SARS-CoV-2 PLpro
PDB ID: 7JRN
Domains
Ubiquitin-like domain 1 (Ubl1) Residues 1-108
Macrodomain I (Mac1) Residues 207-386
SARS-Unique Domain (SUD) Residues 384-745
Ubiquitin-like domain 2 (Ubl2) Residues 746-805
Papain-like protease (PLpro) Residues 806-1058
Nucleic-acid binding domain (NBD) Residues 1059-1200
Marker domain (MD) Residues 1201-1340
Transmembrane domain (TM) Residues 1341-1567
Y domain Residues 1568-1945
Subdomains
SARS-Unique Domain (SUD)
Macrodomain II (Mac2) Residues 387-548
Macrodomain III (Mac3) Residues 549-676
Domain preceding Ubl2 and PL2pro (DPUP) Residues 677-745
Papain-like protease (PLpro)
N-terminal ubiquitin-like domain (UBL) Residues 1-61
C-terminal ubiquitin-specific protease domain (USP) Residues 62-315
Binding sites
Macrodomain I
Adenine-binding site
Distal ribose-binding site
Diphosphate-binding site
Proximal ribose-binding site
Oxyanion subsite
Papain-like protease
Substrate binding channel
Naphthalene-binding site