On Tuesday afternoon Andreas Wallberg will give a lecture on genome assembly (13:00).
The lecture can be found here: Genome assembly lecture. (link removed)
We will then start the genome assembly exercise aimed at assembling the genome of the Atlantic herring (~15:15). We recommend you work in pairs but you are free to work individually if you prefer.
The exercise instructions can be found here: Genome assembly lab. (link removed)
We will start the assembly task on Uppmax and leave the genome assembly running overnight.
On Wednesday morning we evaluate the genome assembly and perform polishing (13:00).