Publications

A novel coarsened graph learning method for scalable single-cell data analysis. Computers in Biology and Medicine, Volume 188, 2025, 109873, ISSN 0010-4825,.

HistoGraphCoarse: Strategizing Graph Coarsening Techniques for Efficient Analysis of Gigapixel Histopathological Images. In: Ahmadi, SA., Kazi, A. (eds) Graphs in Biomedical Image Analysis. GRAIL 2024. Lecture Notes in Computer Science, vol 15182. Springer, Cham, 2025

Integrating Artificial Intelligence-Driven Wearable Technology in Oncology Decision-Making: A Narrative Review Oncology 103 (1), 69-81, 2025.

Assessing spatial sequencing and imaging approaches to capture the molecular and pathological heterogeneity of archived cancer tissues. J. Pathol., 265: 274-288, 2025

Microarray integrated spatial transcriptomics (MIST) for affordable and robust digital pathology. npj Syst Biol Appl 10, 142, 2024. 

Universal correlation for the critical diameter of deterministic lateral displacement devices with polygonal posts. Biomicrofluidics 18 (4) 2024.

Advances in single-cell long-read sequencing technologies. NAR genomics and bioinformatics 6 (2), lqae047, 2024.

Caution towards spurious off-target signal in 10X Visium spatial transcriptomics assay from potential lncRNAs Briefings in Bioinformatics, Volume 24, Issue 2, March 2023.

Construing the metaxin-2 mediated simultaneous localization between mitochondria and nucleolus using molecular viscometry Chem. Sci., 2022, 13, 12987-12995

Single-cell RNA sequencing reveals cellular heterogeneity and stage transition under temperature stress in synchronized Plasmodium falciparum cells Microbiology Spectrum 2021 9, 1

Dissecting the nutrient partitioning mechanism in rice grain using spatially resolved gene expression profiling. Journal of Experimental Botany, Volume 72, Issue 6, 17 March 2021, Pages 2212–2230

Complete genome assembly of Candida auris representative strains of three geographical clades. NS Mahar, S Kohli, B Biswas, I Xess, A Thakur, I Gupta Microbiology Resource Announcements 13 (10), e00882-23

Rapamycin and Torin2 inhibit Candida auris TOR: Insights through growth profiling, docking, and MD simulations. Journal Of Biomolecular Structure and Dynamics. 2023, VOL. 41, NO. 17, 8445–8461

Identification of herpesvirus transcripts from genomic regions around the replication origins.  Scientific Reports 13, 16395 (2023)

A Novel Robust Method Mimicking Human Substratum To Dissect the Heterogeneity of Candida auris Biofilm Formation. Microbiology Spectrum  (2023) 11:4

Draft Genome Sequence of a Delftia sp., a Member of an Electroactive Community Enriched from Wastewater from the Indian Institute of Technology Delhi, India. Microbiology Spectrum (2023)  Volume 11  Issue 4  e00892-23

(As postdoc@TilgnerLab) Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells. Nature Biotechnology, 36, 1197–1202 (2018)

(As a postdoc @GoateLab) Analysis of whole genome-transcriptomic organization in brain to identify genes associated with alcoholism. Transl Psychiatry 9, 89 (2019). 

(As a postdoc @GoateLab) Integrative transcriptome analyses of the aging brain implicate altered splicing in Alzheimer’s disease susceptibility. Nature Genetics 50, 1584–1592 (2018). 

(As postdoc @SteinmetzLab) Translational capacity of a cell is determined during transcription elongation via the Ccr4-Not complex. Cell Reports 15, 1782–1794, (2016)

(As postdoc @SteinmetzLab) Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila. Nature Communications 7, 12128 (2016).

(As a PhD @SteinmetzLab) A high‐throughput ChIP‐Seq for large‐scale chromatin studies. 

(As a PhD @SteinmetzLab) Alternative polyadenylation diversifies post‐transcriptional regulation by selective RNA–protein interactions.  Mol Syst Biol. (2014)10:719