PUBLICATIONS

Articles in international journals

1. Duarte* JV, Abreu* R, Castelo-Branco M (2022). A two-stage framework for neural processing of biological motion. Neuroimage; 259: 119403. DOI: 10.1016/j.neuroimage.2022.119403. [*equal contributors].

2. Dias MF, Carvalho P, Duarte JV, Castelo-Branco M (2022). Deformation Fields: A new source of information to predict Brain Age. Journal of Neural Engineering. DOI: 10.1088/1741-2552/ac7003.

3. Miranda* CO, Nobre* RJ, Paiva VH, Duarte JV, Castelhano J, Petrella LI, Sereno J, Santana M, Afonso S, Januário C, Castelo-Branco M, Almeida LP (2022). Cerebellar morphometric and spectroscopic biomarkers for Machado-Joseph Disease. Acta Neuropathologica Communications; DOI: 10.1186/s40478-022-01329-4. [*equal contributors].

4. Abreu* R, Soares* JF, Lima AC, Sousa L, Batista S, Castelo-Branco M, Duarte JV (2022). Optimizing EEG source reconstruction with concurrent fMRI-derived spatial priors. Brain Topography; DOI: 10.1007/s10548-022-00891-3. [*equal contributors].

5. Madeira* N, Martins* R, Duarte JV, Costa GN, Macedo A, Castelo-Branco M (2021). A Fundamental Distinction in Early Neural Processing of Implicit Social Interpretation in Schizophrenia and Bipolar Disorder. Neuroimage: Clinical; 32: 102836. DOI: 10.1016/j.nicl.2021.102836. [*equal contributors].

6. Crisóstomo J, Duarte JV, Moreno C, Gomes L, Castelo-Branco M (2021). A novel morphometric signature of brain alterations in type 2 diabetes: patterns of changed cortical gyrification. European Journal of Neuroscience; 1-12. DOI: 10.1111/ejn.15424.

7. Abreu R, Duarte JV (2021). Quantitative assessment of the impact of geometric distortions and their correction on fMRI data analyses. Frontiers Neuroscience - Brain Imaging Methods. DOI: 10.3389/fnins.2021.642808.

8. Sousa T, Duarte JV, Costa GN, Costa GN, Kemper VG, Martins R, Goebel R, Castelo-Branco M (2021). The dual nature of the BOLD signal: responses in visual area hMT+ reflect both input properties and perceptual decision. Human Brain Mapping. DOI: 10.1002/hbm.25339.

9. Sayal* A, Sousa* T, Duarte JV, Costa GN, Martins R, Castelo-Branco M (2020). Identification of competing neural mechanisms underlying positive and negative perceptual hysteresis in the human visual system. Neuroimage. DOI: 10.1016/j.neuroimage.2020.117153. [*equal contributors]

10. Madeira* N, Duarte* JV, Martins R, Costa GN, Macedo A, Castelo-Branco M (2020). Morphometry and gyrification in bipolar disorder and schizophrenia: a comparative MRI study. Neuroimage: Clinical. 102220. DOI: 10.1016/j.nicl.2020.102220. [*equal contributors]

11. Sousa T, Duarte JV, Costa GN, Kemper VG, Martins R, Goebel R, Castelo-Branco M (2019). Tracking perceptual decision mechanisms through changes in interhemispheric functional connectivity in human visual cortex. Scientific Reports; 9, art 1242. DOI: 10.1038/s41598-018-37822-x.

12. Sousa T, Campos AS, Duarte JV, Costa GN, Martins R, Castelo-Branco M (2018). Evidence for distinct levels of neural adaptation to both coherent and incoherently moving visual surfaces in visual area hMT+. Neuroimage; 179, p540-547. DOI: 10.1016/j.neuroimage.2018.06.075.

13. Duarte JV, Costa GN, Martins R, Castelo-Branco M (2017). Pivotal role of hMT+ in disambiguation of interhemispheric bistable surface motion. Human Brain Mapping; 38(10), p4882-4897. DOI: 10.1002/hbm.23701.

14. Al-Rawi MS, Freitas A, Duarte JV, Cunha JP, Castelo-Branco M (2017). Permutations of fMRI Classification May Not Be Normally Distributed. Statistical Methods in Medical Research; 26(6), p2567-2585. DOI: 10.1177/0962280215601707.

15. Ferreira F, Pereira JMS, Reis A, Sanches M, Duarte JV, Gomes L, Moreno C, Castelo-Branco M (2017). Early visual cortical structural changes in diabetic patients without diabetic retinopathy. Graefe's Archive for Clinical and Experimental Ophthalmology; 255(11), p2113-2118. DOI: 10.1007/s00417-017-3752-4.

16. Ferreira F, Pereira JMS, Duarte JV, Castelo-Branco M (2017). Extending inferential group analysis in type 2 diabetes patients with multivariate GLM implemented in SPM8. The Open Neuroimaging Journal; 11, p32-45. DOI: 10.2174/1874440001711010032.

17. Costa GN, Duarte JV, Martins R, Wibral M, Castelo-Branco M (2017). Interhemispheric binding of ambiguous visual motion is associated with changes in beta oscillatory activity but not with gamma range synchrony. Journal of Cognitive Neuroscience; 29(11), p1829-1844. DOI: 10.1162/jocn_a_01158.

18. Intaitè* M, Duarte* JV, Castelo-Branco M (2016). Working memory load influences perceptual ambiguity by competing for fronto-parietal attentional resources. Brain Research; 1650, p142-151. DOI: 10.1016/j.brainres.2016.08.044. [*equal contributors]

19. Duarte* JV, Faustino* R, Lobo M, Cunha G, Nunes C, Ferreira C, Januário C, Castelo-Branco M (2016). Parametric fMRI of paced motor responses uncovers novel whole brain imaging biomarkers in SCA3. Human Brain Mapping; 37(10), p3656-3668. DOI: 10.1002/hbm.23266. [*equal contributors]

20. Duarte JV, Pereira JMS, Quendera B, Raimundo M, Moreno C, Gomes L, Carrilho F, Castelo-Branco M (2015). Early disrupted neurovascular coupling and changed event level hemodynamic response function in type 2 diabetes: an fMRI study. Journal of Cerebral Blood Flow and Metabolism; 35(10), p1671-1680. DOI: 10.1038/jcbfm.2015.106.

21. Duarte JV, Ribeiro MJ, Violante IR, Cunha G, Silva E, Castelo-Branco M (2014). Multivariate pattern analysis reveals subtle brain anomalies relevant to the cognitive phenotype in Neurofibromatosis type 1. Human Brain Mapping; 35(1), p89-106. DOI: 10.1002/hbm.22161.

22. Violante IR, Ribeiro MJ, Cunha G, Bernardino I, Duarte JV, Ramos F, Saraiva J, Silva E, Castelo-Branco M (2012). Abnormal brain activation in neurofibromatosis type 1: a link between visual processing and the default mode network. PLoS One; 7(6):e38785. DOI: 10.1371/journal.pone.0038785.

Preprints

1. Duarte* JV, Abreu* R, Castelo-Branco M (2022). A two-stage framework for neural processing of biological motion. bioRxiv. DOI: 10.1101/2022.03.08.483404. [*equal contributors].

2. Soares JF, Abreu R, Lima, AC, Sousa L, Batista S, Castelo-Branco M, Duarte JV (2022). Task-based fMRI in early Multiple Sclerosis: what is the best head motion correction approach? medRxiv. DOI: 10.1101/2022.01.31.22270167.

3. Madeira N, Martins R, Duarte JV, Costa GN, Macedo A, Castelo-Branco M (2021). A Fundamental Distinction in Early Neural Processing of Implicit Social Interpretation in Schizophrenia and Bipolar Disorder. medRxiv. DOI: 10.1101/2021.03.08.21253057.

4. Crisóstomo J, Duarte JV, Moreno C, Gomes L, Castelo-Branco M (2021). A novel morphometric signature of brain alterations in type 2 diabetes: patterns of changed cortical gyrification. medRxiv. DOI: 10.1101/2021.02.25.21252196.

5. Abreu R, Soares JF, Batista S, Lima AC, Sousa L, Castelo-Branco M, Duarte JV (2021). Optimizing EEG source reconstruction with concurrent fMRI-derived spatial priors. bioRxiv. DOI: 10.1101/2021.02.19.431976.

Conference papers

1. Soares J, Abreu R, Lima AC, Batista S, Sousa L, Castelo-Branco M, Duarte JV (2021). On the optimal strategy for tackling head motion in fMRI data. 14th International Conference on Bio-inspired Systems and Signal Processing – BIOSIGNALS 2021. ISBN: 978-989-758-490-9. DOI: 10.5220/0010327803060313. Virtual meeting.

2. Soares J, Sousa T, d’Almeida OC, Batista S, Sousa L, Castelo-Branco M, Duarte JV (2020). Investigating whole-brain MRI markers in Multiple Sclerosis – emerging dimensions in morphometric space. In: Henriques J., Neves N., de Carvalho P. (eds) XV Mediterranean Conference on Medical and Biological Engineering and Computing - MEDICON 2019. IFMBE Proceedings, vol 76, p1644-1652. Springer, Cham. DOI: 10.1007/978-3-030-31635-8_202. Coimbra, Portugal.

3. Al-Rawi MS, Freitas A, Duarte JV, Castelo-Branco M (2014). Permutation distributions of fMRI classification do not behave in accord with central limit theorem. 4th International Workshop on Pattern Recognition in Neuroimaging (PRNI) - IEEE Xplore. DOI: 10.1109/PRNI.2014.6858506. Tübingen, Germany.

4. Direito B, Duarte JV, Teixeira CA, Le Van Quyen M, Schulze-Bonhage A, Sales F, Dourado A (2011). Feature selection in high dimensional EEG feature spaces for epileptic seizure prediction. 18th International Federation of Automatic Control (IFAC) World Congress - IFAC Proceedings Volumes (IFAC-PapersOnline). DOI: 10.3182/20110828-6-IT-1002.03331. Milan, Italy.

5. Duarte JV, Ribeiro M, Violante I, Cunha G, Al-Rawi M, Cunha JP, Castelo-Branco M (2011). Multivariate pattern analysis of brain structure: A diagnostic tool for Neurofibromatosis type 1. 1st Portuguese Meeting in Bioengineering (ENBENG) - Portuguese chapter of IEEE EMBS. DOI: 10.1109/ENBENG.2011.6026061. Lisbon, Portugal.

6. Duarte JV, Nuzzo A, Malovini A, Puca AA, Bellazzi R (2009). SNP2Net: a tool for gene-based predictive modeling in genome-wide association studies. International Conference on Intelligent Data Analysis in bioMedicine And Pharmacology (IDAMAP). p33-34. Verona, Italy.

7. Dourado A, Martins R, Duarte JV, Direito B (2008). Towards Personalized Neural Networks for Epileptic Seizure Prediction. In: Kůrková V., Neruda R., Koutník J. (eds) International Conference on Artificial Neural Networks - ICANN. Lecture Notes in Computer Science; Vol 5164, p479-487. Springer, Berlin, Heidelberg. DOI: 10.1007/978-3-540-87559-8_50.

Conference posters

1. Duarte JV, Abreu R, Castelo-Branco M (2022). Representational similarity analysis of neural processing of global and local biological motion. International Conference of Cognitive Neuroscience - ICON 2022. Helsinki, Finland.

2. Duarte JV, Soares JF, Abreu R, Lima AC, Sousa L, Batista S, Castelo-Branco M (2022). Functional connectivity biomarkers in early Multiple Sclerosis measured with simultaneous EEG-fMRI. 28th Annual Meeting of the Organization for Human Brain Mapping - OHBM 2022. Glasgow, Scotland.

3. (... see full CV here)

Theses | Dissertations

• Duarte JV (2016). The role of long-range neural oscillatory synchrony as a mechanism underlying in perceptual coherence
  PhD Thesis in Health Sciences - Faculty of Medicine, University of Coimbra, Portugal. URL: http://hdl.handle.net/10316/31083.

• Duarte JV (2009). Machine learning approaches in Genome-Wide Association Studies: SNP2Net, a tool for gene-based predictive modelling
  MSc Thesis in Biomedical Engineering - Faculty of Sciences and Technology, University of Coimbra (Portugal) & Laboratorio di Bioinformatica, Università degli Studi di Pavia (Italia). URL: http://hdl.handle.net/10316/11377.