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As sophisticated computational analysis and methods become more common in biology and chemistry it's becoming more and more important to know how to code and interact with new software. Computational biologists commonly use the computing languages Python, R, and shell command (bash/csh) to write procedures and interface with software and existing program modules.
As sophisticated computational analysis and methods become more common in biology and chemistry it's becoming more and more important to know how to code and interact with new software. Computational biologists commonly use the computing languages Python, R, and shell command (bash/csh) to write procedures and interface with software and existing program modules.
programming language classification
Using a terminal
Using a terminal
a bash terminal introduction (video)
bash scripting introduction (article)
Jupyter Notebook
Jupyter Notebook
what is a Jupyter notebook and how to use it (video)
Python basics
Python basics
introduction in a jupyter notebook (zip file)
full python course for beginners (video series)
what is a python package/library? (article)
Useful python packages biologists:
biopython - modules for computational biology and bioinformatics
MDAnalysis - modules for analyzing molecular dynamics simulation data
scikit-learn - modules for performing statistics, data analysis, and machine learning
seaborn - statistical data visualization
pandas - modules for data organization, analysis and visualization
matplotlib - data visualization
R basics
R basics
why is R useful? (article)
setting up R and RStudio for Windows (video)
introduction to R and RStudio (video)
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