SR Yang, M Liaw, AC Wei, CH Chen (2025). Deep learning models link local cellular features with whole-animal growth dynamics in zebrafish. Life Sci Alliance 8(8): e202503319.
YR Tan, HY Roan, CH Wang, CH Chen (2025). Zebrafish tailfin as an in vivo model for capturing tissue-scale cell dynamics. Seminars in Cell & Developmental Biology 166: 29-35.
U Kumar, CY Fang, HY Roan, SC Hsu, CH Wang, CH Chen (2024). Whole-body replacement of larval myofibers generates permanent adult myofibers in zebrafish. EMBO J 43(15): 3090-3115.
F Santoso, MP De Leon, WC Kao, WC Chu, HY Roan, GH Lee, MJ Tang, JY Cheng, CH Chen (2024). Appendage-resident epithelial cells expedite wound healing response in adult zebrafish. Current Biology 34 (16): 3603-3615. e4
MP De Leon, FL Wen, GJ Paylaga, YT Wang, HY Roan, CH Wang, CD Hsiao, KH Lin, CH Chen (2023). Mechanical waves identify the amputation position during wound healing in the amputated zebrafish tailfin. Nature Physics 19: 1362–1370.
YR Tan, M Liaw, CH Chen (2023). The hidden depths of zebrafish skin. Elife 12: e88597.
KY Chan, CCS Yan, HY Roan, SC Hsu, TL Tseng, CD Hsiao, CP Hsu, CH Chen (2022). Skin cells undergo asynthetic fission to expand body surfaces in zebrafish. Nature 605 (7908): 119-125.
HY Roan, TL Tseng, CH Chen (2021). Whole-body clonal mapping identifies giant dominant clones in zebrafish skin epidermis. Development 148 (18): dev.199669.
TL Tseng, YT Wang, CY Tsao, YT Ke, YC Lee, HJ Hsu, KD Poss, CH Chen (2021). The RNA helicase Ddx52 functions as a growth switch in juvenile zebrafish. Development 148 (15): dev199578.
TY Wang, TL Tseng, YC Kuo, JK Yu, YH Su, KD Poss, CH Chen (2019). Genetic reprogramming of positional memory in a regenerating appendage. Current Biology 29 (24), 4193-4207.
CH Chen, KD Poss (2017). Regeneration Genetics. Annual Review of Genetics 51, doi: 10.1146/annurev-genet-120116-024554. http://www.annualreviews.org/doi/full/10.1146/annurev-genet-120116-024554
CH Chen, A Puliafito, BD Cox, L Primo, Y Fang, S Di Talia, KD Poss (2016). Multicolor cell barcoding technology for long-term surveillance of epithelial regeneration in zebrafish. Developmental Cell 36 (6), 668-680.
CH Chen, AF Merriman, J Savage, J Willer, T Wahlig, N Katsanis, VP Yin, KD Poss (2015). Transient laminin beta 1a induction defines the wound epidermis during zebrafish fin regeneration. PLoS Genet 11 (8), e1005437.
A Dasgupta, CH Chen, CH Lee, AS Gladfelter, JC Dunlap, JJ Loros (2015). Biological significance of photoreceptor photocycle length: VIVID photocycle governs the dynamic VIVID-White Collar Complex pool mediating photo-adaptation and response to changes in light intensity. PLoS Genet 11 (5), e1005215.
CH Chen, E Durand, J Wang, LI Zon, KD Poss (2013). Zebraflash transgenic lines for in vivo bioluminescence imaging of stem cells and regeneration in adult zebrafish. Development 140 (24), 4988-4997.
JM Hurley, CH Chen, JJ Loros, JC Dunlap (2012). Light-inducible system for tunable protein expression in Neurospora crassa. G3: Genes| Genomes| Genetics 2 (10), 1207-1212.
AT Vaidya, CH Chen, JC Dunlap, JJ Loros, BR Crane (2011). Structure of a light-activated LOV protein dimer that regulates transcription in Neurospora crassa. Science signaling 4 (184), ra50.
CH Chen, BS DeMay, AS Gladfelter, JC Dunlap, JJ Loros (2010). Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora. Proceedings of the National Academy of Sciences 107 (38), 16715-16720.
CH Chen, JC Dunlap, JJ Loros (2010). Neurospora illuminates fungal photoreception. Fungal Genetics and Biology 47 (11), 922-929.
AC Froehlich, CH Chen, WJ Belden, C Madeti, T Roenneberg, M Merrow, JJ Loros, JC Dunlap (2010). Genetic and molecular characterization of a cryptochrome from the filamentous fungus Neurospora crassa. Eukaryotic cell 9 (5), 738-750.
CH Chen, CS Ringelberg, RH Gross, JC Dunlap, JJ Loros (2009). Genome‐wide analysis of light‐inducible responses reveals hierarchical light signalling in Neurospora. EMBO J 28 (8), 1029-1042.
CH Chen, JJ Loros (2009). Neurospora sees the light: light signaling components in a model system. Communicative & integrative biology 2 (5), 448-451.