Matlab_ToolBox

TSTOOL can be used for computing: Time-delay reconstruction, Lyapunov exponents, Fractal dimensions, Mutual information, Surrogate data tests, Nearest neighbor statistics, Return times, Poincare sections, Nonlinear prediction

http://www.physik3.gwdg.de/tstool/

MATLAB / Data description toolbox

A Matlab toolbox for data description, outlier and novelty detection

March 26, 2004 - D.M.J. Tax

http://www-ict.ewi.tudelft.nl/~davidt/dd_tools/dd_manual.html

MBE

http://www.pmarneffei.hku.hk/mbetoolbox/

Betabolic network toolbox for Matlab

http://www.molgen.mpg.de/~lieberme/pages/network_matlab.html

Pharmacokinetics toolbox for Matlab

http://page.inf.fu-berlin.de/~lieber/seiten/pbpk_toolbox.html

The Spider

The spider is intended to be a complete object orientated environment for machine learning in Matlab. Aside from easy use of base learning algorithms, algorithms can be plugged together and can be compared with, e.g model selection, statistical tests and visual plots. This gives all the power of objects (reusability, plug together, share code) but also all the power of Matlab for machine learning research.

http://www.kyb.tuebingen.mpg.de/bs/people/spider/index.html

Schwarz-Christoffel Toolbox

http://www.mathworks.com/matlabc ... mp;objectType=file#

XML Toolbox

http://www.mathworks.com/matlabc ... amp;objectType=file

FIR/TDNN Toolbox for MATLAB

Beta version of a toolbox for FIR (Finite Impulse Response) and TD (Time Delay) Neural Networks.

http://www.cs.utep.edu/interval-comp/dagstuhl.03/oish.pdf

Misc.

http://www.dcsc.tudelft.nl/Research/Software/index.html

Astronomy

Saturn and Titan trajectories ... MALTAB astronomy

http://sprg.ssl.berkeley.edu/~abrecht/Matlab-codes/

Audio

MA Toolbox for Matlab Implementing Similarity Measures for Audio

http://www.oefai.at/~elias/ma/index.html

MAD - Matlab Auditory Demonstrations

http://www.dcs.shef.ac.uk/~martin/MAD/docs/mad.htm

Music Analysis - Toolbox for Matlab : Feature Extraction from Raw Audio Signals for Content-Based Music Retrieval

http://www.ai.univie.ac.at/~elias/ma/

WarpTB - Matlab Toolbox for Warped DSP

By Aki H?rm? and Matti Karjalainen

http://www.acoustics.hut.fi/software/warp/

MATLAB-related Software

http://www.dpmi.tu-graz.ac.at/~schloegl/matlab/

Biomedical Signal data formats (EEG machine specific file formats with Matlab import routines)

http://www.dpmi.tu-graz.ac.at/~schloegl/matlab/eeg/

MPEG Encoding library for MATLAB Movies (Created by David Foti)

It enables MATLAB users to read (MPGREAD) or write (MPGWRITE) MPEG movies. That should help Video Quality project.

Filter Design package

http://www.ee.ryerson.ca:8080/~mzeytin/dfp/index.html

Octave by Christophe COUVREUR (Generates normalized A-weigthing, C-weighting, octave andone-third-octave digital filters)

http://www.mathworks.com/matlabc ... ile&objectId=69

Source Coding MATLAB Toolbox

http://www.ece.umn.edu/users/kieffer/programs.html

Bio Medical Informatics (Top)

CGH-Plotter: MATLAB Toolbox for CGH-data Analysis

Code: http://sigwww.cs.tut.fi/TICSP/CGH-Plotter/

Poster: http://sigwww.cs.tut.fi/TICSP/CSB2003/Posteri_CGH_Plotter.pdf

The Brain Imaging Software Toolbox

http://www.bic.mni.mcgill.ca/software/

MRI Brain Segmentation

http://www.mathworks.com/matlabc ... le.do?objectId=4879

Chemometrics (providing PCA) (Top)

Matlab Molecular Biology & Evolution Toolbox

(Toolbox Enables Evolutionary Biologists to Analyze and View DNA and Protein Sequences)

James J. Cai

http://www.pmarneffei.hku.hk/mbetoolbox/

Toolbox provided by Prof. Massart research group

http://minf.vub.ac.be/~fabi/publiek/

Useful collection of routines from Prof age smilde research group

http://www-its.chem.uva.nl/research/pac

Multivariate Toolbox written by Rune Mathisen

http://www.bitjungle.com/~mvartools/index.html

Matlab code and datasets

http://www.acc.umu.se/~tnkjtg/chemometrics/dataset.html

Chaos (Top)

Chaotic Systems Toolbox

http://www.mathworks.com/matlabc ... mp;objectType=file#

HOSA Toolbox

http://www.mathworks.nl/matlabce ... amp;objectType=file

Chemistry (Top)

MetMAP - (Metabolical Modeling, Analysis and oPtimization alias Met. M. A. P.)

http://webpages.ull.es/users/sympbst/pag_ing/pag_metmap/index.htm

DoseLab - A set of software programs for quantitative comparison of measured and computed radiation dose distributions

http://doselab.sourceforge.net

GenBank Overview

http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html

Matlab: http://www.mathworks.com/matlabc ... le.do?objectId=1139

Coding

Code for the estimation of Scaling Exponents

http://www.cubinlab.ee.mu.oz.au/~darryl/secondorder_code.html

Control (Top)

Control Tutorial for Matlab

http://www.engin.umich.edu/group/ctm/

Another

Communications (Top)

Channel Learning Architecture toolbox

(This Matlab toolbox is a supplement to the article "HiperLearn: A High Performance Learning Architecture")

http://www.isy.liu.se/cvl/Projects/hiperlearn/

Source Coding MATLAB Toolbox

http://www.ece.umn.edu/users/kieffer/programs.html

TCP/UDP/IP Toolbox 2.0.4

http://www.mathworks.com/matlabc ... amp;objectType=file

Home Networking Basis: Transmission Environments and Wired/Wireless Protocols

Walter Y. Chen

http://www.mathworks.com/support ... new&language=-1

MATLAB M-files and Simulink models

http://www.mathworks.com/matlabc ... amp;objectType=file

Engineering (Top)

OPNML/MATLAB Facilities

http://www.opnml.unc.edu/OPNML_Matlab/

Mesh Generation

http://www.cs.cornell.edu/home/vavasis/qmg-home.html

OpenFEM : An Open-Source Finite Element Toolbox

http://www.openfem.net/

CALFEM is an interactive computer program for teaching the finite element method (FEM)

http://www.byggmek.lth.se/Calfem/frinfo.htm

The Engineering Vibration Toolbox

http://www.cs.wright.edu/people/ ... olbox/vtoolbox.html

SaGA - Spatial and Geometric Analysis Toolbox

by Kirill K. Pankratov

http://puddle.mit.edu/~glenn/kirill/saga.html

MexCDF and NetCDF Toolbox For Matlab-5&6

http://woodshole.er.usgs.gov/sta ... /MexCDF/nc4ml5.html

CUEDSID: Cambridge University System Identification Toolbox

http://www-control.eng.cam.ac.uk/jmm/cuedsid/

Kriging Toolbox

http://www.ai-geostats.org/softw ... KRIGING_TOOLBOX.htm

Monte Carlo (Dr Nando)

http://www.cs.ubc.ca/~nando/software.html

RIOTS - The Most Powerful Optimal Control Problem Solver

http://blank.hypersurf.com/~adam/RIOTS/

Excel

MATLAB xlsheets

http://www.mathworks.com/matlabc ... amp;objectType=file

write2excel

http://www.mathworks.com/matlabc ... amp;objectType=file

Finite Element Modeling (FEM) (Top)

OpenFEM - An Open-Source Finite Element Toolbox

http://www.openfem.net/

NLFET - nonlinear finite element toolbox for MATLAB ( framework for setting up, solving, and interpreting results for nonlinear static and dynamic finite element analysis.)

http://nlfet.sourceforge.net/

GetFEM - C++ library for finite element methods elementary computations with a Matlab interface

http://www.gmm.insa-tlse.fr/getfem/

FELIPE - FEA package to view results ( contains neat interface to MATLA

http://www.brunel.ac.uk/~blstmbr/felipe/

Finance (Top)

A NEW MATLAB-BASED TOOLBOX FOR COMPUTER AIDED DYNAMIC TECHNICAL TRADING

Stephanos Papadamou and George Stephanides

Department of Applied Informatics, University Of Macedonia Economic & Social Sciences, Thessaloniki, Greece

http://www.fenews.com/fen31/one_ ... h_trade_matlab6.htm

Paper: http://econwpa.wustl.edu:8089/eps/prog/papers/0201/0201001.pdf

CompEcon Toolbox for Matlab

http://www4.ncsu.edu/~pfackler/compecon/toolbox.html

Genetic Algorithms (Top)

The Genetic Algorithm Optimization Toolbox (GAOT) for Matlab 5

http://www.ie.ncsu.edu/mirage/GAToolBox/gaot/

Genetic Algorithm Toolbox

Written & distributed by Andy Chipperfield (Sheffield University, UK)

http://www.shef.ac.uk/uni/projects/gaipp/gatbx.html

Manual: http://www.shef.ac.uk/~gaipp/ga-toolbox/manual.pdf

Genetic and Evolutionary Algorithm Toolbox (GEATbx)

http://www.geatbx.com

Evolutionary Algorithms for MATLAB

http://www.geatbx.com/links/ea_matlab.html

Genetic/Evolutionary Algorithms for MATLAB

http://www.systemtechnik.tu-ilme ... tlab/ea_matlab.html

Graphics

VideoToolbox (C routines for visual psychophysics on Macs by Denis Pelli)

http://vision.nyu.edu/VideoToolbox/

Paper: http://psych.nyu.edu/pelli/pubs/pelli1997videotoolbox.pdf

4D toolbox

http://www.nmr.mgh.harvard.edu/~ ... tlab/4DToolbox.html

Images (Top)

Eyelink Toolbox

http://psychtoolbox.org/eyelinktoolbox/

Paper: http://psychtoolbox.org/eyelinktoolbox/EyelinkToolbox.pdf

CellStats: Automated statistical analysis of color-stained cell images in Matlab

http://sigwww.cs.tut.fi/TICSP/CellStats/

SDC Morphology Toolbox for MATLAB (powerful collection of latest state-of-the-art gray-scale morphological tools that can be applied to image segmentation, non-linear filtering, pattern recognition and image analysis)

http://www.mmorph.com/

Image Acquisition Toolbox

http://www.mathworks.com/products/imaq/

Halftoning Toolbox for MATLAB

http://www.ece.utexas.edu/~bevan ... /toolbox/index.html

DIPimage - A Scientific Image Processing Toolbox for MATLAB

http://www.ph.tn.tudelft.nl/DIPlib/dipimage_1.html

PNM Toolbox

http://home.online.no/~pjacklam/matlab/software/pnm/index.html

Another

ICA / KICA and KPCA (Top)

ICATU Toolbox

http://mole.imm.dtu.dk/toolbox/menu.html

MISEP Linear and Nonlinear ICA Toolbox

http://neural.inesc-id.pt/~lba/ica/mitoolbox.html

Kernel Independant Component Analysis

http://www.cs.berkeley.edu/~fbach/kernel-ica/index.htm

Matlab: kernel-ica version 1.2

KPCA- Please check the software section of kernel machines.

Kernel

Statistical Pattern Recognition Toolbox

http://cmp.felk.cvut.cz/~xfrancv/stprtool/

MATLABArsenal A MATLAB Wrapper for Classification

http://finalfantasyxi.inf.cs.cmu.edu/tmp/MATLABArsenal.htm

Markov (Top)

MapHMMBOX 1.1 - Matlab toolbox for Hidden Markov Modelling using Max. Aposteriori EM

Prerequisites: Matlab 5.0, Netlab. Last Updated: 18 March 2002.

http://www.robots.ox.ac.uk/~parg/software/maphmmbox_1_1.tar

HMMBOX 4.1 - Matlab toolbox for Hidden Markov Modelling using Variational Bayes

Prerequisites: Matlab 5.0,Netlab. Last Updated: 15 February 2002..

http://www.robots.ox.ac.uk/~parg/software/hmmbox_3_2.tar

http://www.robots.ox.ac.uk/~parg/software/hmmbox_4_1.tar

Markov Decision Process (MDP) Toolbox for Matlab

Kevin Murphy, 1999

http://www.ai.mit.edu/~murphyk/Software/MDP/MDP.zip

Markov Decision Process (MDP) Toolbox v1.0 for MATLAB

http://www.inra.fr/bia/T/MDPtoolbox/

Hidden Markov Model (HMM) Toolbox for Matlab

http://www.ai.mit.edu/~murphyk/Software/HMM/hmm.html

Bayes Net Toolbox for Matlab

http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html

Medical (Top)

EEGLAB Open Source Matlab Toolbox for Physiological Research (formerly ICA/EEG Matlab toolbox)

http://www.sccn.ucsd.edu/~scott/ica.html

MATLAB Biomedical Signal Processing Toolbox

http://bsp.pdx.edu/Toolbox/

Powerful package for neurophysiological data analysis ( Igor Kagan webpage)

http://igoresha.virtualave.net/Matlab/Unitret.html

EEG / MRI Matlab Toolbox

http://eeg.sourceforge.net/

Microarray data analysis toolbox (MDAT): for normalization, adjustment and analysis of gene expression data.

Knowlton N, Dozmorov IM, Centola M. Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA 73104. We introduce a novel Matlab toolbox for microarray data analysis. This toolbox uses normalization based upon a normally distributed background and differential gene expression based on 5 statistical measures. The objects in this toolbox are open source and can be implemented to suit your application. AVAILABILITY: MDAT v1.0 is a Matlab toolbox and requires Matlab to run. MDAT is freely available at:

http://microarray.omrf.org/publications/2004/knowlton/MDAT.zip

MIDI (Top)

MIDI Toolbox version 1.0 (GNU General Public License)

http://www.jyu.fi/musica/miditoolbox/

Misc. (Top)

MATLAB-The Graphing Tool

http://sprg.ssl.berkeley.edu/~abrecht/matlab.html

3-D Circuits The Circuit Animation Toolbox for MATLAB

http://engineering.dartmouth.edu/other/3Dcircuits/

SendMail

http://carol.wins.uva.nl/~portegie/matlab/sendmail/

Coolplot

http://www.reimeika.ca/marco/matlab/coolplots.html

MPI (Matlab Parallel Interface)

Cornell Multitask Toolbox for MATLAB

http://www.tc.cornell.edu/Services/Software/CMTM/

Beolab Toolbox for v6.5

Thomas Abrahamsson (Professor, Chalmers University of Technology, Applied Mechanics, Göteborg, Sweden)

http://www.mathworks.nl/matlabce ... amp;objectType=file

PARMATLAB

Neural Networks (Top)

SOM Toolbox

http://www.cis.hut.fi/projects/somtoolbox/

Bayes Net Toolbox for Matlab

http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html

NetLab

http://www.ncrg.aston.ac.uk/netlab/

Random Neural Networks

http://www.cs.ucf.edu/~ahossam/rnnsimv2/

ftp:

NNSYSID Toolbox (tools for neural network based identification of nonlinear dynamic systems)

http://www.iau.dtu.dk/research/control/nnsysid.html

Oceanography (Top)

WAFO. Wave Analysis for Fatigue and Oceanography

http://www.maths.lth.se/matstat/wafo/

ADCP toolbox for MATLAB (USGS, USA)

Presented at the Hydroacoustics Workshop in Tampa and at ADCP's in Action in San Diego

http://woodshole.er.usgs.gov/operations/stg/pubs/ADCPtools

SEA-MAT - Matlab Tools for Oceanographic Analysis

A collaborative effort to organize and distribute Matlab tools for the Oceanographic Community

http://sea-mat.whoi.edu/

Ocean Toolbox

http://www.mar.dfo-mpo.gc.ca/sci ... de/programming.html

EUGENE D. GALLAGHER

(Associate Professor, Environmental, Coastal & Ocean Sciences)

http://www.es.umb.edu/edgwebp.htm

Optimization (Top)

MODCONS - a MATLAB Toolbox for Multi-Objective Control System Design

http://www.eee.kcl.ac.uk/mecheng/jfw/modcons.html

Lazy Learning Package

http://iridia.ulb.ac.be/~lazy/

SDPT3 version 3.02 -- a MATLAB software for semidefinite-quadratic-linear programming

http://www.math.nus.edu.sg/~mattohkc/sdpt3.html

Minimum Enclosing Balls: Matlab Code

http://www.compgeom.com/meb/

SOSTOOLS Sum of Squares Optimization Toolbox for MATLAB User’s guide

http://www.cds.caltech.edu/sostools/sostools.pdf

PSOt - a Particle Swarm Optimization Toolbox for use with Matlab

By Brian Birge ... A Particle Swarm Optimization Toolbox (PSOt) for use with the Matlab scientific programming environment has been developed. PSO is

introduced briefly and then the use of the toolbox is explained with some examples. A link to downloadable code is provided.

Plot

http://globec.whoi.edu/software/plotting/gbplot/

Signal Processing (Top)

Filter Design with Motorola DSP56K

http://www.ee.ryerson.ca:8080/~mzeytin/dfp/index.html

Change Detection and Adaptive Filtering Toolbox

http://www.sigmoid.se/

Signal Processing Toolbox

http://www.mathworks.com/products/signal/

ICATU Toolbox

http://mole.imm.dtu.dk/toolbox/menu.html

Time-Frequency Toolbox for Matlab

http://crttsn.univ-nantes.fr/~auger/tftb.html

VoiceBox - Speech Processing Toolbox

http://www.ee.ic.ac.uk/hp/staff/dmb/voicebox/voicebox.html

Least Squared - Support Vector Machines (LS-SVM)

http://www.esat.kuleuven.ac.be/sista/lssvmlab/

WaveLab802 : the Wavelet Toolbox

By David Donoho, Mark Reynold Duncan, Xiaoming Huo, Ofer Levi

http://www-stat.stanford.edu/~wavelab/

Time-series Matlab scripts

http://wise-obs.tau.ac.il/~eran/MATLAB/TimeseriesCon.html

Uvi_Wave Wavelet Toolbox Home Page

http://www.gts.tsc.uvigo.es/~wavelets/index.html

Another

Support Vector Machine (Top)

MATLAB Support Vector Machine Toolbox

Dr Gavin Cawley

School of Information Systems, University of East Anglia

http://theoval.sys.uea.ac.uk/~gcc/svm/toolbox/

LS-SVM - SISTA

SVM toolboxes

http://www.cs.wisc.edu/dmi/svm/

LSVM Lagrangian Support Vector Machine

http://www.cs.wisc.edu/dmi/lsvm/

Statistics (Top)

Logistic regression

http://www.spatial-econometrics.com/

SAGA

http://globec.whoi.edu/software/saga/

Multi-Parametric Toolbox (MPT) A tool (notonly) for multi-parametric optimization.

http://control.ee.ethz.ch/~mpt/

ARfit: A Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models

http://www.mat.univie.ac.at/~neum/software/arfit/

The Dimensional Analysis Toolbox for MATLAB

Home: http://www.sbrs.de/

Paper: http://www.isd.uni-stuttgart.de/ ... /similarity2002.pdf

FATHOM for Matlab

http://www.rsmas.miami.edu/personal/djones/

PLS-toolbox

http://www.eigenvector.com

Multivariate analysis toolbox (N-way Toolbox - paper)

http://www.models.kvl.dk/source/nwaytoolbox/index.asp

Classification Toolbox for Matlab

http://tiger.technion.ac.il/~eladyt/classification/index.htm

Matlab toolbox for Robust Calibration

http://www.wis.kuleuven.ac.be/stat/robust/toolbox.html

Statistical Parametric Mapping

http://www.fil.ion.ucl.ac.uk/spm/spm2.html

Time Series Analysis

http://www.dpmi.tu-graz.ac.at/~schloegl/matlab/tsa/

Bayes Net Toolbox for Matlab

Written by Kevin Murphy

http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html

Other: http://www.isp.pitt.edu/information/toolboxes.html

ARfit: A Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models

http://www.gps.caltech.edu/~tapio/arfit/

M-Fit

http://www.ill.fr/tas/matlab/doc/mfit4/mfit.html

Dimensional Analysis Toolbox for Matlab

http://www.sbrs.net/

The NaN-toolbox: A statistic-toolbox for Octave and Matlab®

... handles data with and without MISSING VALUES.

http://www-dpmi.tu-graz.ac.at/~schloegl/matlab/NaN/

Iterative Methods for Optimization: Matlab Codes

http://www4.ncsu.edu/~ctk/matlab_darts.html

Multiscale Shape Analysis (MSA) Matlab Toolbox 2000

http://www.vision.ime.usp.br/~cesar/projects/multiscale/

Multivariate Ecological & Oceanographic Data Analysis (FATHOM)

From David Jones

http://www.rsmas.miami.edu/personal/djones/

glmlab (Generalized Linear Models in MATLA

http://www.sci.usq.edu.au/staff/dunn/glmlab/glmlab.html

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