2021-09-17 SEP

FAIR analysis of data assets we cannot engage directly

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1 - Querying VCF (5-10 mins)

just the context/history of the data+metadata+indexing axis in genomics data representation

Refs:

• https://episphere.github.io/vcf

• https://observablehq.com/@episphere/pgs

• examples:
  https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000004
  

• https://www.nature.com/articles/s41586-021-03243-6 - meta

2 - De-arraying WSI (the rest of the time)

Praful, Monjoy, Lee

...

• Monjoy, what is the reference for your de-arraying method of choice?
  https://github.com/HMS-IDAC/UNetCoreograph <-- main reference
  https://pubmed.ncbi.nlm.nih.gov/22016800/ <-- original de-arraying method for QuPath

• ... finish cloud4bio answer on the need for an interactive implementation.
  https://docs.opencv.org , for documentation and test dashboards: https://docs.opencv.org/4.5.3/index.html, for the library: https://docs.opencv.org/master/opencv.js