MS Park, M Cha, DS Kim, JB Choi, YL Cha* and SJ Kim*, Improved Succinic Acid Production by the Acid-Tolerant Actinobacillus succinogenes, Developed via Adaptive Laboratory Evolution, New Biotechnology (In preparation).

YH Kim†, SA Lee†, JE Kim, M Cha, K Lee*, and SJ Kim*, Molecular Cloning, Biochemical Characterization, and Structural Insights of a Flavonoid-Associated Class II 4-Coumarate:CoA Ligase from Sageretia thea, Journal of Microbiology and Biotechnology (In preparation).

DS Jeong†, T Kim†, M Cha, H Lee, and SJ Kim*, Field-applicable cell-free biosensor for rapid detecting arsenic in foods, Journal of Agricultural and Food Chemistry (In preparation).

BR Park†, CR Jeong†, YS Cho, M Cha, T Kim, YL Cha, and SJ Kim*, Enhanced production of porphyra-334 by metabolically engineered Saccharomyces cerevisiae introducing novel D-alanine-D-alanine ligase from cyanobacteria, aff. Roholtiella sp., International Journal of Biological Macromolecules (In preparation)

S Kim†, JE Nho†, Hyoung Il Son, MA Kim*, and SJ Kim*, Modeling the relationship between sensory attributes and liking using generalized additive mixed models: A case study of plant-based meat alternatives, npj Science and Food (Under revision).

S Kim, JH Kim, J Seol, J Pak, HI Son*, and SJ Kim*, Multi-Attribute Prediction of Protein Composition and Hardness using Semantic Segmentation for 3D-Printed Plant-based Meat Analogues, Current Research in Food Science (Under revision).

JH Kim†, S Kim†, J Seol, HI Son*, and SJ Kim*, Non-destructive deep Learning-based prediction of total glycoalkaloid content and quality classification in potatoes, LWT (Under revision).

EJ Jeon, SK Kim, HS Lim, HB Kang, BG Park, YJ Ko, B Lee, SG Woo, TH Kim, SJ Kim, K An, YS Hong, SG Lee*, and DH Lee*, Microbial production of γ-curcumene as a precursor for bisabolane, a terpenoid-based aviation biofuel, International Journal of Biological Macromolecules (Submitted).

G Lee†, S Kim, SR Jeong, SJ Kim*, and A Hong*, Improved defective classification using ensemble method for Korean cookie (Yakgwa) quality management, Journal of Agricultural and Food Chemistry (Submitted).

J Seol†, J Kim†, Y Hong†, M Cha, S Park*, KJ Jang*, SJ Kim*, HI Son*, Towards an Intelligent 3D Food Printing: A Review of the Perspective of Material, Fabrication, Monitoring, and Control, Critical Reviews in Food Science and Nutrition 66(5), 1012-1043.

S Kim, J Seol, E Ju, J Park, HI Son*, and SJ Kim*, A novel quantitative analysis method for printability in 3D food printing for surimi, Journal of Food Engineering 403, 112725.

E Ju, J Seol, S Kim, S Kim, SJ Kim*, and HI Son*, Comparison of Deep Learning Models for 3D Food Printing Monitoring System, Journal of Food Engineering 409, 112903. 

 M Cha, MS Park, and SJ Kim*, Biological routes for biohydrogen production: A clean and carbon-free fuel, Biotechnology Journal 20(7) e70074.

HT Thanh Doan, T Kim, M Cha, and SJ Kim*, Synthesis and potential application of slowly digestible starch, Journal of Functional Foods 131 (2025) 106955.

S Chun, YG Lee, SJ Kim, KJ Jeong, K Park, KH Kim, and YC Park*, Efficient production of 3,6-anhydro-L-galactose from red algal neoagarobiose by whole-cell biocatalysis of recombinant Corynebacterium glutamicum,  Food Research International 218, (2025) 116924.

T Kim†, EJ Jeon†, KK Kwon, M Ko, HN Kim, SK Kim, E Rha, J Shin, H Kim, DH Lee, BH Sung, SJ Kim, H Lee*, and SG Lee*, Cell-free biosensor with automated acoustic liquid handling for rapid and scalable characterization of cellobiohydrolases on microcrystalline cellulase, Synthetic Biology, 10(1), ysaf005.

Y Ryu†, FE Bouharras†, M Cha†, J Mudondo†, Y Kim, SR Ramakrishnan, S Shin, Y Yu, W Lee, J Park, Y Song, SJ Yum, HG Cha*, DA Ahn*, SJ Kim*, and HT Kim*, Recent advancements in the evolution, production, and degradation of biodegradable mulch films: A review, Environmental Research 277 (15) 121629.

DS Jeong , S Kim, and SJ Kim*Investigation of 3D printing quality of surimi ink with adding sugar and alternative sugars, Korea Journal of Agricultural Science, 52, 41-50.

KR Baek, HJ Lee, KH Jeong, BR Park, SJ Kim, SO Seo*, Parabiotic immunomodulatory activity of yeast cell wall polysaccharides from Saccharomyces cerevisiae and S. boulardii, Journal of Functional Foods, 123, 106577.

BK Kim, MS Park, M Cha, YL Cha, and SJ Kim*, Production of succinic acid by metabolically engineered Actinobacillus succinogenes from lignocellulosic hydrolysate derived from barley straw, Journal of Microbiology and Biotechnology 34 (12) 2618-2626.

BR Park†, CR Jeong†, M Cha, YL Cha, SY Kim, JY Cho, and SJ Kim*, Sustainable production of shinorine from agricultural wastes using engineered Saccharomyces cerevisiae expressing novel D-alanine-D-alanine ligase from Pseudonocardia pini, Journal of Agricultural and Food Chemistry, 72(41), 22710-22721.

KR Baek, S Ramakrishnan, SJ Kim* and SO Seo*, Yeast cell wall mannan structural features, biological activities, and production strategies, Heliyon, 10, e27896.

M Cha†, JK Kim†, WH Lee, H S, TG Lee, SK Kim, and SJ Kim*, Metabolic Engineering of Caldicellulosiruptor bescii for Hydrogen Production, Applied Microbiology and Biotechnology, 108: 65. 

S Park, BR Park, D Jeong, J Park, JK Ko, SJ Kim, JS Kim, YS Jin, and SR Kim*, Functional expression of RuBisCO reduces CO2 emission during fermentation by engineered Saccharomyces cerevisiae, Process Biochemistry, 134, 286-293.

SH Park†, SE Kang†, SJ Kim*, J Kim*, Graphene-encapsulated Yeast Cells in Harsh Conditions, Fungal Biology, 127(10–11), 1389-1396.

S Ramakrishnan, U Antony and SJ Kim*, Non-thermal process technologies: Influences on nutritional and storage characteristics of millets, Journal of Food Process Engineering, 46, e14215. 

SR Jin, BG Cho, SB Mun, SJ Kim*, CW Cho*, Investigation of the adsorption affinity of organic micropollutants on seaweed and its QSAR study, Environmental Research, 232, 116349.

M Cha, JH Kim, HJ Choi, SB Nho, SY Kim, YL Cha, H Song, WH Lee, SK Kim, and SJ Kim*, Hydrogen Production from Barley Straw and Miscanthus by the Hyperthermophilic Bacterium, Caldicellulosirupter bescii, Journal of Microbiology and Biotechnology 33(10):1-6. 

YO Lee, SH Do, JY Won, YW Chin, LS Chewaka, BR Park, SJ Kim, SK Kim*, Inverse metabolic engineering for improving protein content in Saccharomyces cerevisiae, Biotechnology Journal, 18, 2300014. 

S Kim, BG Park, H Jin, D Lee, JY Teoh, YJ Kim, S Lee, SJ Kim, SH Moh, D Yoo, W Choi and JS Hahn, Efficient production of natural suncreens shinorine, porphyra-334, and mycosporine-2-glycine in Saccharomyces cerevisiae, Metabolic Engineering 78, 137-147.

SY Song, DH Park, SH Lee, HK Lim, JW Park, CR Jeong, SJ Kim*, SS Cho*, Purification of phenoloxidase from Haliotis discus hannai and its anti-inflammatory activity in vitro, Fish and Shellfish Immunology 137, 108741.

TH Kim, SG Woo, SK Kim, BH Yoo, J Shin, E Rha, SJ Kim, KK Kwon, H Lee, H Kim, HT Kim, BH Sung, SG Lee and DH Lee*, A genetically encoded biosensor for the detection of levulinic acid, Journal of Microbiology and Biotechnology 33(4): 552-558.

S Ramakrishnan, CR Jeong, JW Park, SS Cho* and SJ Kim*, A review on the processing of functional proteins or peptides derived from fish by-products and their use in food, pharmaceutical, and cosmetic industries, Heliyon, 9 e14188.

SR Kim, M Cha, T Kim, S Song, HJ Kang, Y Jung, JY Cho, SH Moh and SJ Kim*, Sustainable production of shinorine from lignocellulosic biomass by metabolically engineered Saccharomyces cerevisiae, Journal of Agricultural and Food Chemistry, 70, 50, 15848-15858.

SA Chae†, S Ramakrishnan†, T Kim, SR Kim, WY Bang, CR Jeong, J Yang* and SJ Kim*, Anti-inflammatory and anti-pathogenic potential of Lacticaseibacillus rhamnosus IDCC 3201 isolated from feces of breast-fed infants, Microbial Pathogenesis 173, Part A, 105857.

DH Kim†, HJ Choi†, YR Lee, SJ Kim, S Lee* and WH Lee*, Comprehensive characterization of mutant Pichia stipitis co-fermenting cellobiose and xylose through genomic and transcriptomic analyses, Journal of Microbiology and Biotechnology 32(11):1485-1495.

YG Lee†, JM Bae† and SJ Kim*, Enantiopure meso-2,3-butanediol production by metabolically engineered Saccharomyces cerevisiae expressing 2,3-butanediol dehydrogenase from Klebsiella oxytoca, Journal of Biotechnology 354, 1-9.

PW Seo, A Hofmann, JH Kim, SA Hwangbo, JH Kim, JW Kim, TYL Huynh, HE Choy, SJ Kim, J Lee, JO Lee, KS Jin, SY Park and JS Kim*, Structural features of a minimal intact methyltransferase of a type I restriction-modification system, International Journal of Biological Macromolecules 208: 381-389.

SJ Hong, BR Park, HN Lee, DE Jang, HJ Kang, K Ameer, SJ Kim*, YM Kim*, Carbohydrate-binding module of cycloisomaltooligosaccharide glucanotransferase from Thermoanaerobacter thermocopriae improves its cyclodextran production, Enzyme and Microbial Technology, 157, 110023

HJ Lee, DJ Shin, K Han, YW Chin, JP Park, K Park, CH Choi, BR Park, SJ Kim*, SK Kim*, Simultaneous production of 2′-fucosyllactose and difucosyllactose by engineered Escherichia coli with high secretion efficiency, Biotechnology Journal 17:2100629.

SR Kim†, SJ Kim†, SK Kim†, SO Seo†, S Park, J Shin, JS Kim, BR Park, YS Jin, PS Chang and YC Park*, Yeast metabolic engineering for carbon dioxide fixation and its application, Bioresource Technology 346, 126349.

T Kim†, Shakti†, CR Cheong, SR Kim, OH Ban, YH Jung, J Yang* and SJ Kim*, Safety evaluation of Lactococcus lactis IDCC 2301 isolated from home-made cheese, Food Science & Nutrition, 10:67-74.

BS Lee, OH Ban, WY Bang, SA Chae, S Oh, C Park, M Lee, SJ Kim, J Yang*, YH Jung*, Anti-inflammatory potential of Lactiplantibacillus plantarum IDCC 3501 and its safety evaluation, Brazilian Journal of Microbiology 71:10.

TY Kim, HS Park, SK Kim, SJ Kim* and YC Park*, Production of (–)-α-bisabolol in metabolically engineered Saccharomyces cerevisiae, Journal of Biotechnology 340, 10, 13-21.

HS Lim†, SK Kim†, SG Woo, TH Kim, SJ Yeom, W Yong, YJ Ko, SJ Kim*, SG Lee* and DH Lee*, (−)-α-Bisabolol production in engineered Escherichia coli expressing a novel (−)-α-bisabolol synthase from the globe artichoke, Cynara cardunculus var. scolymus, Journal of Agricultural and Food Chemistry 69, 30, 8492-8503.

BS Lee, OH Ban, WY Bang, SA Chae, S Oh, C Park, M Lee, SJ Kim, J Yang* and YH Jung*, Safety assessment of Lactobacillus reuteri IDCC 3701 based on phenotypic and genomic analysis, Annals of Microbiology 71:10 1-6.

W Seong, GH Han, HS Lim, JI Baek, SJ Kim, D Kim, SK Kim, H. Lee, H. Kim, SG Lee* and DH Lee*, Adaptive laboratory evolution of Escherichia coli lacking cellular byproduct formation for enhanced acetate utilization through compensatory ATP consumption, Metabolic Engineering 62 249-259.

SJ Kim†, YS Kim† and SJ Yeom*, Phosphate sugar isomerases and their potential for rare sugar bioconversion, Journal of Microbiology 58(9) 725-733.

SK Kim, PK. Yoon, SJ Kim, SG Woo, E Rha, H Lee, SJ Yeom, H Kim, DH Lee* and SG Lee*, CRISPR interference-mediated gene regulation in Pseudomonas putida KT2440, Microbial Biotechnology 1-12.

정채림, 신해욱, 양정우*, 김수정*, 국내 프로바이오틱스 제품 현황 분석 및 향후 발전 방안, 식품저장과 가공산업 19(2), 120-133.

JW Kim†, Ye-Gi Lee†, SJ Kim, YS Jin and JH Seo*, Deletion of glycerol-3-phosphate dehydrogenase genes improved 2,3-butanediol production by reducing glycerol production in pyruvate decarboxylase-deficient Saccharomyces cerevisiae, Journal of Biotechnology 304(10) 31-37.

SJ Kim, SK Kim, W Seong, SG Woo, H Lee, SJ Yeom, H Kim, DH Lee* and SG Lee*, Enhanced (-)-α-bisabolol productivity by efficient conversion of mevalonate in Escherichia coli, Catalysts 9(5) 432.

SJ Kim†, M Leong†, MB. Amrofell, YJ Lee and TS Moon*. Modulating responses of toehold switches by an inhibitory hairpin, ACS Synthetic Biology 8(3), 601-605.

YJ Lee†, SJ Kim†, MB. Amrofell† and TS Moon*. Establishing a multivariate model for predictable antisense RNA-mediated repression, ACS Synthetic Biology 8(1), 45-56.

YJ Lee, SJ Kim and TS Moon*. Multilevel regulation of bacterial gene expression with the combined STAR and antisense RNA system. ACS Synthetic Biology 7(3), 853-865 (2018)

SJ Kim†, JE Lee†, Do Yup Lee†, H Park, KH Kim and YC Park*. Multi-omic characterization of laboratory-evolved Saccharomyces cerevisiae HJ7-14 with high algal ethanol-producing ability. Applied Microbiology and Biotechnology 102(20), 8989-9002 (2018)

YH Cho†, SJ Kim†, JY Kim, DH Lee, K Park and YC Park*. Effect of PelB signal sequences on Pfe1 expression and ω-hydroxyundec-9-enoic acid biotransformation in recombinant Escherichia coli. Applied Microbiology and Biotechnology 102(17), 7407-7416 (2018)

SJ Kim†, HJ Shim†, JW Kim, YG Lee, YC Park and JH Seo*. Enhanced production of 2,3-butanediol production from xylose by combinatorial engineering of xylose metabolic pathway and cofactor regeneration in pyruvate decarboxylase-deficient Saccharomyces cerevisiae. Bioresource Technology 245: 1551-1557 (2017) 

YH Cho, SJ Kim, HW Kim, JY Kim, JS Gwak, D Chung, KH Kim, K Park and YC Park*. Continuous supply of glucose and glycerol enhances biotransformation of ricinoleic acid to (E)-11-(heptanoyloxy) undec-9-enoic acid in recombinant Escherichia coli. Journal of Biotechnology 253: 34-39 (2017) 

SJ Kim, JW Kim, YG Lee, YC Park and JH Seo*. Metabolic engineering of Saccharomyces cerevisiae for 2,3-butanediol production. Applied Microbiology and Biotechnology 101(6): 2241-2250 (2017) 

YJ Seong, H Park, J Yang, SJ Kim, W Choi, KH Kim and YC Park*, Expression of a mutated SPT15 gene in Saccharomyces cerevisiae enhances both cell growth and ethanol production in microaerobic batch, fed-batch and simultaneous saccharification and fermentations. Applied Microbiology and Biotechnology 101(9): 3567-3575 (2017) 

EJ Choi, JW Kim, SJ Kim, SO Seo, S. Lane, YC Park, YS Jin and JH Seo*. Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose. Biotechnology Journal 11(11): 1424-1432 (2016) 

SE Jo, YJ Seong, HS Lee, SM Lee, SJ Kim, K Park and YC Park*. Microaerobic conversion of xylose to ethanol in recombinant Saccharomyces cerevisiae SX6 (MUT) expressing cofactor-balanced xylose metabolic enzymes and deficient in ALD6. Journal of Biotechnology 227: 72-78 (2016) 

MH Choi, SJ Kim, JW Kim, YC Park* and JH Seo*. Molecular cloning and expression of Enterobacter aerogenes α-acetolactate decarboxylase in pyruvate decarboxylase-deficient Saccharomyces cerevisiae for efficient 2,3-butanediol production. Process Biochemistry 51(2): 170-176 (2016) 

HJ Lee, SJ Kim, JJ Yoon, KH Kim, JH Seo and YC Park*. Evolutionary engineering of Saccharomyces cerevisiae for efficient conversion of red algal biosugars to bioethanol. Bioresource Technology 191: 445-451 (2015)

YH Cho, HJ Lee, JE Lee, SJ Kim, K. Park, DY Lee and YC Park. Fast determination of multiple-reaction intermediates for long-chain dicarboxylic acid production by gas chromatography-flame ionization detector. Journal of Microbiology and Biotechnology 25(5): 704-708 (2015) 

SJ Kim, SO Seo, YC Park, YS Jin and JH Seo*. Production of 2,3-butanediol from xylose by engineered Saccharomyces cerevisiae. Journal of Biotechnology 192: 376-382 (2014) 

DH Lee, SJ Kim and JH Seo. Molecular cloning and characterization of two novel fructose-specific transporters from the osmotolerant and fructophilic yeast Candida magnoliae JH110. Applied Microbiology and Biotechnology 98(8): 3569-3578 (2014) 

SJ Kim†, SO Seo†, YS Jin* and JH Seo*. Production of 2,3-butanediol by engineered Saccharomyces cerevisiae. Bioresource Technology 146: 274-281 (2013) 

SJ Kim, MD Kim, JH Choi, SY Kim, YW Ryu and JH Seo*. Amplification of 1-deoxy-D-xyluose 5-phosphate (DXP) synthase level increases Coenzyme Q10 production in recombinant Escherichia coli. Applied Microbiology and Biotechnology 72: 982-985 (2006) 

YC Park, SJ Kim, JH Choi, WH. Lee, K. Park, M. Kawamukai, YW Ryu and JH Seo*. Batch and fed-batch production of Coenzyme Q10 in recombinant Escherichia coli containing the decaprenyl diphosphate synthase gene from Gluconobacter suboxydans. Applied Microbiology and Biotechnology 67: 192-196 (2005)