Resources
Here you can find a list of tools that we use, download links and stuff of general interest.
Software
Software
MasterMSM: code for building master equation (Markov state) models of molecular kinetics.
Prefur: algorithms for the prediction of folding and unfolding rates for single domain, two-state proteins.
Molecular Dynamics Packages
Molecular Dynamics Packages
Visualization
Visualization
Toolbox
Toolbox
These are just some notes on the types of tools that I use on a daily basis.