Part IV: Mapping short-read data

In the afternoon we have a population genomics exercise aimed at studying a structural variant in the Atlantic herring using population-scale re-sequencing data (13:00).

• The exercise instructions can be found here: Population Genomics lab. (link removed)

We then proceed to look into common types of data generated in population genomics.

• The practical exercise for examining SAM/BAM files can be found here.

• The practical exercise for exploring vcf files can be found here.