First & Corresponding authors
*Denotes co-first authorship
#Denotes corresponding authorship
Eunchae Kim*, Jee Soo Park*, Seol Song, Se-eun Han, Byungjin Hwang#, and Won Sik Ham#, , International Journal of Surgery, In revision, 2025, “Blood-Based Single-Cell and Bulk RNA sequencing Identifies CAD-Driven CD4+T Cell Dysfunction in Aggressive Small Clear Cell Renal Carcinoma”
Suebin Park*, Su-Hyeon Lee, Se-eun Han, Beom Kyung Kim#, and Byungjin Hwang#, , Hepatology Communications, 2025, “Paired snRNA-seq and scRNA-seq analysis of MASLD patients to identify early-stage markers for disease progression”
Se-eun Han*, Hyunjeong Kim*, Jieun Song, Dabin Song, Soyeon Cho, Changsoo Kim , Eosu Kim#, Byungjin Hwang#, Aging Cell, In revision, 2025, “Integrated single-cell multiomics analysis reveals the signatures of brain aging in mice”.
Su-Hyeon Lee*, Deok-Gie Kim*, Yuri Cho, Eun-Ki Min, Jae Geun Lee, Myoung Soo Kim, Suebin Park, Byungjin Hwang#, Dong Jin Joo# ,Genome Medicine, In revision, 2025, “Integrative Single-Cell RNA-seq and TCR Repertoire Analysis Reveals Distinct Immunological Features of Acute Liver Allograft Rejection”.
Su-Hyeon Lee*, Bo-Yeong Jin*, Cho-Rong Lee, Doo Ri Kim, Areum Shin, Sung-Gyoo Park, Yae-Jean Kim, Seong Heon Kim, Murim Choi#, Byungjin Hwang#, Genome Biology, In revision, 2025, “SCITO-seq2: Ultra-high-throughput single-cell transcriptome and epitope sequencing”
Su-Hyeon Lee, Junha Park, Byungjin Hwang# ,Molecules and Cells, 2024, “Multiplexed multi-modal single cell technologies: From observation to perturbation analysis”.
Hye Won Lee*, Seubin. Park*, Hye Jung Park, Kyung Joo Cho, Do Young Kim#, Byungjin Hwang#, Jun Yong Park, Int. J. Mol. Sci, 2024, doi: 10.3390/ijms252010958, Special Feature, “T-Cell Dynamics Predicts Prognosis of Patients with Hepatocellular Carcinoma Receiving Atezolizumab Plus Bevacizumab”.
Byungjin Hwang*, David S. Lee*, Whitney Tamaki, Yang Sun, Anton Ogorodnikov, George Hartoularos, Aidan Winters, Bertrand Yeung, Kristopher L. Nazor, Yun S. Song, Eric D. Chow, Matthew H. Spitzer, Chun Jimmie Ye#, Nature Methods, 2021, doi: 10.1038/s41592-021-01222-3, “SCITO-seq: single-cell combinatorial indexed cytometry sequencing”.
Byungjin Hwang*, Wookjae Lee*, Soo-Young Yum*, Yujin Jeon, Namjin Cho, Goo Jang#, Duhee Bang#; Nature Communications, 2019, doi:10.1038/s41467-019-09203-z,
“Lineage tracing using a Cas9-deaminase barcoding system targeting endogenous L1 elements”.
Byungjin Hwang*, Sunghoon Heo*, Namjin Cho, Duhee Bang#; ACS Synthetic Biology, 2019, doi:10.1021/acssynbio.8b00482, “Facilitated large-scale sequence validation platform using Tn5-tagmented cell lysates”.
Byungjin Hwang*, Ji Hyun Lee#, Duhee Bang#; Experimental Molecular Medicine, 2018, doi:10.1038/s12276-018-0071-8, Special Feature, “Single-cell RNA sequencing technologies and bioinformatics pipelines”. (Citation >1,500 times)
Jinwoo Ahn*, Byungjin Hwang*, Ha Young Kim*, Hoon Jang, Hwang-Phill Kim, Sae-Won Han, Tae-You Kim, Ji Hyun Lee#, Duhee Bang#; Scientific Reports, 2017, doi: 10.1038/srep46678, “Asymmetrical barcode adapter-assisted recovery of duplicate reads and error correction strategy to detect rare mutations in circulating tumor DNA”.
Jung-Ah Kim*, Byungjin Hwang*, Si Nae Park, Sunghoon Huh,Kyongok Im, Sungbin Choi, Hye Yoon Chung, JooRyung Huh, Eul-Ju Seo, Je-Hwan Lee, Duhee Bang#, Dong Soon Lee#, Plos one, 2016, doi: 10.1371/journal.pone.0167641, “Genomic Profile of Chronic Lymphocytic Leukemia in Korea Identified by Targeted Sequencing”.
Byungjin Hwang, Duhee Bang#, Scientific Reports, 2016 DOI: 10.1038/srep37176, “Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide”
Namjin Cho*, Byungjin Hwang*, Jung-Ki Yoon*, Sangun Park*, Joongoo Lee*, Han Na Seo, Jeewon Lee, Sunghoon Huh, Jinsoo Chung, and Duhee Bang#, Nature Communications, 2015, DOI:10.1038/ncomms9351, "De novo assembly and next-generation sequencing to analyze full-length gene variants from codon-barcoded libraries".
Contributing authors
Jeon H, Lee S, Kim Y, Kim Y, Shin S, Lee Y, Kim M, Ko E, Lee E, Song BM, Choi H, Hwang N, Han SE, Hwang B, Kim JW, Oh CM*, Fang S*, npj Aging, 2025, Exercise alters transcriptional profiles of senescence and gut barrier integrity in intestinal crypts of aging mice.
Connor A. Tsuchida, Nadav Brandes, Raymund Bueno, Marena Trinidad, Thomas Mazumder, Bingfei Yu, Byungjin Hwang, Christopher Chang, Jamin Liu, Yang Sun, Caitlin R. Hopkins, Kevin R. Parker, Yanyan Qi, Ansuman T. Satpathy, Edward A. Stadtmauer, Jamie H.D. Cate, Justin Eyquem, Joseph A. Fraietta, Carl H. June, Howard Y. Chang, Chun Jimmie Ye#, Jennifer A. Doudna#, Cell, 2023, Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells (Developed main CRISPR vector system)
DanielB. Goodman, Camillia S. Azimi, Kendall Kearns, Alexis Talbot ,Kiavash Garakani,Julie Garcia, Nisarg Patel, Byungjin Hwang, David Lee
,Emily Park, Vivasvan S. Vykunta, BrianR. Shy, Chun Jimmie Ye, Justin Eyquem, Alexander Marson, Jeffrey A. Bluestone,KoleT. Roybal#,
Science Translational Medicine, 2022,10.1126/scitranslmed.abm1463,“Pooled screening of CAR T cells identifies diverse immune signaling
domains for next-generation immunotherapies”.
Lee, Jeewon; Lim, Hyeonseob; Jang, Hoon; Hwang, Byungjin; Lee, Joonho; Cho, Junhyuk; Lee, Ji Hyun#; Bang, Duhee#, Nucleic Acids Research, 2018, 10.1093/narlgky820, “CRISPR-Cap: Multiplexed double-stranded DNA enrichment based on the CRISPR system”.
Cho, Namjin; Seo, Han Na; Ryu, Taehoon ; Kwon, Euijin; Heo, Sunghoon; Noh, Jinsung ; Yeom, Huiran ; Hwang, Byungjin; Ha, Heejeong ; Lee, Ji Hyun ; Kwon, Sunghoon#; Bang, Duhee#, Nucleic Acids Research, 2018, 10.1093/narlgky112, “High-throughput construction of multiple cas9 gene variants assembly of high-depth tiled and sequence-verified oligonucleotides”
Seon Young Kim, Kwantae Kim, Byungjin Hwang, Kyongok Im, Si Nae Park, Jung-Ah Kim, Sang Mee Hwang, Duhee Bang#, Dong Soon Lee#, Leukemia Research, 2017, 10.1016/j.leukres.2017.09.001, “The high frequency of the U2AF1 S34Y mutation and its association with isolated trisomy 8 in myelodysplastic syndrome in Asians, but not in Caucasians”.
Mary P. Gillam, Cheol Ryong Ku, Yang Jong Lee, Jean Kim, Se Hoon Kim, Sue Ji Lee, Byungjin Hwang, JaeHyung Koo, Rhonda D. Kineman, Hiroaki Kiyokawa, Eun Jig Lee#, J. Endocr. Soc. 2017; 1 (2): 78-95. doi: 10.1210/js.2016-1004, “Somatotroph-Specific Aip-Deficient Mice Display Pretumorigenic Alterations in Cell-Cycle Signaling”.
Soo Min Han, Byungjin Hwang, Tae-gun Park, Do-Il Kim, Moo-Yong Rhee, Byoung-Kwon Lee, Young Keun Ahn, Byung Ryul Cho, Jeongtaek Woo, Seung-Ho Hur, Jin-Ok Jeong, Sungha Park, Yangsoo Jang, Min Goo Lee, Duhee Bang#, Ji Hyun Lee#, Sang-Hak Lee#, PLOS ONE, 2015, DOI: 10.1371/journal.pone.0126706, "Genetic Testing of Korean Familial Hypercholesterolemia Using Whole-Exome Sequencing".