aiko Sugiyama, Kosuke Hamazaki, Hiroyoshi Iwata, Mitsuo Omura, and Takehiko Shimada,
"Allelic composition of carotenoid metabolic genes in 13 founders influences carotenoid composition in juice sac tissues of fruits among Japanese citrus breeding population",
PLOS ONE 16(2): e0246468, 2021.
Motoyuki Ishimori, Hideki Takanashi, Kosuke Hamazaki, Yamato Atagi, Hiromi Kajiya-Kanegae, Masaru Fujimoto, Junichi Yoneda, Tsuyoshi Tokunaga, Nobuhiro Tsutsumi, and Hiroyoshi Iwata,
"Dissecting the Genetic Architecture of Biofuel-Related Traits in a Sorghum Breeding Population",
G3: GENES, GENOMES, GENETICS December 1, 2020 vol. 10 no. 12 4565-4577.
Kosuke Hamazaki, Hiromi Kajiya-Kanegae, Masanori Yamasaki, Kaworu Ebana, Shiori Yabe, Hiroshi Nakagawa, and Hiroyoshi Iwata,
“Choosing the optimal population for a genome-wide association study: A simulation using whole-genome sequences from rice”,
The Plant Genome, 2020; 13:e20005. [bioRxiv: 10.1101/798850]
Kosuke Hamazaki and Hiroyoshi Iwata,
“RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method”,
PLOS Computational Biology, 16(2): e1007663, 2020. [bioRxiv: 10.1101/612028]
Ph.D. Dissertation:
Kosuke Hamazaki, "Simulation studies and development of new methods to contribute to optimization of genome-assisted breeding", 2023 (Will be Public)
Master Thesis:
Kosuke Hamazaki, "Simulation studies and development of new methods to contribute to optimization of genome-assisted breeding", 2020 (Private)