Jen-Pan Huang - Publications

Publications

Upcoming publications

Jen-Pan Huang (2026) A fitness landscape perspective on species boundary and gene flow for taxonomic practitioners in the genomic era. Zoological Studies, accepted.

Yi-Hsiu Kuan, Zong-Yu Shen, Pin Yi Li†, Wei-Yun Chen, Huei-Jiun Su, and Jen-Pan Huang (2026) Selective yet opportunistic assemblies of symbionts in a lichen community, Cladia asiatica, in Taiwan. Biological Journal of the Linnean Society, accepted.

Highlights

My-Hanh Le, Max Proctor, and Jen-Pan Huang (2025) Chromosome level genome assembly of Dynastes reidi reveals structural evolution of autosomes and the sex chromosomes in Hercules beetles. G3: Genes|Genomes|Genetics, 15, jkaf198.

COVER STORY: November/2025 issue in G3.

Mattia De Vivo, Min-Hsun Chou, Shu-Ping Wu, Yi-Hsiu Kuan, Wei-Yun Chen, Liang-Jong Wang, Brett Morgan, Guan-Jie Phang, and Jen-Pan Huang (2023) Genomic tools for comparative conservation genetics among three recently diverged stag beetles (Lucanus, Lucanidae). Insect Conservation and Diversity, 16, 853-869.

Brett Morgan, Tzi-Yuan Wang, Yi-Zhen Chen, Victor Moctezuma, Oscar Burgos, and Jen-Pan Huang (2022) Long-read sequencing data reveals dynamic evolution of mitochondrial genome size and the phylogenetic utility of mitochondrial DNA in Hercules beetles (Dynastes; Scarabaeidae). Genome Biology and Evolution, 14, evac147.

COVER STORY: October/2022 issue in GBE.

Dawson M. White, Jen-Pan Huang, Orlando Adolfo Jara-Muñoz, Santiago Madriñán, Richard H. Ree, and Roberta J. Mason-Gamer (2021) The origins of coca: museum genomics reveals multiple independent domestications from progenitor Erythroxylum gracilipes. Systematic Biology, 70, 1-13.

Jen-Pan Huang, Ekaphan Kraichak, Steven D. Leavitt, Matthew Nelsen, and H. Thorsten Lumbsch (2019) Accelerated diversifications in three diverse families of morphologically complex lichen-forming fungi link to major historical events. Scientific Reports, 9, 8518.

PRESS RELEASE: When the dinosaurs died, lichens thrived.

DISCOVER MAGAZINE: Lichens survived a mass extinction.

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