Abstracts and Software Demonstrations

Posters

• Ontology-based Semantic Mapping of Adverse Outcome Pathways

Rong-Lin Wang

• Integrating and Maintaining OMIM Cross-references in the Disease Ontology

Susan M Bello, Cynthia L Smith, Lynn M Schriml

• Ontological Derivation of Mendeleev’s Periodic Table of Chemical Elements

Kaiyong Liu, Yongqun He

• Alignment of the Ontology of Host-Microbiome Interactions (OHMI) high level terms with existing OBO ontologies

Yongqun He, Jie Zheng, Anna Maria Masci, Jihad Obeid, for the OHMI Consortium

• Ontological Modeling of Two-Component Regulatory Systems

Hsin-Hui Huanga, Meng Liu, Yongqun He

• Representation of Protein Aggregates in an Ontological Framework

Lauren M. Wishnie, Alexander P. Cox, Alexander D. Diehl

• Towards an Ontology-Driven Machine Learning Approach to the Diagnosis Classification Problem in Autism Spectrum Disorder

Fumiaki Toyoshima

• Where does an Ontology start?

Henriette Harmse, Melanie Courtot, Warren Read, Nico Matentzoglu, David Osumi-Sutherland, Simon Jupp

• First steps towards an ontology for laboratory test prescription and reporting

Paul Fabry, Adrien Barton, François Goyer, Olivier Grenier, Jean-François Ethier

• OGG-Bac: Ontological Representation of Orthologous Bacterial Genes

Meng Liu, Hong-Yu Ou, Yongqun He

• Reconstruction of Hierarchical Structures in a Thesaurus-based Ontology through Curation by Domain Experts

Tatsuya Kushida, Kouji Kozaki, Yasunori Yamamoto, Atsuko Yamaguchi, Takahiro Kawamura, Takako Nakagawa, Yuka Tateisi, Toshihisa Takagi

• Ontology-based Analysis of Adverse Drug Reaction Case Reports Associated with Quinolone Drugs in China

Xin Lin, Jinjing Guo, Huiling Ren

• Towards Developing an Ontology for Mobility among Individuals with Acquired Brain Injury (ABI)-An Umbrella Review

Alhasani, R., Auger, C., Ahmed, S.

• Ontolion: A Web-based Integrative Ontology Development Platform

Edison Ong, Yongqun He

• Catalog for ontologies towards semantic integration across environmental health science research data

Resham Kulkarni, Mike Conway, Deep Patel, Maria Shatz, Stephanie Holmgren, Charles Schmitt

• Mapping Data Annotated with the Minimum Information About BIobank data Sharing (MIABIS) 2.0 to the Ontology for Biobanking (OBIB)

Sarah Bost, Niina Eklund, Kaisa Silander, Jie Zheng, Christian J. Stoeckert, Mathias Brochhausen

• Using Stases to Enrich Queries for When and Where Regulations Are in Force

Jonathan M. Vajda, MA; J. Neil Otte, PhD; Cooper Stansbury, MS;Frank J. Manion, PhD; Marcelline R. Harris, PhD; and Cui Tao, PhD

• OWLmaker: An Application for Generating OWL Files from Tabular Text

Jie Zheng, John Judkins, Christian Stoeckert

• Semantic Integration of Neuroinformatics Data in the Arkansas Image Enterprise System with Open Biomedical Ontologies

Jonathan P. Bona, Aaron S. Kemp, Tracy Nolan, Linda Larson-Prior, Aparna Das, Tuhin Virmani, Lakshmi Pillai, Mathias Brochhausen, and Fred Prior

• NGBO: Introducing -omics data into biobanking ontology

Dalia Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, William W.L. Hsiao

• New Features for Biomedical Ontology Editing in Protégé

Matthew Horridge, Rafael S. Gonçalves, Josef Hardi, Csongor Nyulas, and Mark A. Musen

• An ontology-driven web platform for publishing data specifications to support data sharing

Damion M. Dooley, Ivan S. Gill, Emma J. Griffiths, William L. Hsiao

• Opportunities for Ontologies in Medical Device Total Product Life Cycle (TPLC) Evaluation

Asiyah Yu Lin

• Medical Action Ontology (MAxO)

Leigh C. Carmody, Xingmin A. Zhang, Nicole A. Vasilevsky, Chris J. Mungall, Nico Matentzoglu, Peter N. Robinson

• Tibb-Med-Linking-Onto: Knowledge Representation of Linking Prophetic Medicine with Current Medical practices

Muna Al-Razgan, Salwa Ali, Sarah Mohamed Hassan, Asiyah Yu Lin

• Tripartite Term Enrichment Analysis of Multiple Sclerosis Patient Reported Outcomes

Mackenzie T. Smith, Lauren M. Wishnie, William D. Duncan, Mark Jensen, Alexander D. Diehl

Software Demonstrations

• Biomedical Informatics Investigator

Peter L. Elkin, Sarah Mullin, Sylvester Sakilay