Schedule
July 29 - August 2
All Conference Sessions are being held in the Jacobs School of Medicine and Biomedical Sciences, 955 Main Street, Buffalo, NY, 14203. Please use the main entrance located at the corner of High St. & Main St. Your conference ID badge will allow access to the building and is required by security to be worn at all times during the meeting.
Morning and Afternoon coffee breaks will occur Tuesday-Friday outside the Active Learning Center, even where not noted on schedule.
July 29
OBO Core Workshop
Room 1110, Jacobs School of Medicine and Biomedical Sciences
8:15 – 9:00
Continental Breakfast
9:00 – 12:00
OBO core workshop (invitation only)
12:00 – 1:00
Lunch
1:00 – 4:00
OBO core workshop (invitation only)
4:00 – 5:00
Session on integration of Common Core Ontologies with BFO and OBO-Core
July 30
Tutorials & Workshops
8:00 – 9:00
ICBO 2019 Registration, entry lobby, Jacobs School of Medicine and Biomedical Sciences
Continental Breakfast, outside Active Learning Center, Jacobs School of Medicine and Biomedical Sciences
9:00 – 12:00
- First International Workshop on Biomedical Ontologies & Natural Language Processing
- Active Learning Center
- An Introduction to Referent Tracking
- Room 2220
12:00 – 1:00
Lunch
Outside Active Learning Center
1:00 – 4:00
- Tutorial: Machine learning with ontologies
- Active Learning Center
- An Introduction to Referent Tracking
- Room 2220
Presentations
Active Learning Center
Session Chair 4 – 5: William Duncan
4:00 – 4:20
Foundation for a realist ontology of cognitive processes
David Kasmier, David Limbaugh and Barry Smith
4:20 – 4:40
Eric Merrell, David Limbaugh, Alex Anderson and Barry Smith
4:40 – 5:00
David Limbaugh, David Kasmier, Werner Ceusters and Barry Smith
5:00
End of activities for the day
July 31
Tutorials & Workshops
8:00 – 9:00
ICBO 2019 Registration, entry lobby, Jacobs School of Medicine and Biomedical Sciences
Continental Breakfast, outside Active Learning Center
9:00 – 12:00
- 8th Vaccine and Drug Ontology Studies (VDOS) workshop
- Room 2220
- A how-to guide to create, manage, and release an OBO ontology
- Active Learning Center
12:00 – 1:00
Lunch
Outside Active Learning Center
1:00 – 4:00
- The 3rd international Cells in Experimental Life Science Workshop (CELLS-2019)
- Room 2220
- Tutorial: Basic Formal Ontology and Its Applications in Biomedicine
- Active Learning Center
Presentations
Active Learning Center
Session Chair 4 – 5: James Overton
4:00 – 4:20
Melissa Clarkson and Steven Roggenkamp
4:20 – 4:40
Wordified Ontologies: Evaluating a Novel Paradigm for Ontology Editing
Aisha Blfgeh and Phillip Lord
4:40 – 5:00
Representing Causation: A Dispositional Perspective
Fumiaki Toyoshima
5:00 – 8:00
Networking Reception
August 1
All conference sessions will be in the Active Learning Center
8:00 – 8:30
ICBO 2019 Registration, entry lobby, Jacobs School of Medicine and Biomedical Sciences
Continental Breakfast, outside Active Learning Center
8:30 – 9:00
Opening remarks
9:00 – 10:00
Keynote Presentation, chair William Duncan
International Standard Ontology
Barry Smith, Julian Park Chair, Department of Philosophy, University at Buffalo
10:00 – 10:30
Coffee Break
Session Chair 10:30 – 12: William Hogan
10:30 – 10:50
Jean Noël Nikiema and Olivier Bodenreider
10:50 – 11:20
A classification of instructions in drug prescriptions and pharmacist documents
Adrien Barton, Paul Fabry and Jean-Francois Ethier
11:20 – 11:40
Chinese Ontology Construction and Application for Drug Adverse Reaction
Xin Lin, Jinjing Guo and Huiling Ren
11:40 – 12:00
TXPO: A toxic process ontology for better understanding of drug-induced liver injury
Yuki Yamagata, Yoshinobu Igarashi, Noriyuki Nakatsu and Hiroshi Yamada
12:00 – 1:00
Lunch
Outside Active Learning Center
Session Chair 1 – 2:10: Oliver He
1:00 – 1:30
Ontology of Physics for Biology — a companion ontology to Basic Formal Ontology
Daniel Cook, John Gennari and Maxwell Neal
1:30 – 1:50
A Realism-based Approach to Representing Symbiotic Interactions
Matthew Diller, Evan Johnson, Amanda Hicks and William Hogan
1:50 – 2:10
Meng Liu, Hong-Yu Ou and Yongqun He
2:10 – 2:30
Coffee Break
Session Chair 2:30 – 4: Lynn Schriml
2:30 – 3:00
Yongqun He, Edison Ong, Jennifer Schaub, Frederick Dowd, John F. O’toole, Anastasios Siapos, Christian Reich, Sarah Seager, Ling Wan, Hong Yu, Jie Zheng, Christian Stoeckert, Xiaolin Yang, Sheng Yang, Becky Steck, Christopher Park, Laura Barisoni, Matthias Kretzler, Jonathan Himmelfarb, Ravi Iyengar and Sean Mooney
3:00 – 3:30
The Hypertension Ontology: Coordinating clinical data with context-sensitive hypertension criteria
Amanda Hicks, Mark Miller, Danielle Mowery and Christian Stoeckert
3:30 – 4:00
Ling Wan, Edison Ong and Yongqun He
4:00 – 5:30
Poster presentations & Software demonstrations
5:30 – 6:00
Leave for dinner by hired bus or private transport
6:00 – 9:00
Dinner at Marcy Casino, Delaware Park (included in Conference Fee)
August 2
All conference sessions will be in the Active Learning Center
8:00 – 9:00
Continental Breakfast, outside Active Learning Center
9:00 – 10:00
Keynote Presentation, chair Alexander Diehl
Putting principles into practice: OBO ontologies and applications in immunology
Bjoern Peters, Professor, La Jolla Institute for Immunology
10:00 – 10:20
Break
Session Chair 10:20 – 12:10: Jonathan Bona
10:20 – 10:50
Ontology as Product-Service System: A Study of GO, BFO and DOLCE
Barry Smith
10:50 – 11:20
Building a Shared Ontology Use Patterns Repository
Jonathan Bona, Joseph Utecht, Sarah Bost, Corey Hayes and Mathias Brochhausen
11:20 – 11:50
Mark Miller and Christian Stoeckert
11:50 – 12:10
Roles and Their Siblings in Basic Formal Ontology
Fumiaki Toyoshima
12:10 – 1:00
Lunch
Outside Active Learning Center
1:00 – 1:30
The Future of SNOMED CT
Jim Case, SNOMED International
1:30 – 2:30
Panel discussion, Opportunities for collaboration between the OBO Foundry community and SNOMED
Panel: Jim Case, Chris Stoeckert, Peter Elkin, Barry Smith
Moderator: Olivier Bodenreider
2:30 – 2:50
Break
Session Chair 2:50 – 4: Alexander Diehl
2:50 – 3:10
OBO-Core Update
3:10 – 3:30
Foundations for a Realism-based Drug Repurposing Ontology
James Schuler, William Mangione, Ram Samudrala and Werner Ceusters
3:30 – 3:50
Early steps of an Ontology for Magnetic Resonance Imaging: MRIO
Lucas Serra, Michael Dwyer, William Duncan and Alexander D. Diehl
3:50 – 4:00
Closing remarks
4:00
End of ICBO 2019