From its establishment, the parish was under the administration of diocesan priests from the Archdiocese of Manila. It was then transferred to the Diocese of Lipa after it became a suffragan of Manila in 1920. It remained a part of the Diocese of Lipa until November 28, 1966 when the Holy Father Pope Paul VI created the Diocese of San Pablo through the apostolic letter Eccleasiarum per ampla. From the canonical erection of the diocese in April 18, 1967 until now, the parish is under the Diocese of San Pablo.
The Most Rev. Pedro N. Bantigue, D.D. served as the first bishop of the diocese from 1967-1995. He was followed by the following:
Bishop Francisco C. San Diego. D.D. from 1995 until he was transferred to the new Diocese of Pasig in 2003.
Bishop Leo M. Drona, S.D.B., D.D. who served from 2004 until his retirement in 2013.
Bishop Buenaventura M. Famadico, D.D. who served from 2013 until his retirement in 2023. Msgr. Mylo Hubert C. Vergara, D.D., Bishop of Pasig, became the Apostolic Administrator until November 2024.
Bishop Marcelino Antonio M. Maralit, D.D. who took possession of the Cathedral on November 21, 2024.
There are no remaining records of the first parish priests from 1815 until 1895 for the first two Books of Baptism no longer exists.
These are the following priests who served the parish:
No records from 1815-1877:
Reb. Padre Jesus Tellez (3 Disyembre 1877)
Reb. Padre Francisco Calvo (31 Mayo 1879)
Reb. Padre Placido Blanco (30 Nobyembre 1880)
Reb. Padre Antonio Rodriguez (27 Mayo 1882)
Nasa pagpapasiya ng Provincial ng mga Pransiskano (27 Nobyembre 1883)
Reb. Padre Jose Ma. Del Val (30 Hunyo 1885)
Reb. Padre Jose Pulido (23 Nobyembre 1886, 19 Mayo 1888, 19 Nobyembre 1889, 16 Mayo 1891)
Reb. Padre Saturio Camunas (17 Mayo 1894)
Reb. Padre Sabino Camunoy (1895-1897)
Reb. Padre Antonio Deogracias Gomez (5 Hunyo 1897)
Reb. Padre Miguel Gonzales (1897-1898)
Reb. Padre Francisco Alcantara (1898-1899)
Walang tala dahil sa Himagsikang Pilipino-Amerikano (1899-1906)
Reb. Padre Luis Zaragoza (1906-1907)
Reb. Padre Francisco Alcantara (1908)
Reb. Padre Estanislao Gran (1908-1911)
Reb. Padre Lorenzo Fernandez (1911)
Reb. Padre Manuel Ofrasio (1912-1928)
Reb. Padre Valentin Azucena (1928-1932)
Reb. Padre Justo De Los Reyes (Parish Administrator, 1932)
Reb. Padre Constantino Conti (1932-1934)
Reb. Padre Justo De Los Reyes (1934-1958)
Reb. Padre Domingo Yabut (1958-1961)
Reb. Padre Apolinario Lingao (1961-1965)
Reb. Padre Julio Lipat (1965-1966)
Reb. Padre Antonio Jacobe (1966-1967)
Reb. Padre Nasario Atienza (1967)
Reb. Padre Liborio Castillo (1967-1968)
Reb. Padre Ramon Kasala (1969-1975)
Reb. Padre Pedro Silva (1975-1980)
Reb. Padre Simplicio De Ramos (1980-1981)
Reb. Padre Mario Rafael Castillo (1981-1982)
Reb. Mons. Nicodemes Rosal (Parish Administrator, 1982)
Reb. Padre Quirino Glodaviza Glorioso (1982-1988)
Reb. Padre Zaldy Fortuno (Parochial Vicar, 1988)
Reb. Padre Rolando Abarca (1988-1991)
Reb. Padre Rene Eriga (1991-1995)
Reb. Padre Ricardo Pajutan, Jr. (Parochial Vicar, 1994-1995)
Reb. Padre John Tabot (1995-1997)
Reb. Padre Allen Abadines (1997-2000)
Reb. Padre Mariano Alipar Villamir (2000-2003)
Reb. Padre Crispin De Guzman (Parochial Vicar)
Reb. Padre Domingo Marfori (Parochial Vicar, 2002-2003)
Reb. Padre Jorge Seldon Vita Coronado (2003-2007)
Reb. Padre Bernaldo Chumacera (Parochial Vicar, 2003-2004)
Reb. Padre Conrado Rodriguez (Parochial Vicar, 2004-2005)
Reb. Padre Rex Maharlika Delos Angeles (2007-2013)
Reb. Padre Modelo Novicio Del Valle (Co-pastor, 2007-2013)
Reb. Padre Ricardo De Ramos De Luna, J.V., J.C.L. (2013-2019)
Reb. Padre Mariano Alipar Villamir (Parochial Vicar, 2013- 2019)
Reb. Mons. James Aco Contreras, J.V., J.C.L. (2019-present)
Reb. Padre Jomarie Maghirang Alcantara (Parochial Vicar, December 2019- June 14, 2020)
Reb. Padre Romulo O. Ponte (San Pedro Calungsod Chapel Administrator, 2019-2021)
Reb. Padre Ray-an Jerico Rosales Jabay (Parochial Vicar, June 15, 2020 - May 23, 2021)
Reb. Padre Ritchie Ramos Fortus (Parochial Vicar, May 24, 2021 - May 1, 2022)
Reb. Padre Fernando G. Gaila (Parochial Vicar, September 2021)
Reb. Padre Michael D. Laude (Parochial Vicar, May 2, 2022 - May 2, 2023)
Reb. Padre Park O. Ebones (Parochial Vicar, May 2, 2023 - June 22, 2025)
Reb. Padre Renato C. Bron, MF (Priest-in-charge, San Pedro Calungsod Mission Station, October 2023 - present)
Reb. Padre Francis S. Zurbano, MF (Assistant Priest, San Pedro Calungsod Mission Station, October 2023 - present)
Reb. Padre Fidel M. Opulencia (Parochial Vicar, June 2, 2025 - present)
Rev. Msgr. James A. Contreras, JCL