2024
Dynamic modulation of enhancer-promoter and promoter-promoter connectivity in gene regulation.
Makino S, Fukaya T*.
BioEssays. doi.org/10.1002/bies.202400101. Review.
Regulatory landscape of enhancer-mediated transcriptional activation.
Kawasaki K, Fukaya T*.
Trends in Cell Biology. doi.org/10.1016/j.tcb.2024.01.008. Review.
2023
Enhancer dynamics: Unraveling the mechanism of transcriptional bursting.
Fukaya T*.
Science Advances. 9(31), eadj3366. Review.
Functional coordination between transcription factor clustering and gene activity.
Kawasaki K, Fukaya T*.
Molecular Cell. 83(10):1605-1622. [Highlighted in Mol Cell]
Dynamic interplay between non-coding enhancer transcription and gene activity in development.
Hamamoto K, Umemura Y, Makino S, Fukaya T*.
Nature Communications. 14(1):826.
2022
Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers.
Takeuchi C, Yokoshi M, Kondo S, Shibuya A, Saito K, Fukaya T, Siomi H*, Iwasaki Y.W*.
Nucleic Acids Research. 50(20):11580-11599.
Molecular architecture of enhancer-promoter interaction.
Hamamoto K, Fukaya T*.
Current Opinion in Cell Biology. 74:62–70. Review.
Yokoshi M, Kawasaki K (co-first), Cambón M, Fukaya T*.
Nucleic Acids Research. 50(1):92-107.
2021
Dynamic regulation of anterior-posterior patterning genes in living Drosophila embryos.
Fukaya T*.
Current Biology. 31(10):2227-2236. [Highlighted in Faculty Opinions]
2020
Eritano A.S, Bromley C.L, Bolea Albero A, Schütz L, Wen F.-L, Takeda M, Fukaya T, Sami M.M, Shibata T, Lemke S, and Wang Y.-C*.
Developmental Cell. 53(2):212-228.
Visualizing the role of boundary elements in enhancer-promoter communication.
Yokoshi M, Segawa K, Fukaya T*.
Molecular Cell. 78(2):224-235. [Highlighted in Trends Genet]
2019
Large distances separate co-regulated genes in living Drosophila embryos.
Heist T, Fukaya T, Levine M*.
Proceedings of the National Academy of Sciences. 116(30):15062-15067.
Dynamics of transcriptional enhancers and chromosome topology in gene regulation.
Yokoshi M, Fukaya T*.
Development, Growth & Differentiation. 61(5):343-352. Review.
2018
Temporal dynamics of pair-rule stripes in living Drosophila embryos.
Lim B*, Fukaya T, Heist T, Levine M*.
Proceedings of the National Academy of Sciences. 115(33):8376-8381.
Visualization of transvection in living Drosophila embryos.
Lim B, Heist T, Levine M*, Fukaya T*.
Molecular Cell. 70(2):287-296. [Highlighted in Mol Cell, Faculty Opinions]
2017
Fukaya T*, Levine M*.
Current Biology. 27(19):R1047-R1049. Review.
Rapid rates of Pol II elongation in the Drosophila embryo.
Fukaya T*, Lim B, Levine M*.
Current Biology. 27(9):1387-1391.
2016 and earlier
Enhancer control of transcriptional bursting.
Fukaya T, Lim B, Levine M* (2016).
Cell. 166(2):358-368. [Highlighted in Nat Rev Genet, Curr Biol, Faculty Opinions]
CCR4 and CAF1 deadenylases have an intrinsic activity to remove the post-poly(A) sequence.
Niinuma S, Fukaya T, Tomari Y* (2016).
RNA. 22(10):1550–1559.
MicroRNAs block assembly of eIF4F translation initiation complex in Drosophila.
Fukaya T, Iwakawa HO, Tomari Y* (2014).
Molecular Cell. 2;56(1):67-78.
MicroRNAs mediate gene silencing via multiple different pathways in Drosophila.
Fukaya T, Tomari Y* (2012).
Molecular Cell. 28;48(6):825-36.
The role of decapping proteins in the miRNA accumulation in Arabidopsis thaliana.
Motomura K, Le QTN, Kumakura N, Fukaya T, Takeda A, Watanabe Y* (2012).
RNA Biology. 9(5):644-652.
RNA processing bodies, peroxisomes, Golgi bodies, mitochondria, and endoplasmic reticulum tubule junctions frequently pause at cortical microtubules.
Hamada T*, Tominaga M, Fukaya T, Nakamura M, Nakano A, Watanabe Y, Hashimoto T, Baskin TI (2012).
Plant and Cell Physiology. 53(4):699-708.
PABP is not essential for microRNA‐mediated translational repression and deadenylation in vitro.
Fukaya T, Tomari Y* (2011).
The EMBO Journal. 30 (24):4998-5009.
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